RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 TMEM63CQ9P1W3 806 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 NAP1L2Q9ULW6 460 aaPredicted RBP13.22□□□□□ -0.29
LIG3-204ENST00000585740 LEMD3Q9Y2U8 911 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 SLC4A4Q9Y6R1 1079 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 CACNA1SQ13698 1873 aa13.22□□□□□ -0.29
LIG3-204ENST00000585740 SALL1Q9NSC2 1324 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 DUOX1Q9NRD9 1551 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 MAGEB6P1A0A0J9YX57 407 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 KLF18A0A0U1RQI7 1052 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 GSG1L2A8MUP6 293 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 CDKL5O76039 1030 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 TM4SF1P30408 202 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 HIBADHP31937 336 aaKnown RBP13.21□□□□□ -0.29
LIG3-204ENST00000585740 TDO2P48775 406 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 ANTXR2P58335 489 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 RESTQ13127 1097 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 CPLX2Q6PUV4 134 aaKnown RBP13.21□□□□□ -0.29
LIG3-204ENST00000585740 SMIM5Q71RC9 77 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 GAS2L3Q86XJ1 694 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 TBC1D10CQ8IV04 446 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 CHAMP1Q96JM3 812 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 ARMT1Q9H993 441 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 GDPD2Q9HCC8 539 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 RBM27Q9P2N5 1060 aaKnown RBP13.21□□□□□ -0.29
LIG3-204ENST00000585740 CFAP45Q9UL16 551 aa13.21□□□□□ -0.29
LIG3-204ENST00000585740 ANGEL1Q9UNK9 670 aaKnown RBP13.21□□□□□ -0.29
LIG3-204ENST00000585740 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.2□□□□□ -0.3
LIG3-204ENST00000585740 GOLGA8BA8MQT2 603 aa13.2□□□□□ -0.3
LIG3-204ENST00000585740 SH2B2O14492 632 aaPredicted RBP13.2□□□□□ -0.3
LIG3-204ENST00000585740 GADD45BO75293 160 aaPredicted RBP13.2□□□□□ -0.3
LIG3-204ENST00000585740 CTDNEP1O95476 244 aa13.2□□□□□ -0.3
LIG3-204ENST00000585740 POLD1P28340 1107 aa13.2□□□□□ -0.3
LIG3-204ENST00000585740 CCT2P78371 535 aaKnown RBP13.2□□□□□ -0.3
LIG3-204ENST00000585740 AKNAD1Q5T1N1 836 aa13.2□□□□□ -0.3
LIG3-204ENST00000585740 SPTY2D1Q68D10 685 aaPredicted RBP13.2□□□□□ -0.3
LIG3-204ENST00000585740 GIMAP6Q6P9H5 292 aa13.2□□□□□ -0.3
LIG3-204ENST00000585740 MFSD6Q6ZSS7 791 aa13.2□□□□□ -0.3
LIG3-204ENST00000585740 CHST3Q7LGC8 479 aa13.2□□□□□ -0.3
LIG3-204ENST00000585740 LCORLQ8N3X6 602 aa13.2□□□□□ -0.3
LIG3-204ENST00000585740 STAG1Q8WVM7 1258 aa13.2□□□□□ -0.3
LIG3-204ENST00000585740 DDX11Q96FC9 970 aa13.2□□□□□ -0.3
LIG3-204ENST00000585740 EPB41L4AQ9HCS5 686 aaPredicted RBP13.2□□□□□ -0.3
LIG3-204ENST00000585740 LRRC4BQ9NT99 713 aa13.2□□□□□ -0.3
LIG3-204ENST00000585740 ABCF2Q9UG63 623 aa13.2□□□□□ -0.3
LIG3-204ENST00000585740 COL1A1P02452 1464 aaPredicted RBP13.19□□□□□ -0.3
LIG3-204ENST00000585740 CPLX1O14810 134 aa13.19□□□□□ -0.3
LIG3-204ENST00000585740 PCP11498 1178 aaKnown RBP13.19□□□□□ -0.3
LIG3-204ENST00000585740 LIFRP42702 1097 aa13.19□□□□□ -0.3
LIG3-204ENST00000585740 SART3Q15020 963 aaKnown RBP13.19□□□□□ -0.3
LIG3-204ENST00000585740 C15orf52Q6ZUT6 534 aaKnown RBP13.19□□□□□ -0.3
LIG3-204ENST00000585740 SGMS1Q86VZ5 419 aa13.19□□□□□ -0.3
LIG3-204ENST00000585740 AMIGO3Q86WK7 504 aa13.19□□□□□ -0.3
LIG3-204ENST00000585740 NLGN2Q8NFZ4 835 aa13.19□□□□□ -0.3
LIG3-204ENST00000585740 RPGRQ92834 1020 aaKnown RBP13.19□□□□□ -0.3
LIG3-204ENST00000585740 ZNF396Q96N95 335 aaPredicted RBP13.19□□□□□ -0.3
LIG3-204ENST00000585740 NBPF3Q9H094 633 aa13.19□□□□□ -0.3
LIG3-204ENST00000585740 ANAPC4Q9UJX5 808 aa13.19□□□□□ -0.3
LIG3-204ENST00000585740 NSFL1CQ9UNZ2 370 aaKnown RBP13.19□□□□□ -0.3
LIG3-204ENST00000585740 XDHP47989 1333 aa13.18□□□□□ -0.3
LIG3-204ENST00000585740 GYS1P13807 737 aa13.18□□□□□ -0.3
LIG3-204ENST00000585740 NASPP49321 788 aaPredicted RBP13.18□□□□□ -0.3
LIG3-204ENST00000585740 NT5C2P49902 561 aa13.18□□□□□ -0.3
LIG3-204ENST00000585740 PRR5LQ6MZQ0 368 aa13.18□□□□□ -0.3
LIG3-204ENST00000585740 SYNE3Q6ZMZ3 975 aa13.18□□□□□ -0.3
LIG3-204ENST00000585740 TMC4Q7Z404 712 aa13.18□□□□□ -0.3
LIG3-204ENST00000585740 FERMT3Q86UX7 667 aa13.18□□□□□ -0.3
LIG3-204ENST00000585740 TMTC2Q8N394 836 aa13.18□□□□□ -0.3
LIG3-204ENST00000585740 SLC16A10Q8TF71 515 aa13.18□□□□□ -0.3
LIG3-204ENST00000585740 RBM17Q96I25 401 aaKnown RBP13.18□□□□□ -0.3
LIG3-204ENST00000585740 SPATA32Q96LK8 384 aa13.18□□□□□ -0.3
LIG3-204ENST00000585740 BRIP1Q9BX63 1249 aa13.18□□□□□ -0.3
LIG3-204ENST00000585740 TSPY26PQ9H489 355 aa13.18□□□□□ -0.3
LIG3-204ENST00000585740 BRPF3Q9ULD4 1205 aa13.18□□□□□ -0.3
LIG3-204ENST00000585740 LAMB1P07942 1786 aa13.17□□□□□ -0.3
LIG3-204ENST00000585740 SYCE3A1L190 88 aa13.17□□□□□ -0.3
LIG3-204ENST00000585740 GOLGA6L4A6NEF3 574 aa13.17□□□□□ -0.3
LIG3-204ENST00000585740 B4E1Z4 1266 aa13.17□□□□□ -0.3
LIG3-204ENST00000585740 SERPINB2P05120 415 aa13.17□□□□□ -0.3
LIG3-204ENST00000585740 YBX3P16989 372 aaKnown RBP eCLIP13.17□□□□□ -0.31e-6■■□□□ 11.7
LIG3-204ENST00000585740 METAP2P50579 478 aaKnown RBP eCLIP13.17□□□□□ -0.3
LIG3-204ENST00000585740 RCAN1P53805 252 aa13.17□□□□□ -0.3
LIG3-204ENST00000585740 CCDC173Q0VFZ6 552 aa13.17□□□□□ -0.3
LIG3-204ENST00000585740 TMEM67Q5HYA8 995 aa13.17□□□□□ -0.3
LIG3-204ENST00000585740 CYB5R4Q7L1T6 521 aa13.17□□□□□ -0.3
LIG3-204ENST00000585740 WDR66Q8TBY9 1149 aa13.17□□□□□ -0.3
LIG3-204ENST00000585740 NCOA5Q9HCD5 579 aaKnown RBP13.17□□□□□ -0.3
LIG3-204ENST00000585740 ORC3Q9UBD5 711 aaPredicted RBP13.17□□□□□ -0.3
LIG3-204ENST00000585740 IQSEC3Q9UPP2 1182 aaPredicted RBP13.17□□□□□ -0.3
LIG3-204ENST00000585740 HPS5Q9UPZ3 1129 aa13.17□□□□□ -0.3
LIG3-204ENST00000585740 NID2Q14112 1375 aa13.17□□□□□ -0.3
LIG3-204ENST00000585740 NEDD4P46934 1319 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 IRS2Q9Y4H2 1338 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 ERICH2A1L162 156 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 ZBTB43O43298 467 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 GRIN3BO60391 1043 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 ATP2B4P23634 1241 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 PPARAQ07869 468 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 CRY2Q49AN0 593 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 NFXL1Q6ZNB6 911 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 ZNF804AQ7Z570 1209 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms