RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 MCAMP43121 646 aa34.61■■■■□ 3.13
LIG3-208ENST00000586407 NFIAQ12857 509 aa34.61■■■■□ 3.13
LIG3-208ENST00000586407 DZIP1Q86YF9 867 aaKnown RBP34.61■■■■□ 3.13
LIG3-208ENST00000586407 SPATA5Q8NB90 893 aa34.61■■■■□ 3.13
LIG3-208ENST00000586407 GPR108Q9NPR9 543 aa34.61■■■■□ 3.13
LIG3-208ENST00000586407 WNK4Q96J92 1243 aa34.6■■■■□ 3.13
LIG3-208ENST00000586407 TLR7Q9NYK1 1049 aaKnown RBP34.6■■■■□ 3.13
LIG3-208ENST00000586407 MYO5AQ9Y4I1 1855 aaKnown RBP34.59■■■■□ 3.13
LIG3-208ENST00000586407 TCP10Q12799 353 aa34.59■■■■□ 3.13
LIG3-208ENST00000586407 FKBP1CQ5VVH2 108 aa34.59■■■■□ 3.13
LIG3-208ENST00000586407 FAM83AQ86UY5 434 aa34.59■■■■□ 3.13
LIG3-208ENST00000586407 SNRKQ9NRH2 765 aa34.59■■■■□ 3.13
LIG3-208ENST00000586407 USP40Q9NVE5 1235 aa34.59■■■■□ 3.13
LIG3-208ENST00000586407 SAGE1Q9NXZ1 904 aa34.59■■■■□ 3.13
LIG3-208ENST00000586407 DDX19BQ9UMR2 479 aa34.59■■■■□ 3.13
LIG3-208ENST00000586407 ANKRD13AQ8IZ07 590 aa34.58■■■■□ 3.13
LIG3-208ENST00000586407 ZNF384Q8TF68 577 aa34.58■■■■□ 3.13
LIG3-208ENST00000586407 ELP3Q9H9T3 547 aa34.58■■■■□ 3.13
LIG3-208ENST00000586407 GJA5P36382 358 aa34.57■■■■□ 3.12
LIG3-208ENST00000586407 TTC39AQ5SRH9 613 aa34.57■■■■□ 3.12
LIG3-208ENST00000586407 ERICH6Q7L0X2 663 aa34.57■■■■□ 3.12
LIG3-208ENST00000586407 CCDC8Q9H0W5 538 aaPredicted RBP34.57■■■■□ 3.12
LIG3-208ENST00000586407 GAKO14976 1311 aa34.56■■■■□ 3.12
LIG3-208ENST00000586407 MECOMQ03112 1051 aa34.56■■■■□ 3.12
LIG3-208ENST00000586407 SPTY2D1Q68D10 685 aaPredicted RBP34.56■■■■□ 3.12
LIG3-208ENST00000586407 REM2Q8IYK8 340 aaPredicted RBP34.56■■■■□ 3.12
LIG3-208ENST00000586407 ZBTB40Q9NUA8 1239 aa34.56■■■■□ 3.12
LIG3-208ENST00000586407 DBNLQ9UJU6 430 aaKnown RBP34.56■■■■□ 3.12
LIG3-208ENST00000586407 LAMB1P07942 1786 aa34.56■■■■□ 3.12
LIG3-208ENST00000586407 UQCRFS1P1P0C7P4 283 aa34.55■■■■□ 3.12
LIG3-208ENST00000586407 PPP1R3FQ6ZSY5 799 aaPredicted RBP34.55■■■■□ 3.12
LIG3-208ENST00000586407 CNKSR2Q8WXI2 1034 aa34.55■■■■□ 3.12
LIG3-208ENST00000586407 EAF2Q96CJ1 260 aaPredicted RBP34.55■■■■□ 3.12
LIG3-208ENST00000586407 FAM198AQ9UFP1 575 aa34.55■■■■□ 3.12
LIG3-208ENST00000586407 RPAP1Q9BWH6 1393 aaPredicted RBP34.54■■■■□ 3.12
LIG3-208ENST00000586407 TM4SF4P48230 202 aa34.54■■■■□ 3.12
LIG3-208ENST00000586407 ZFPM1Q8IX07 1006 aa34.54■■■■□ 3.12
LIG3-208ENST00000586407 TBC1D8O95759 1140 aa34.53■■■■□ 3.12
LIG3-208ENST00000586407 SIRT2Q8IXJ6 389 aa34.53■■■■□ 3.12
LIG3-208ENST00000586407 FAM151AQ8WW52 585 aa34.53■■■■□ 3.12
LIG3-208ENST00000586407 MROH7-TTC4A0A0A0MT08 1334 aa34.53■■■■□ 3.12
LIG3-208ENST00000586407 BTDP43251 543 aa34.52■■■■□ 3.12
LIG3-208ENST00000586407 MAP3K9P80192 1104 aa34.52■■■■□ 3.12
LIG3-208ENST00000586407 VGLL4Q14135 290 aa34.52■■■■□ 3.12
LIG3-208ENST00000586407 CCDC158Q5M9N0 1113 aa34.52■■■■□ 3.12
LIG3-208ENST00000586407 MIGA2Q7L4E1 593 aa34.52■■■■□ 3.12
LIG3-208ENST00000586407 DDX55Q8NHQ9 600 aaKnown RBP eCLIP34.52■■■■□ 3.12
LIG3-208ENST00000586407 YTHDC1Q96MU7 727 aaKnown RBP34.52■■■■□ 3.12
LIG3-208ENST00000586407 RAI14Q9P0K7 980 aa34.52■■■■□ 3.12
LIG3-208ENST00000586407 DOCK2Q92608 1830 aa34.52■■■■□ 3.12
LIG3-208ENST00000586407 APBB1O00213 710 aa34.51■■■■□ 3.12
LIG3-208ENST00000586407 SREBF2Q12772 1141 aa34.51■■■■□ 3.12
LIG3-208ENST00000586407 OPTNQ96CV9 577 aa34.51■■■■□ 3.12
LIG3-208ENST00000586407 MAST2Q6P0Q8 1798 aa34.51■■■■□ 3.11
LIG3-208ENST00000586407 UNCXA6NJT0 531 aa34.5■■■■□ 3.11
LIG3-208ENST00000586407 ZBTB48P10074 688 aaPredicted RBP34.5■■■■□ 3.11
LIG3-208ENST00000586407 RGS3P49796 1198 aa34.5■■■■□ 3.11
LIG3-208ENST00000586407 NSUN4Q96CB9 384 aaKnown RBP34.5■■■■□ 3.11
LIG3-208ENST00000586407 IL1RAPL2Q9NP60 686 aa34.5■■■■□ 3.11
LIG3-208ENST00000586407 RFX7Q2KHR2 1363 aa34.49■■■■□ 3.11
LIG3-208ENST00000586407 SLF2Q8IX21 1173 aa34.49■■■■□ 3.11
LIG3-208ENST00000586407 WRNIP1Q96S55 665 aa34.49■■■■□ 3.11
LIG3-208ENST00000586407 MANSC4A6NHS7 340 aaPredicted RBP34.48■■■■□ 3.11
LIG3-208ENST00000586407 AACSQ86V21 672 aa34.48■■■■□ 3.11
LIG3-208ENST00000586407 FAM163AQ96GL9 167 aaPredicted RBP34.48■■■■□ 3.11
LIG3-208ENST00000586407 BCL11AQ9H165 835 aa34.48■■■■□ 3.11
LIG3-208ENST00000586407 R3HDMLQ9H3Y0 253 aa34.48■■■■□ 3.11
LIG3-208ENST00000586407 LRP2BPQ9P2M1 347 aa34.48■■■■□ 3.11
LIG3-208ENST00000586407 ZAP70P43403 619 aa34.47■■■■□ 3.11
LIG3-208ENST00000586407 PDE3AQ14432 1141 aa34.47■■■■□ 3.11
LIG3-208ENST00000586407 RPAP2Q8IXW5 612 aaPredicted RBP34.47■■■■□ 3.11
LIG3-208ENST00000586407 GOLGA6L2Q8N9W4 650 aaPredicted RBP34.47■■■■□ 3.11
LIG3-208ENST00000586407 ZKSCAN4Q969J2 545 aaPredicted RBP34.47■■■■□ 3.11
LIG3-208ENST00000586407 DDX4Q9NQI0 724 aaKnown RBP34.47■■■■□ 3.11
LIG3-208ENST00000586407 CSADQ9Y600 493 aa34.47■■■■□ 3.11
LIG3-208ENST00000586407 IGF2BP3O00425 579 aaKnown RBP eCLIP34.46■■■■□ 3.11
LIG3-208ENST00000586407 WDHD1O75717 1129 aaPredicted RBP34.46■■■■□ 3.11
LIG3-208ENST00000586407 CYP2E1P05181 493 aaPredicted RBP34.46■■■■□ 3.11
LIG3-208ENST00000586407 PICALMQ13492 652 aa34.46■■■■□ 3.11
LIG3-208ENST00000586407 ERC1Q8IUD2 1116 aa34.46■■■■□ 3.11
LIG3-208ENST00000586407 RHPN1Q8TCX5 695 aa34.46■■■■□ 3.11
LIG3-208ENST00000586407 SNCAIPQ9Y6H5 919 aa34.46■■■■□ 3.11
LIG3-208ENST00000586407 GPR75-ASB3A0A0A6YYF3 556 aa34.45■■■■□ 3.11
LIG3-208ENST00000586407 DCAF15Q66K64 600 aa34.45■■■■□ 3.11
LIG3-208ENST00000586407 OTUD5Q96G74 571 aa34.45■■■■□ 3.11
LIG3-208ENST00000586407 IDI2Q9BXS1 227 aa34.45■■■■□ 3.11
LIG3-208ENST00000586407 NDUFB9Q9Y6M9 179 aa34.45■■■■□ 3.11
LIG3-208ENST00000586407 INPP5BP32019 993 aa34.44■■■■□ 3.1
LIG3-208ENST00000586407 RHBDL3P58872 404 aa34.44■■■■□ 3.1
LIG3-208ENST00000586407 DGKZQ13574 1117 aa34.44■■■■□ 3.1
LIG3-208ENST00000586407 SH3BP5LQ7L8J4 393 aa34.44■■■■□ 3.1
LIG3-208ENST00000586407 IFNL1Q8IU54 200 aa34.44■■■■□ 3.1
LIG3-208ENST00000586407 HOOK2Q96ED9 719 aa34.44■■■■□ 3.1
LIG3-208ENST00000586407 ABHD8Q96I13 439 aa34.44■■■■□ 3.1
LIG3-208ENST00000586407 ZNF341Q9BYN7 854 aa34.44■■■■□ 3.1
LIG3-208ENST00000586407 MCOLN1Q9GZU1 580 aa34.44■■■■□ 3.1
LIG3-208ENST00000586407 PIH1D3Q9NQM4 214 aaKnown RBP34.44■■■■□ 3.1
LIG3-208ENST00000586407 HMMRO75330 724 aa34.43■■■■□ 3.1
LIG3-208ENST00000586407 SLURP2P0DP57 97 aa34.43■■■■□ 3.1
LIG3-208ENST00000586407 GSTO1P78417 241 aa34.43■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms