RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 PRDX5P30044 214 aa25.39■■□□□ 1.66
SHMT1-209ENST00000582653 TFCP2Q12800 502 aa25.39■■□□□ 1.66
SHMT1-209ENST00000582653 ZKSCAN2Q63HK3 967 aa25.39■■□□□ 1.66
SHMT1-209ENST00000582653 FAM151AQ8WW52 585 aa25.39■■□□□ 1.66
SHMT1-209ENST00000582653 LDHBP07195 334 aaKnown RBP25.38■■□□□ 1.65
SHMT1-209ENST00000582653 DIXDC1Q155Q3 683 aa25.38■■□□□ 1.65
SHMT1-209ENST00000582653 CCDC102BQ68D86 513 aa25.38■■□□□ 1.65
SHMT1-209ENST00000582653 OTOP1Q7RTM1 612 aa25.38■■□□□ 1.65
SHMT1-209ENST00000582653 ERO1AQ96HE7 468 aa25.38■■□□□ 1.65
SHMT1-209ENST00000582653 DAGLAQ9Y4D2 1042 aa25.38■■□□□ 1.65
SHMT1-209ENST00000582653 TRIM17Q9Y577 477 aa25.38■■□□□ 1.65
SHMT1-209ENST00000582653 CCL15-CCL14A0A0B4J2E2 113 aa25.37■■□□□ 1.65
SHMT1-209ENST00000582653 PNMA6EA0A0J9YXQ4 647 aa25.37■■□□□ 1.65
SHMT1-209ENST00000582653 SPDYE5A6NIY4 337 aa25.37■■□□□ 1.65
SHMT1-209ENST00000582653 SP3Q02447 781 aa25.37■■□□□ 1.65
SHMT1-209ENST00000582653 CCL15Q16663 113 aa25.37■■□□□ 1.65
SHMT1-209ENST00000582653 DCAF15Q66K64 600 aa25.37■■□□□ 1.65
SHMT1-209ENST00000582653 CDC42EP5Q6NZY7 148 aa25.37■■□□□ 1.65
SHMT1-209ENST00000582653 ERO1BQ86YB8 467 aa25.37■■□□□ 1.65
SHMT1-209ENST00000582653 BRI3BPQ8WY22 251 aa25.37■■□□□ 1.65
SHMT1-209ENST00000582653 MYH13Q9UKX3 1938 aa25.37■■□□□ 1.65
SHMT1-209ENST00000582653 A0A1B0GUL7 405 aa25.36■■□□□ 1.65
SHMT1-209ENST00000582653 ZKSCAN4Q969J2 545 aaPredicted RBP25.36■■□□□ 1.65
SHMT1-209ENST00000582653 OTUD5Q96G74 571 aa25.36■■□□□ 1.65
SHMT1-209ENST00000582653 WRNIP1Q96S55 665 aa25.36■■□□□ 1.65
SHMT1-209ENST00000582653 SNCAIPQ9Y6H5 919 aa25.36■■□□□ 1.65
SHMT1-209ENST00000582653 RPAP1Q9BWH6 1393 aaPredicted RBP25.35■■□□□ 1.65
SHMT1-209ENST00000582653 MIGA2Q7L4E1 593 aa25.35■■□□□ 1.65
SHMT1-209ENST00000582653 ZNF341Q9BYN7 854 aa25.35■■□□□ 1.65
SHMT1-209ENST00000582653 ZFYVE28Q9HCC9 887 aa25.35■■□□□ 1.65
SHMT1-209ENST00000582653 AKAP2Q9Y2D5 859 aa25.35■■□□□ 1.65
SHMT1-209ENST00000582653 TNRC18O15417 2968 aaPredicted RBP25.35■■□□□ 1.65
SHMT1-209ENST00000582653 OTOFQ9HC10 1997 aa25.35■■□□□ 1.65
SHMT1-209ENST00000582653 ZGPATQ8N5A5 531 aaKnown RBP25.34■■□□□ 1.65
SHMT1-209ENST00000582653 CD99L2Q8TCZ2 262 aa25.34■■□□□ 1.65
SHMT1-209ENST00000582653 XAGE2Q96GT9 111 aa25.34■■□□□ 1.65
SHMT1-209ENST00000582653 USP40Q9NVE5 1235 aa25.34■■□□□ 1.65
SHMT1-209ENST00000582653 CETPP11597 493 aa25.33■■□□□ 1.65
SHMT1-209ENST00000582653 RASGRF1Q13972 1273 aa25.33■■□□□ 1.65
SHMT1-209ENST00000582653 NEUROD6Q96NK8 337 aa25.33■■□□□ 1.65
SHMT1-209ENST00000582653 ZNF112Q9UJU3 913 aa25.33■■□□□ 1.65
SHMT1-209ENST00000582653 PTPN22Q9Y2R2 807 aa25.33■■□□□ 1.65
SHMT1-209ENST00000582653 IRF6O14896 467 aa25.32■■□□□ 1.64
SHMT1-209ENST00000582653 TCP10Q12799 353 aa25.32■■□□□ 1.64
SHMT1-209ENST00000582653 NFIAQ12857 509 aa25.32■■□□□ 1.64
SHMT1-209ENST00000582653 TAF1CQ15572 869 aaPredicted RBP25.32■■□□□ 1.64
SHMT1-209ENST00000582653 FAM43AQ8N2R8 423 aa25.32■■□□□ 1.64
SHMT1-209ENST00000582653 EFCC1Q9HA90 598 aa25.32■■□□□ 1.64
SHMT1-209ENST00000582653 PPATQ06203 517 aa25.31■■□□□ 1.64
SHMT1-209ENST00000582653 PPIL2Q13356 520 aa25.31■■□□□ 1.64
SHMT1-209ENST00000582653 FAM163AQ96GL9 167 aaPredicted RBP25.31■■□□□ 1.64
SHMT1-209ENST00000582653 ZCCHC17Q9NP64 241 aaKnown RBP25.31■■□□□ 1.64
SHMT1-209ENST00000582653 FAM198AQ9UFP1 575 aa25.31■■□□□ 1.64
SHMT1-209ENST00000582653 PDS5AQ29RF7 1337 aaKnown RBP25.31■■□□□ 1.64
SHMT1-209ENST00000582653 WDHD1O75717 1129 aaPredicted RBP25.3■■□□□ 1.64
SHMT1-209ENST00000582653 RLBP1P12271 317 aa25.3■■□□□ 1.64
SHMT1-209ENST00000582653 G3BP1Q13283 466 aaKnown RBP eCLIP25.3■■□□□ 1.64
SHMT1-209ENST00000582653 SNAPC2Q13487 334 aa25.3■■□□□ 1.64
SHMT1-209ENST00000582653 C1orf115Q9H7X2 142 aa25.3■■□□□ 1.64
SHMT1-209ENST00000582653 INPP5BP32019 993 aa25.29■■□□□ 1.64
SHMT1-209ENST00000582653 MVPQ14764 893 aaKnown RBP25.29■■□□□ 1.64
SHMT1-209ENST00000582653 ARHGEF6Q15052 776 aa25.29■■□□□ 1.64
SHMT1-209ENST00000582653 IDI2Q9BXS1 227 aa25.29■■□□□ 1.64
SHMT1-209ENST00000582653 ABCF2Q9UG63 623 aa25.29■■□□□ 1.64
SHMT1-209ENST00000582653 ZBED9Q6R2W3 1325 aa25.29■■□□□ 1.64
SHMT1-209ENST00000582653 CAP1Q01518 475 aa25.28■■□□□ 1.64
SHMT1-209ENST00000582653 SPTY2D1Q68D10 685 aaPredicted RBP25.28■■□□□ 1.64
SHMT1-209ENST00000582653 ZFPM1Q8IX07 1006 aa25.28■■□□□ 1.64
SHMT1-209ENST00000582653 SLF2Q8IX21 1173 aa25.28■■□□□ 1.64
SHMT1-209ENST00000582653 FTSJ3Q8IY81 847 aaKnown RBP25.28■■□□□ 1.64
SHMT1-209ENST00000582653 BTBD19C9JJ37 291 aa25.27■■□□□ 1.64
SHMT1-209ENST00000582653 TLR2O60603 784 aa25.27■■□□□ 1.64
SHMT1-209ENST00000582653 ITPRIPQ8IWB1 547 aa25.27■■□□□ 1.64
SHMT1-209ENST00000582653 GAKO14976 1311 aa25.27■■□□□ 1.64
SHMT1-209ENST00000582653 ENTPD3O75355 529 aa25.26■■□□□ 1.63
SHMT1-209ENST00000582653 ATP8B2P98198 1209 aa25.26■■□□□ 1.63
SHMT1-209ENST00000582653 POLA2Q14181 598 aa25.26■■□□□ 1.63
SHMT1-209ENST00000582653 GORABQ5T7V8 394 aa25.26■■□□□ 1.63
SHMT1-209ENST00000582653 PI16Q6UXB8 463 aa25.26■■□□□ 1.63
SHMT1-209ENST00000582653 DZIP1Q86YF9 867 aaKnown RBP25.26■■□□□ 1.63
SHMT1-209ENST00000582653 ZBTB7BO15156 539 aaPredicted RBP25.25■■□□□ 1.63
SHMT1-209ENST00000582653 HMG20BQ9P0W2 317 aa25.25■■□□□ 1.63
SHMT1-209ENST00000582653 RGS3P49796 1198 aa25.24■■□□□ 1.63
SHMT1-209ENST00000582653 MAP3K10Q02779 954 aa25.24■■□□□ 1.63
SHMT1-209ENST00000582653 NOL9Q5SY16 702 aaKnown RBP25.24■■□□□ 1.63
SHMT1-209ENST00000582653 SSH3Q8TE77 659 aa25.24■■□□□ 1.63
SHMT1-209ENST00000582653 KCNH4Q9UQ05 1017 aa25.24■■□□□ 1.63
SHMT1-209ENST00000582653 TBC1D9Q6ZT07 1266 aa25.23■■□□□ 1.63
SHMT1-209ENST00000582653 ERICH6Q7L0X2 663 aa25.23■■□□□ 1.63
SHMT1-209ENST00000582653 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.23■■□□□ 1.63
SHMT1-209ENST00000582653 ARMC5Q96C12 935 aa25.23■■□□□ 1.63
SHMT1-209ENST00000582653 MECOMQ03112 1051 aa25.22■■□□□ 1.63
SHMT1-209ENST00000582653 ANKRD23Q86SG2 305 aa25.22■■□□□ 1.63
SHMT1-209ENST00000582653 SPATA5Q8NB90 893 aa25.22■■□□□ 1.63
SHMT1-209ENST00000582653 HTTP42858 3142 aa25.21■■□□□ 1.63
SHMT1-209ENST00000582653 GPR75-ASB3A0A0A6YYF3 556 aa25.21■■□□□ 1.63
SHMT1-209ENST00000582653 PHF20L1A8MW92 1017 aa25.21■■□□□ 1.63
SHMT1-209ENST00000582653 SURF6O75683 361 aaKnown RBP25.21■■□□□ 1.63
SHMT1-209ENST00000582653 OS9Q13438 667 aaPredicted RBP25.21■■□□□ 1.63
SHMT1-209ENST00000582653 SH3BP5LQ7L8J4 393 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms