RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 SH3TC2Q8TF17 1288 aa17.02■□□□□ 0.32
SS18-222ENST00000582792 IFIT1P09914 478 aaKnown RBP17.01■□□□□ 0.31
SS18-222ENST00000582792 PRMT2P55345 433 aa17.01■□□□□ 0.31
SS18-222ENST00000582792 PPATQ06203 517 aa17.01■□□□□ 0.31
SS18-222ENST00000582792 MRPL50Q8N5N7 158 aaKnown RBP17.01■□□□□ 0.31
SS18-222ENST00000582792 ZNF341Q9BYN7 854 aa17.01■□□□□ 0.31
SS18-222ENST00000582792 CEP290O15078 2479 aa17.01■□□□□ 0.31
SS18-222ENST00000582792 PTPRCP08575 1304 aa17■□□□□ 0.31
SS18-222ENST00000582792 MYCP01106 439 aaPredicted RBP17■□□□□ 0.31
SS18-222ENST00000582792 FXR1P51114 621 aaKnown RBP eCLIP17■□□□□ 0.31
SS18-222ENST00000582792 C17orf99Q6UX52 265 aa17■□□□□ 0.31
SS18-222ENST00000582792 MIGA2Q7L4E1 593 aa17■□□□□ 0.31
SS18-222ENST00000582792 MIER1Q8N108 512 aa17■□□□□ 0.31
SS18-222ENST00000582792 WDR66Q8TBY9 1149 aa17■□□□□ 0.31
SS18-222ENST00000582792 FAM151AQ8WW52 585 aa17■□□□□ 0.31
SS18-222ENST00000582792 MYH13Q9UKX3 1938 aa17■□□□□ 0.31
SS18-222ENST00000582792 ZNF521Q96K83 1311 aa16.99■□□□□ 0.31
SS18-222ENST00000582792 INPP5BP32019 993 aa16.99■□□□□ 0.31
SS18-222ENST00000582792 ANKRD23Q86SG2 305 aa16.99■□□□□ 0.31
SS18-222ENST00000582792 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.99■□□□□ 0.31
SS18-222ENST00000582792 USP44Q9H0E7 712 aa16.99■□□□□ 0.31
SS18-222ENST00000582792 FAM9BQ8IZU0 186 aa16.98■□□□□ 0.31
SS18-222ENST00000582792 LPIN2Q92539 896 aa16.98■□□□□ 0.31
SS18-222ENST00000582792 ZNF112Q9UJU3 913 aa16.98■□□□□ 0.31
SS18-222ENST00000582792 KCNH4Q9UQ05 1017 aa16.98■□□□□ 0.31
SS18-222ENST00000582792 COLQQ9Y215 455 aaPredicted RBP16.98■□□□□ 0.31
SS18-222ENST00000582792 ADGRA2Q96PE1 1338 aa16.97■□□□□ 0.31
SS18-222ENST00000582792 EYA2O00167 538 aa16.97■□□□□ 0.31
SS18-222ENST00000582792 PDHXO00330 501 aa16.97■□□□□ 0.31
SS18-222ENST00000582792 SLC5A1P13866 664 aa16.97■□□□□ 0.31
SS18-222ENST00000582792 CTGFP29279 349 aa16.97■□□□□ 0.31
SS18-222ENST00000582792 RFX5P48382 616 aaPredicted RBP16.97■□□□□ 0.31
SS18-222ENST00000582792 CDC42EP5Q6NZY7 148 aa16.97■□□□□ 0.31
SS18-222ENST00000582792 CPA4Q9UI42 421 aa16.97■□□□□ 0.31
SS18-222ENST00000582792 DAGLAQ9Y4D2 1042 aa16.97■□□□□ 0.31
SS18-222ENST00000582792 PSMC4P43686 418 aa16.96■□□□□ 0.31
SS18-222ENST00000582792 TCP10Q12799 353 aa16.96■□□□□ 0.31
SS18-222ENST00000582792 NOL9Q5SY16 702 aaKnown RBP16.96■□□□□ 0.31
SS18-222ENST00000582792 TRIM47Q96LD4 638 aa16.96■□□□□ 0.31
SS18-222ENST00000582792 SRRDQ9UH36 339 aa16.96■□□□□ 0.31
SS18-222ENST00000582792 RANBP2P49792 3224 aaKnown RBP16.96■□□□□ 0.31
SS18-222ENST00000582792 H0YGN5 161 aa16.95■□□□□ 0.3
SS18-222ENST00000582792 ECM2O94769 699 aaPredicted RBP16.95■□□□□ 0.3
SS18-222ENST00000582792 OSBPP22059 807 aa16.95■□□□□ 0.3
SS18-222ENST00000582792 HOXD10P28358 340 aa16.95■□□□□ 0.3
SS18-222ENST00000582792 NFIAQ12857 509 aa16.95■□□□□ 0.3
SS18-222ENST00000582792 MOGSQ13724 837 aa16.95■□□□□ 0.3
SS18-222ENST00000582792 MTFR1Q15390 333 aa16.95■□□□□ 0.3
SS18-222ENST00000582792 DIXDC1Q155Q3 683 aa16.95■□□□□ 0.3
SS18-222ENST00000582792 ATG9AQ7Z3C6 839 aa16.95■□□□□ 0.3
SS18-222ENST00000582792 SSH1Q8WYL5 1049 aa16.95■□□□□ 0.3
SS18-222ENST00000582792 SHISA4Q96DD7 197 aa16.95■□□□□ 0.3
SS18-222ENST00000582792 AK9Q5TCS8 1911 aa16.94■□□□□ 0.3
SS18-222ENST00000582792 PRDX5P30044 214 aa16.94■□□□□ 0.3
SS18-222ENST00000582792 FAM198AQ9UFP1 575 aa16.94■□□□□ 0.3
SS18-222ENST00000582792 FMNL1O95466 1100 aaPredicted RBP16.93■□□□□ 0.3
SS18-222ENST00000582792 GRK4P32298 578 aa16.93■□□□□ 0.3
SS18-222ENST00000582792 RAET1EQ8TD07 263 aa16.93■□□□□ 0.3
SS18-222ENST00000582792 USP40Q9NVE5 1235 aa16.93■□□□□ 0.3
SS18-222ENST00000582792 FBXO3Q9UK99 471 aa16.93■□□□□ 0.3
SS18-222ENST00000582792 SZT2Q5T011 3432 aa16.93■□□□□ 0.3
SS18-222ENST00000582792 TRIOBPQ9H2D6 2365 aa16.93■□□□□ 0.3
SS18-222ENST00000582792 MYPNQ86TC9 1320 aa16.93■□□□□ 0.3
SS18-222ENST00000582792 SALL1Q9NSC2 1324 aa16.93■□□□□ 0.3
SS18-222ENST00000582792 CXCL11O14625 94 aa16.92■□□□□ 0.3
SS18-222ENST00000582792 LDHBP07195 334 aaKnown RBP16.92■□□□□ 0.3
SS18-222ENST00000582792 ATP2B3Q16720 1220 aa16.92■□□□□ 0.3
SS18-222ENST00000582792 GPAT2Q6NUI2 795 aa16.92■□□□□ 0.3
SS18-222ENST00000582792 NKX2-3Q8TAU0 364 aa16.92■□□□□ 0.3
SS18-222ENST00000582792 PARK7Q99497 189 aaKnown RBP16.92■□□□□ 0.3
SS18-222ENST00000582792 GNL3LQ9NVN8 582 aaKnown RBP16.92■□□□□ 0.3
SS18-222ENST00000582792 ATRNL1Q5VV63 1379 aa16.91■□□□□ 0.3
SS18-222ENST00000582792 E9PSI1 815 aa16.91■□□□□ 0.3
SS18-222ENST00000582792 CIAO1O76071 339 aa16.91■□□□□ 0.3
SS18-222ENST00000582792 BCRP11274 1271 aa16.91■□□□□ 0.3
SS18-222ENST00000582792 GJA8P48165 433 aa16.91■□□□□ 0.3
SS18-222ENST00000582792 ZFPM1Q8IX07 1006 aa16.91■□□□□ 0.3
SS18-222ENST00000582792 SIL1Q9H173 461 aa16.91■□□□□ 0.3
SS18-222ENST00000582792 DOCK2Q92608 1830 aa16.91■□□□□ 0.3
SS18-222ENST00000582792 PHF20L1A8MW92 1017 aa16.9■□□□□ 0.3
SS18-222ENST00000582792 SEMA3EO15041 775 aa16.9■□□□□ 0.3
SS18-222ENST00000582792 GJB1P08034 283 aa16.9■□□□□ 0.3
SS18-222ENST00000582792 CCL5P13501 91 aa16.9■□□□□ 0.3
SS18-222ENST00000582792 FCGRTP55899 365 aa16.9■□□□□ 0.3
SS18-222ENST00000582792 UBE2Q1Q7Z7E8 422 aa16.9■□□□□ 0.3
SS18-222ENST00000582792 CEP126Q9P2H0 1117 aa16.9■□□□□ 0.3
SS18-222ENST00000582792 DENND2AQ9ULE3 1009 aa16.9■□□□□ 0.3
SS18-222ENST00000582792 MGAMO43451 1857 aa16.9■□□□□ 0.3
SS18-222ENST00000582792 ZBTB22O15209 634 aa16.89■□□□□ 0.29
SS18-222ENST00000582792 ENTPD3O75355 529 aa16.89■□□□□ 0.29
SS18-222ENST00000582792 CYP2C8P10632 490 aa16.89■□□□□ 0.29
SS18-222ENST00000582792 PHKA1P46020 1223 aa16.89■□□□□ 0.29
SS18-222ENST00000582792 PRKCZQ05513 592 aa16.89■□□□□ 0.29
SS18-222ENST00000582792 ALDH1L2Q3SY69 923 aa16.89■□□□□ 0.29
SS18-222ENST00000582792 CHRDL2Q6WN34 429 aa16.89■□□□□ 0.29
SS18-222ENST00000582792 FASTKD5Q7L8L6 764 aaKnown RBP16.89■□□□□ 0.29
SS18-222ENST00000582792 SCYL3Q8IZE3 742 aa16.89■□□□□ 0.29
SS18-222ENST00000582792 DPF3Q92784 378 aa16.89■□□□□ 0.29
SS18-222ENST00000582792 IDI2Q9BXS1 227 aa16.89■□□□□ 0.29
SS18-222ENST00000582792 BIN2Q9UBW5 565 aaPredicted RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms