RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 STRN4Q9NRL3 753 aa11.02□□□□□ -0.65
CCDC40-212ENST00000574799 CCT2P78371 535 aaKnown RBP11.01□□□□□ -0.65
CCDC40-212ENST00000574799 KIF4BQ2VIQ3 1234 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 RNF216Q9NWF9 866 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-212ENST00000574799 EPB41L2O43491 1005 aaKnown RBP11.01□□□□□ -0.65
CCDC40-212ENST00000574799 GOLGA8FQ08AF8 430 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 GOLGA8DPQ0D2H9 430 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 LONRF2Q1L5Z9 754 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 KCNB2Q92953 911 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 PARD6BQ9BYG5 372 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 BOLA2Q9H3K6 86 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 L2HGDHQ9H9P8 463 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 ECHDC1Q9NTX5 307 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 ATP8B1O43520 1251 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 RHOXF2BP0C7M4 288 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 FAM160A1Q05DH4 1040 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 RIC3Q7Z5B4 369 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 NCAPGQ9BPX3 1015 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 RHOXF2Q9BQY4 288 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 COPRSQ9NQ92 184 aa11.01□□□□□ -0.65
CCDC40-212ENST00000574799 EIF3CLB5ME19 914 aaKnown RBP11□□□□□ -0.65
CCDC40-212ENST00000574799 USP8P40818 1118 aa11□□□□□ -0.65
CCDC40-212ENST00000574799 ST3GAL1Q11201 340 aa11□□□□□ -0.65
CCDC40-212ENST00000574799 ANKRD20A12PQ8NF67 263 aa11□□□□□ -0.65
CCDC40-212ENST00000574799 EIF3CQ99613 913 aaKnown RBP11□□□□□ -0.65
CCDC40-212ENST00000574799 DBNLQ9UJU6 430 aaKnown RBP11□□□□□ -0.65
CCDC40-212ENST00000574799 TAF1P21675 1872 aa11□□□□□ -0.65
CCDC40-212ENST00000574799 MED23Q9ULK4 1368 aa11□□□□□ -0.65
CCDC40-212ENST00000574799 CLGNO14967 610 aa11□□□□□ -0.65
CCDC40-212ENST00000574799 MAGEA9P43362 315 aa11□□□□□ -0.65
CCDC40-212ENST00000574799 G3BP1Q13283 466 aaKnown RBP eCLIP11□□□□□ -0.65
CCDC40-212ENST00000574799 MRPS27Q92552 414 aaKnown RBP11□□□□□ -0.65
CCDC40-212ENST00000574799 BRMS1Q9HCU9 246 aa11□□□□□ -0.65
CCDC40-212ENST00000574799 GEMIN8Q9NWZ8 242 aaKnown RBP11□□□□□ -0.65
CCDC40-212ENST00000574799 DOCK2Q92608 1830 aa11□□□□□ -0.65
CCDC40-212ENST00000574799 HIP1O00291 1037 aa11□□□□□ -0.65
CCDC40-212ENST00000574799 FANCCQ00597 558 aa11□□□□□ -0.65
CCDC40-212ENST00000574799 HDXQ7Z353 690 aa11□□□□□ -0.65
CCDC40-212ENST00000574799 NBPF11Q86T75 865 aa11□□□□□ -0.65
CCDC40-212ENST00000574799 EDC3Q96F86 508 aaKnown RBP11□□□□□ -0.65
CCDC40-212ENST00000574799 FAM227BQ96M60 508 aa11□□□□□ -0.65
CCDC40-212ENST00000574799 CCDC8Q9H0W5 538 aaPredicted RBP11□□□□□ -0.65
CCDC40-212ENST00000574799 TADA3O75528 432 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 RDXP35241 583 aaKnown RBP10.99□□□□□ -0.65
CCDC40-212ENST00000574799 UBE3BQ7Z3V4 1068 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 SMARCC1Q92922 1105 aaPredicted RBP10.99□□□□□ -0.65
CCDC40-212ENST00000574799 FAN1Q9Y2M0 1017 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 NDUFB9Q9Y6M9 179 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 POLR3DP05423 398 aaPredicted RBP10.99□□□□□ -0.65
CCDC40-212ENST00000574799 NMIQ13287 307 aaPredicted RBP10.99□□□□□ -0.65
CCDC40-212ENST00000574799 ERC1Q8IUD2 1116 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 TM6SF1Q9BZW5 370 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 RABEP2Q9H5N1 569 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 SLC27A2O14975 620 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 TBC1D8O95759 1140 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 AKAP17AQ02040 695 aaKnown RBP10.99□□□□□ -0.65
CCDC40-212ENST00000574799 DPCR1Q3MIW9 517 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 ARMCX5Q6P1M9 558 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 TTC5Q8N0Z6 440 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 MPHOSPH8Q99549 860 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 YY1AP1Q9H869 796 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 LZTFL1Q9NQ48 299 aa10.99□□□□□ -0.65
CCDC40-212ENST00000574799 MYH15Q9Y2K3 1946 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 WDHD1O75717 1129 aaPredicted RBP10.98□□□□□ -0.65
CCDC40-212ENST00000574799 GUCY2CP25092 1073 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 CHMP4BP1P59074 171 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 EVI5LQ96CN4 794 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 ISCA1Q9BUE6 129 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 PHLPP2Q6ZVD8 1323 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 ZNF609O15014 1411 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 SBF2Q86WG5 1849 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 SASH3O75995 380 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 MAP2K2P36507 400 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 NOP2P46087 812 aaKnown RBP10.98□□□□□ -0.65
CCDC40-212ENST00000574799 SYNE4Q8N205 404 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 GIMAP7Q8NHV1 300 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 USP28Q96RU2 1077 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 RIC1Q4ADV7 1423 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 GOLGA6L9A6NEM1 432 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 KIF5CO60282 957 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 DDX58O95786 925 aaKnown RBP10.98□□□□□ -0.65
CCDC40-212ENST00000574799 CPLX3Q8WVH0 158 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 GBP3Q9H0R5 595 aa10.98□□□□□ -0.65
CCDC40-212ENST00000574799 TAF1LQ8IZX4 1826 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 A0A0D9SFI3 127 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 CPLX1O14810 134 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 ZRANB2O95218 330 aaKnown RBP eCLIP10.97□□□□□ -0.65
CCDC40-212ENST00000574799 MYCNP04198 464 aaPredicted RBP10.97□□□□□ -0.65
CCDC40-212ENST00000574799 RPS6KB1P23443 525 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 TFCP2Q12800 502 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 DNAJC21Q5F1R6 531 aaKnown RBP10.97□□□□□ -0.65
CCDC40-212ENST00000574799 Q6ZUG5 572 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 DHX40Q8IX18 779 aaKnown RBP10.97□□□□□ -0.65
CCDC40-212ENST00000574799 NEK1Q96PY6 1258 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 THSD7AQ9UPZ6 1657 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 KRT32Q14532 448 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 NECTIN1Q15223 517 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 CT47A1Q5JQC4 288 aaPredicted RBP10.97□□□□□ -0.65
CCDC40-212ENST00000574799 ZNF589Q86UQ0 364 aaPredicted RBP10.97□□□□□ -0.65
CCDC40-212ENST00000574799 OSBPL5Q9H0X9 879 aaPredicted RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 189.1 ms