RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 FAM89AQ96GI7 184 aa8.66□□□□□ -1.02
ZNF540-206ENST00000589117 CNNM1Q9NRU3 951 aa8.66□□□□□ -1.02
ZNF540-206ENST00000589117 TFIP11Q9UBB9 837 aaKnown RBP8.66□□□□□ -1.02
ZNF540-206ENST00000589117 IVNS1ABPQ9Y6Y0 642 aa8.66□□□□□ -1.02
ZNF540-206ENST00000589117 MAST3O60307 1309 aa8.66□□□□□ -1.02
ZNF540-206ENST00000589117 PALM3A6NDB9 673 aaPredicted RBP8.66□□□□□ -1.02
ZNF540-206ENST00000589117 EXOC5O00471 708 aa8.66□□□□□ -1.02
ZNF540-206ENST00000589117 ZNF213O14771 459 aa8.66□□□□□ -1.02
ZNF540-206ENST00000589117 ATP2B3Q16720 1220 aa8.66□□□□□ -1.02
ZNF540-206ENST00000589117 DNAJC10Q8IXB1 793 aa8.66□□□□□ -1.02
ZNF540-206ENST00000589117 DDX11Q96FC9 970 aa8.66□□□□□ -1.02
ZNF540-206ENST00000589117 ZNF512BQ96KM6 892 aaPredicted RBP8.66□□□□□ -1.02
ZNF540-206ENST00000589117 FUCA2Q9BTY2 467 aa8.66□□□□□ -1.02
ZNF540-206ENST00000589117 DACT1Q9NYF0 836 aa8.66□□□□□ -1.02
ZNF540-206ENST00000589117 PCDHGC3Q9UN70 934 aa8.66□□□□□ -1.02
ZNF540-206ENST00000589117 ERVV-1B6SEH8 477 aa8.65□□□□□ -1.02
ZNF540-206ENST00000589117 JAK2O60674 1132 aa8.65□□□□□ -1.02
ZNF540-206ENST00000589117 NUDT18Q6ZVK8 323 aa8.65□□□□□ -1.02
ZNF540-206ENST00000589117 NCOA7Q8NI08 942 aa8.65□□□□□ -1.02
ZNF540-206ENST00000589117 LRRN4Q8WUT4 740 aa8.65□□□□□ -1.02
ZNF540-206ENST00000589117 PUS3Q9BZE2 481 aaKnown RBP8.65□□□□□ -1.02
ZNF540-206ENST00000589117 ASAP1Q9ULH1 1129 aa8.65□□□□□ -1.02
ZNF540-206ENST00000589117 WDR19Q8NEZ3 1342 aa8.65□□□□□ -1.02
ZNF540-206ENST00000589117 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.65□□□□□ -1.03
ZNF540-206ENST00000589117 PTPDC1A2A3K4 754 aa8.65□□□□□ -1.03
ZNF540-206ENST00000589117 SMAPO00193 183 aa8.65□□□□□ -1.03
ZNF540-206ENST00000589117 UQCRFS1P1P0C7P4 283 aa8.65□□□□□ -1.03
ZNF540-206ENST00000589117 PDIA3P30101 505 aaKnown RBP8.65□□□□□ -1.03
ZNF540-206ENST00000589117 TYRO3Q06418 890 aa8.65□□□□□ -1.03
ZNF540-206ENST00000589117 APOBRQ0VD83 1088 aa8.65□□□□□ -1.03
ZNF540-206ENST00000589117 RESTQ13127 1097 aa8.65□□□□□ -1.03
ZNF540-206ENST00000589117 DNTTIP2Q5QJE6 756 aaKnown RBP8.65□□□□□ -1.03
ZNF540-206ENST00000589117 CCDC73Q6ZRK6 1079 aa8.65□□□□□ -1.03
ZNF540-206ENST00000589117 NSUN7Q8NE18 718 aaKnown RBP8.65□□□□□ -1.03
ZNF540-206ENST00000589117 CLSTN2Q9H4D0 955 aa8.65□□□□□ -1.03
ZNF540-206ENST00000589117 BTG4Q9NY30 223 aa8.65□□□□□ -1.03
ZNF540-206ENST00000589117 TRMT112Q9UI30 125 aaKnown RBP8.65□□□□□ -1.03
ZNF540-206ENST00000589117 GLI3P10071 1580 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 CPLX1O14810 134 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 PDE8AO60658 829 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 ITGA6P23229 1130 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 CTSWP56202 376 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 EVCP57679 992 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 CAMK4Q16566 473 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 FAM173BQ6P4H8 233 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 CPLX2Q6PUV4 134 aaKnown RBP8.64□□□□□ -1.03
ZNF540-206ENST00000589117 STOX1Q6ZVD7 989 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 NLRP10Q86W26 655 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 OSBP2Q969R2 916 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 LRRC2Q9BYS8 371 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 RCOR1Q9UKL0 485 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 NUP188Q5SRE5 1749 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 PAPPAQ13219 1627 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 SOCS7O14512 581 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 IRS4O14654 1257 aaPredicted RBP8.64□□□□□ -1.03
ZNF540-206ENST00000589117 FGAP02671 866 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 LIG1P18858 919 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 LMOD1P29536 600 aaPredicted RBP8.64□□□□□ -1.03
ZNF540-206ENST00000589117 CCT2P78371 535 aaKnown RBP8.64□□□□□ -1.03
ZNF540-206ENST00000589117 ZRSR1Q15695 479 aaKnown RBP8.64□□□□□ -1.03
ZNF540-206ENST00000589117 TTLL11Q8NHH1 800 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 CDCA7Q9BWT1 371 aaPredicted RBP8.64□□□□□ -1.03
ZNF540-206ENST00000589117 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.64□□□□□ -1.03
ZNF540-206ENST00000589117 RIPOR2Q9Y4F9 1068 aa8.64□□□□□ -1.03
ZNF540-206ENST00000589117 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.64□□□□□ -1.03
ZNF540-206ENST00000589117 TMEM88BA6NKF7 163 aa8.63□□□□□ -1.03
ZNF540-206ENST00000589117 M0R2C6 588 aa8.63□□□□□ -1.03
ZNF540-206ENST00000589117 RRP9O43818 475 aaKnown RBP8.63□□□□□ -1.03
ZNF540-206ENST00000589117 KINO60870 393 aaKnown RBP8.63□□□□□ -1.03
ZNF540-206ENST00000589117 CDKL5O76039 1030 aa8.63□□□□□ -1.03
ZNF540-206ENST00000589117 PDE8BO95263 885 aa8.63□□□□□ -1.03
ZNF540-206ENST00000589117 IL6STP40189 918 aaPredicted RBP8.63□□□□□ -1.03
ZNF540-206ENST00000589117 ZAP70P43403 619 aa8.63□□□□□ -1.03
ZNF540-206ENST00000589117 RBM43Q6ZSC3 357 aaKnown RBP8.63□□□□□ -1.03
ZNF540-206ENST00000589117 R3HCC1Q9Y3T6 440 aaKnown RBP8.63□□□□□ -1.03
ZNF540-206ENST00000589117 MROH5Q6ZUA9 1318 aa8.63□□□□□ -1.03
ZNF540-206ENST00000589117 ZNF335Q9H4Z2 1342 aaPredicted RBP8.63□□□□□ -1.03
ZNF540-206ENST00000589117 GOLGA6L19H0YKK7 550 aa8.63□□□□□ -1.03
ZNF540-206ENST00000589117 CHGBP05060 677 aa8.63□□□□□ -1.03
ZNF540-206ENST00000589117 CYP19A1P11511 503 aaPredicted RBP8.63□□□□□ -1.03
ZNF540-206ENST00000589117 KCNA1Q09470 495 aa8.63□□□□□ -1.03
ZNF540-206ENST00000589117 COL9A3Q14050 684 aaPredicted RBP8.63□□□□□ -1.03
ZNF540-206ENST00000589117 UBE3CQ15386 1083 aa8.63□□□□□ -1.03
ZNF540-206ENST00000589117 SLC9C2Q5TAH2 1124 aa8.63□□□□□ -1.03
ZNF540-206ENST00000589117 PIBF1Q8WXW3 757 aa8.63□□□□□ -1.03
ZNF540-206ENST00000589117 SYTL4Q96C24 671 aaPredicted RBP8.63□□□□□ -1.03
ZNF540-206ENST00000589117 CCDC85AQ96PX6 553 aaPredicted RBP8.63□□□□□ -1.03
ZNF540-206ENST00000589117 NAT10Q9H0A0 1025 aaKnown RBP8.63□□□□□ -1.03
ZNF540-206ENST00000589117 GPAA1O43292 621 aa8.62□□□□□ -1.03
ZNF540-206ENST00000589117 PRC1O43663 620 aa8.62□□□□□ -1.03
ZNF540-206ENST00000589117 DTNBO60941 627 aa8.62□□□□□ -1.03
ZNF540-206ENST00000589117 NR1I2O75469 434 aa8.62□□□□□ -1.03
ZNF540-206ENST00000589117 APPP05067 770 aa8.62□□□□□ -1.03
ZNF540-206ENST00000589117 GPTP24298 496 aa8.62□□□□□ -1.03
ZNF540-206ENST00000589117 ADORA1P30542 326 aa8.62□□□□□ -1.03
ZNF540-206ENST00000589117 ME1P48163 572 aa8.62□□□□□ -1.03
ZNF540-206ENST00000589117 ZNF165P49910 485 aa8.62□□□□□ -1.03
ZNF540-206ENST00000589117 HSP90AA2PQ14568 343 aaPredicted RBP8.62□□□□□ -1.03
ZNF540-206ENST00000589117 SF3A1Q15459 793 aaKnown RBP8.62□□□□□ -1.03
ZNF540-206ENST00000589117 SYNE3Q6ZMZ3 975 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms