RNA–Protein interactions for RNA: ENST00000591515.6

LSM7-206, Transcript of LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM7, Length 710 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM7-206	ENST00000591515	PUS3	Q9BZE2	481 aa	Known RBP	28.57	■■■□□ 2.16
LSM7-206	ENST00000591515	ZFYVE28	Q9HCC9	887 aa		28.57	■■■□□ 2.16
LSM7-206	ENST00000591515	RANBP2	P49792	3224 aa	Known RBP	28.57	■■■□□ 2.16
LSM7-206	ENST00000591515	G3BP1	Q13283	466 aa	Known RBP eCLIP	28.56	■■■□□ 2.16
LSM7-206	ENST00000591515	ARHGEF6	Q15052	776 aa		28.56	■■■□□ 2.16
LSM7-206	ENST00000591515	SPDYE2	Q495Y8	402 aa		28.56	■■■□□ 2.16
LSM7-206	ENST00000591515	LRRC24	Q50LG9	513 aa		28.56	■■■□□ 2.16
LSM7-206	ENST00000591515	CEP85	Q6P2H3	762 aa		28.56	■■■□□ 2.16
LSM7-206	ENST00000591515	FAM43A	Q8N2R8	423 aa		28.56	■■■□□ 2.16
LSM7-206	ENST00000591515	SSH3	Q8TE77	659 aa		28.56	■■■□□ 2.16
LSM7-206	ENST00000591515	TEPSIN	Q96N21	525 aa		28.56	■■■□□ 2.16
LSM7-206	ENST00000591515	SIL1	Q9H173	461 aa		28.56	■■■□□ 2.16
LSM7-206	ENST00000591515	PNMA6E	A0A0J9YXQ4	647 aa		28.55	■■■□□ 2.16
LSM7-206	ENST00000591515	UBE4A	Q14139	1066 aa		28.55	■■■□□ 2.16
LSM7-206	ENST00000591515	POLA2	Q14181	598 aa		28.55	■■■□□ 2.16
LSM7-206	ENST00000591515	SH3TC2	Q8TF17	1288 aa		28.55	■■■□□ 2.16
LSM7-206	ENST00000591515	CEP126	Q9P2H0	1117 aa		28.55	■■■□□ 2.16
LSM7-206	ENST00000591515	ZNF70	Q9UC06	446 aa	Predicted RBP	28.55	■■■□□ 2.16
LSM7-206	ENST00000591515	CENPB	P07199	599 aa	Predicted RBP	28.54	■■■□□ 2.16
LSM7-206	ENST00000591515	TNFAIP1	Q13829	316 aa		28.54	■■■□□ 2.16
LSM7-206	ENST00000591515	VGLL4	Q14135	290 aa		28.54	■■■□□ 2.16
LSM7-206	ENST00000591515	ARHGAP39	Q9C0H5	1083 aa		28.54	■■■□□ 2.16
LSM7-206	ENST00000591515	PDE8B	O95263	885 aa		28.53	■■■□□ 2.16
LSM7-206	ENST00000591515	GTF2A2	P52657	109 aa		28.53	■■■□□ 2.16
LSM7-206	ENST00000591515	PA2G4	Q9UQ80	394 aa	Known RBP	28.53	■■■□□ 2.16
LSM7-206	ENST00000591515	OS9	Q13438	667 aa	Predicted RBP	28.52	■■■□□ 2.16
LSM7-206	ENST00000591515	HSP90AB4P	Q58FF6	505 aa		28.52	■■■□□ 2.16
LSM7-206	ENST00000591515	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	28.52	■■■□□ 2.16	2e-14	■■■■□ 20.5
LSM7-206	ENST00000591515	CRBN	Q96SW2	442 aa		28.52	■■■□□ 2.16
LSM7-206	ENST00000591515	TDRD3	Q9H7E2	651 aa	Known RBP	28.52	■■■□□ 2.16
LSM7-206	ENST00000591515	PUM3	Q15397	648 aa	Known RBP	28.51	■■■□□ 2.15
LSM7-206	ENST00000591515	CHRDL2	Q6WN34	429 aa		28.51	■■■□□ 2.15
LSM7-206	ENST00000591515	FAM205A	Q6ZU69	1335 aa		28.5	■■■□□ 2.15
LSM7-206	ENST00000591515	MAP3K9	P80192	1104 aa		28.5	■■■□□ 2.15
LSM7-206	ENST00000591515	ATG9A	Q7Z3C6	839 aa		28.5	■■■□□ 2.15
LSM7-206	ENST00000591515	TMEM39B	Q9GZU3	492 aa		28.5	■■■□□ 2.15
LSM7-206	ENST00000591515	SURF6	O75683	361 aa	Known RBP	28.49	■■■□□ 2.15
LSM7-206	ENST00000591515	IFIT1	P09914	478 aa	Known RBP	28.49	■■■□□ 2.15
LSM7-206	ENST00000591515	SHISA4	Q96DD7	197 aa		28.49	■■■□□ 2.15
LSM7-206	ENST00000591515	SERPINA10	Q9UK55	444 aa		28.49	■■■□□ 2.15
LSM7-206	ENST00000591515	TTF2	Q9UNY4	1162 aa	Known RBP	28.49	■■■□□ 2.15
LSM7-206	ENST00000591515	AKAP2	Q9Y2D5	859 aa		28.49	■■■□□ 2.15
LSM7-206	ENST00000591515	TCP10L2	B9ZVM9	353 aa		28.48	■■■□□ 2.15
LSM7-206	ENST00000591515	SLC5A1	P13866	664 aa		28.48	■■■□□ 2.15
LSM7-206	ENST00000591515	LACTB	P83111	547 aa	Predicted RBP	28.48	■■■□□ 2.15
LSM7-206	ENST00000591515	MFSD14B	Q5SR56	506 aa		28.48	■■■□□ 2.15
LSM7-206	ENST00000591515	TLR2	O60603	784 aa		28.47	■■■□□ 2.15
LSM7-206	ENST00000591515	ERC1	Q8IUD2	1116 aa		28.47	■■■□□ 2.15
LSM7-206	ENST00000591515	VGLL2	Q8N8G2	317 aa		28.47	■■■□□ 2.15
LSM7-206	ENST00000591515	LPIN2	Q92539	896 aa		28.47	■■■□□ 2.15
LSM7-206	ENST00000591515	RBM27	Q9P2N5	1060 aa	Known RBP	28.47	■■■□□ 2.15
LSM7-206	ENST00000591515	NOP58	Q9Y2X3	529 aa	Known RBP	28.47	■■■□□ 2.15
LSM7-206	ENST00000591515	CSAD	Q9Y600	493 aa		28.47	■■■□□ 2.15
LSM7-206	ENST00000591515	CAVIN4	Q5BKX8	364 aa		28.46	■■■□□ 2.15
LSM7-206	ENST00000591515	SPDYE5	A6NIY4	337 aa		28.45	■■■□□ 2.14
LSM7-206	ENST00000591515	ATP2B3	Q16720	1220 aa		28.45	■■■□□ 2.14
LSM7-206	ENST00000591515	VPS37D	Q86XT2	251 aa		28.45	■■■□□ 2.14
LSM7-206	ENST00000591515	TDRD7	Q8NHU6	1098 aa	Known RBP	28.45	■■■□□ 2.14
LSM7-206	ENST00000591515	SNCAIP	Q9Y6H5	919 aa		28.45	■■■□□ 2.14
LSM7-206	ENST00000591515	BTBD19	C9JJ37	291 aa		28.44	■■■□□ 2.14
LSM7-206	ENST00000591515	KIF22	Q14807	665 aa		28.44	■■■□□ 2.14
LSM7-206	ENST00000591515	MTFR1	Q15390	333 aa		28.44	■■■□□ 2.14
LSM7-206	ENST00000591515	WDHD1	O75717	1129 aa	Predicted RBP	28.42	■■■□□ 2.14
LSM7-206	ENST00000591515	CETP	P11597	493 aa		28.42	■■■□□ 2.14
LSM7-206	ENST00000591515	CRK	P46108	304 aa		28.42	■■■□□ 2.14
LSM7-206	ENST00000591515	TNNI2	P48788	182 aa		28.42	■■■□□ 2.14
LSM7-206	ENST00000591515	ZCCHC17	Q9NP64	241 aa	Known RBP	28.42	■■■□□ 2.14
LSM7-206	ENST00000591515	MGAM	O43451	1857 aa		28.42	■■■□□ 2.14
LSM7-206	ENST00000591515	ECM2	O94769	699 aa	Predicted RBP	28.41	■■■□□ 2.14
LSM7-206	ENST00000591515	GNRH1	P01148	92 aa		28.41	■■■□□ 2.14
LSM7-206	ENST00000591515	FGFR2	P21802	821 aa		28.41	■■■□□ 2.14
LSM7-206	ENST00000591515	CTGF	P29279	349 aa		28.41	■■■□□ 2.14
LSM7-206	ENST00000591515	HIBADH	P31937	336 aa	Known RBP	28.41	■■■□□ 2.14
LSM7-206	ENST00000591515	PRMT2	P55345	433 aa		28.41	■■■□□ 2.14
LSM7-206	ENST00000591515	TFCP2	Q12800	502 aa		28.41	■■■□□ 2.14
LSM7-206	ENST00000591515	DPF3	Q92784	378 aa		28.41	■■■□□ 2.14
LSM7-206	ENST00000591515	RAB11FIP3	O75154	756 aa		28.4	■■■□□ 2.14
LSM7-206	ENST00000591515	GYG1	P46976	350 aa		28.4	■■■□□ 2.14
LSM7-206	ENST00000591515	GRIK5	Q16478	980 aa		28.4	■■■□□ 2.14
LSM7-206	ENST00000591515	ERO1B	Q86YB8	467 aa		28.4	■■■□□ 2.14
LSM7-206	ENST00000591515	GPR108	Q9NPR9	543 aa		28.4	■■■□□ 2.14
LSM7-206	ENST00000591515	IRF6	O14896	467 aa		28.39	■■■□□ 2.14
LSM7-206	ENST00000591515	PRO3102	Q9H379	93 aa		28.39	■■■□□ 2.14
LSM7-206	ENST00000591515	GNL3L	Q9NVN8	582 aa	Known RBP	28.39	■■■□□ 2.14
LSM7-206	ENST00000591515	CACNB3	P54284	484 aa		28.38	■■■□□ 2.13
LSM7-206	ENST00000591515	SNAPC2	Q13487	334 aa		28.38	■■■□□ 2.13
LSM7-206	ENST00000591515	UBE2Q1	Q7Z7E8	422 aa		28.38	■■■□□ 2.13
LSM7-206	ENST00000591515	SIRT2	Q8IXJ6	389 aa		28.38	■■■□□ 2.13
LSM7-206	ENST00000591515	ZKSCAN4	Q969J2	545 aa	Predicted RBP	28.38	■■■□□ 2.13
LSM7-206	ENST00000591515	FAM84B	Q96KN1	310 aa	Predicted RBP	28.38	■■■□□ 2.13
LSM7-206	ENST00000591515	WRNIP1	Q96S55	665 aa		28.38	■■■□□ 2.13
LSM7-206	ENST00000591515	EXOC6B	Q9Y2D4	811 aa		28.38	■■■□□ 2.13
LSM7-206	ENST00000591515	C17orf99	Q6UX52	265 aa		28.37	■■■□□ 2.13
LSM7-206	ENST00000591515	SRRD	Q9UH36	339 aa		28.37	■■■□□ 2.13
LSM7-206	ENST00000591515	LAMA3	Q16787	3333 aa		28.36	■■■□□ 2.13
LSM7-206	ENST00000591515		A0A1B0GUL7	405 aa		28.36	■■■□□ 2.13
LSM7-206	ENST00000591515	FRAT2	O75474	233 aa	Predicted RBP	28.36	■■■□□ 2.13
LSM7-206	ENST00000591515	PPIL2	Q13356	520 aa		28.36	■■■□□ 2.13
LSM7-206	ENST00000591515	KIF1BP	Q96EK5	621 aa		28.36	■■■□□ 2.13
LSM7-206	ENST00000591515	TRIM47	Q96LD4	638 aa		28.36	■■■□□ 2.13

Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms