RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 CNNM1Q9NRU3 951 aa12.45□□□□□ -0.42
SS18-210ENST00000578700 ZNF70Q9UC06 446 aaPredicted RBP12.45□□□□□ -0.42
SS18-210ENST00000578700 TTF2Q9UNY4 1162 aaKnown RBP12.45□□□□□ -0.42
SS18-210ENST00000578700 PTCH2Q9Y6C5 1203 aa12.45□□□□□ -0.42
SS18-210ENST00000578700 RANBP2P49792 3224 aaKnown RBP12.45□□□□□ -0.42
SS18-210ENST00000578700 OTOFQ9HC10 1997 aa12.45□□□□□ -0.42
SS18-210ENST00000578700 TESPA1A2RU30 521 aaPredicted RBP12.44□□□□□ -0.42
SS18-210ENST00000578700 TNFAIP1Q13829 316 aa12.44□□□□□ -0.42
SS18-210ENST00000578700 CCDC57Q2TAC2 916 aa12.44□□□□□ -0.42
SS18-210ENST00000578700 HSP90AB4PQ58FF6 505 aa12.44□□□□□ -0.42
SS18-210ENST00000578700 LDHAL6AQ6ZMR3 332 aa12.44□□□□□ -0.42
SS18-210ENST00000578700 CDAN1Q8IWY9 1227 aa12.44□□□□□ -0.42
SS18-210ENST00000578700 BRI3BPQ8WY22 251 aa12.44□□□□□ -0.42
SS18-210ENST00000578700 OTUD5Q96G74 571 aa12.44□□□□□ -0.42
SS18-210ENST00000578700 ZNF333Q96JL9 665 aa12.44□□□□□ -0.42
SS18-210ENST00000578700 MS4A4AQ96JQ5 239 aa12.44□□□□□ -0.42
SS18-210ENST00000578700 LNPKQ9C0E8 428 aa12.44□□□□□ -0.42
SS18-210ENST00000578700 IRS2Q9Y4H2 1338 aa12.43□□□□□ -0.42
SS18-210ENST00000578700 GRM8O00222 908 aa12.43□□□□□ -0.42
SS18-210ENST00000578700 EIF5BO60841 1220 aaKnown RBP12.43□□□□□ -0.42
SS18-210ENST00000578700 ANP32AP39687 249 aaKnown RBP12.43□□□□□ -0.42
SS18-210ENST00000578700 FKBP1AP62942 108 aaKnown RBP12.43□□□□□ -0.42
SS18-210ENST00000578700 MAP3K9P80192 1104 aa12.43□□□□□ -0.42
SS18-210ENST00000578700 FOXO4P98177 505 aa12.43□□□□□ -0.42
SS18-210ENST00000578700 MFSD14BQ5SR56 506 aa12.43□□□□□ -0.42
SS18-210ENST00000578700 LMBR1LQ6UX01 489 aa12.43□□□□□ -0.42
SS18-210ENST00000578700 C15orf52Q6ZUT6 534 aaKnown RBP12.43□□□□□ -0.42
SS18-210ENST00000578700 FAM43AQ8N2R8 423 aa12.43□□□□□ -0.42
SS18-210ENST00000578700 SH3TC2Q8TF17 1288 aa12.43□□□□□ -0.42
SS18-210ENST00000578700 TMEM39BQ9GZU3 492 aa12.43□□□□□ -0.42
SS18-210ENST00000578700 UPF2Q9HAU5 1272 aaKnown RBP12.43□□□□□ -0.42
SS18-210ENST00000578700 CSADQ9Y600 493 aa12.43□□□□□ -0.42
SS18-210ENST00000578700 TRIOBPQ9H2D6 2365 aa12.43□□□□□ -0.42
SS18-210ENST00000578700 WDHD1O75717 1129 aaPredicted RBP12.42□□□□□ -0.42
SS18-210ENST00000578700 GYG1P46976 350 aa12.42□□□□□ -0.42
SS18-210ENST00000578700 GTF2A2P52657 109 aa12.42□□□□□ -0.42
SS18-210ENST00000578700 VGLL4Q14135 290 aa12.42□□□□□ -0.42
SS18-210ENST00000578700 KIF22Q14807 665 aa12.42□□□□□ -0.42
SS18-210ENST00000578700 SPDYE2Q495Y8 402 aa12.42□□□□□ -0.42
SS18-210ENST00000578700 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.42□□□□□ -0.42
SS18-210ENST00000578700 A0A0C4DFX4 3053 aa12.41□□□□□ -0.42
SS18-210ENST00000578700 H0YGN5 161 aa12.41□□□□□ -0.42
SS18-210ENST00000578700 SRGAP3O43295 1099 aa12.41□□□□□ -0.42
SS18-210ENST00000578700 RAB11FIP3O75154 756 aa12.41□□□□□ -0.42
SS18-210ENST00000578700 NBPF7P0C2Y1 421 aaPredicted RBP12.41□□□□□ -0.42
SS18-210ENST00000578700 HIBADHP31937 336 aaKnown RBP12.41□□□□□ -0.42
SS18-210ENST00000578700 CRKP46108 304 aa12.41□□□□□ -0.42
SS18-210ENST00000578700 TNNI2P48788 182 aa12.41□□□□□ -0.42
SS18-210ENST00000578700 CHAF1AQ13111 956 aaPredicted RBP12.41□□□□□ -0.42
SS18-210ENST00000578700 EPHA10Q5JZY3 1008 aa12.41□□□□□ -0.42
SS18-210ENST00000578700 DPF3Q92784 378 aa12.41□□□□□ -0.42
SS18-210ENST00000578700 LRRCC1Q9C099 1032 aa12.41□□□□□ -0.42
SS18-210ENST00000578700 ARHGAP39Q9C0H5 1083 aa12.41□□□□□ -0.42
SS18-210ENST00000578700 IQSEC3Q9UPP2 1182 aaPredicted RBP12.41□□□□□ -0.42
SS18-210ENST00000578700 APBB1O00213 710 aa12.4□□□□□ -0.42
SS18-210ENST00000578700 FRAT2O75474 233 aaPredicted RBP12.4□□□□□ -0.42
SS18-210ENST00000578700 CACNB3P54284 484 aa12.4□□□□□ -0.42
SS18-210ENST00000578700 OS9Q13438 667 aaPredicted RBP12.4□□□□□ -0.42
SS18-210ENST00000578700 VPS37DQ86XT2 251 aa12.4□□□□□ -0.42
SS18-210ENST00000578700 TDRD7Q8NHU6 1098 aaKnown RBP12.4□□□□□ -0.42
SS18-210ENST00000578700 SSH3Q8TE77 659 aa12.4□□□□□ -0.42
SS18-210ENST00000578700 TEPSINQ96N21 525 aa12.4□□□□□ -0.42
SS18-210ENST00000578700 SERPINA10Q9UK55 444 aa12.4□□□□□ -0.42
SS18-210ENST00000578700 UTYO14607 1347 aa12.39□□□□□ -0.43
SS18-210ENST00000578700 FAM205AQ6ZU69 1335 aa12.39□□□□□ -0.43
SS18-210ENST00000578700 MTX1Q13505 466 aa12.39□□□□□ -0.43
SS18-210ENST00000578700 GRIK5Q16478 980 aa12.39□□□□□ -0.43
SS18-210ENST00000578700 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.39□□□□□ -0.43
SS18-210ENST00000578700 PUS3Q9BZE2 481 aaKnown RBP12.39□□□□□ -0.43
SS18-210ENST00000578700 RNF39Q9H2S5 420 aa12.39□□□□□ -0.43
SS18-210ENST00000578700 ARAP2Q8WZ64 1704 aa12.39□□□□□ -0.43
SS18-210ENST00000578700 PNMA6EA0A0J9YXQ4 647 aa12.38□□□□□ -0.43
SS18-210ENST00000578700 BTBD19C9JJ37 291 aa12.38□□□□□ -0.43
SS18-210ENST00000578700 TLR2O60603 784 aa12.38□□□□□ -0.43
SS18-210ENST00000578700 SURF6O75683 361 aaKnown RBP12.38□□□□□ -0.43
SS18-210ENST00000578700 CETPP11597 493 aa12.38□□□□□ -0.43
SS18-210ENST00000578700 UBE4AQ14139 1066 aa12.38□□□□□ -0.43
SS18-210ENST00000578700 POLA2Q14181 598 aa12.38□□□□□ -0.43
SS18-210ENST00000578700 BMP2KLQ5H9B9 411 aa12.38□□□□□ -0.43
SS18-210ENST00000578700 CHRDL2Q6WN34 429 aa12.38□□□□□ -0.43
SS18-210ENST00000578700 ERC1Q8IUD2 1116 aa12.38□□□□□ -0.43
SS18-210ENST00000578700 ZKSCAN4Q969J2 545 aaPredicted RBP12.38□□□□□ -0.43
SS18-210ENST00000578700 FAM84BQ96KN1 310 aaPredicted RBP12.38□□□□□ -0.43
SS18-210ENST00000578700 WRNIP1Q96S55 665 aa12.38□□□□□ -0.43
SS18-210ENST00000578700 BCL11AQ9H165 835 aa12.38□□□□□ -0.43
SS18-210ENST00000578700 EXOC6BQ9Y2D4 811 aa12.38□□□□□ -0.43
SS18-210ENST00000578700 LACTBP83111 547 aaPredicted RBP12.37□□□□□ -0.43
SS18-210ENST00000578700 MTFR1Q15390 333 aa12.37□□□□□ -0.43
SS18-210ENST00000578700 C8orf34Q49A92 452 aa12.37□□□□□ -0.43
SS18-210ENST00000578700 MIGA2Q7L4E1 593 aa12.37□□□□□ -0.43
SS18-210ENST00000578700 TMOD2Q9NZR1 351 aa12.37□□□□□ -0.43
SS18-210ENST00000578700 BIN2Q9UBW5 565 aaPredicted RBP12.37□□□□□ -0.43
SS18-210ENST00000578700 CPA4Q9UI42 421 aa12.37□□□□□ -0.43
SS18-210ENST00000578700 COL6A3P12111 3177 aa12.36□□□□□ -0.43
SS18-210ENST00000578700 SPDYE5A6NIY4 337 aa12.36□□□□□ -0.43
SS18-210ENST00000578700 IRF6O14896 467 aa12.36□□□□□ -0.43
SS18-210ENST00000578700 FMNL1O95466 1100 aaPredicted RBP12.36□□□□□ -0.43
SS18-210ENST00000578700 PSMC4P43686 418 aa12.36□□□□□ -0.43
SS18-210ENST00000578700 SNAPC2Q13487 334 aa12.36□□□□□ -0.43
SS18-210ENST00000578700 CASC1Q6TDU7 716 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 117.3 ms