RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 GOLGA8AA7E2F4 631 aa19.71■□□□□ 0.75
VPS53-215ENST00000573028 FOXN1O15353 648 aa19.71■□□□□ 0.75
VPS53-215ENST00000573028 URI1O94763 535 aaPredicted RBP19.71■□□□□ 0.75
VPS53-215ENST00000573028 MYL5Q02045 173 aa19.71■□□□□ 0.75
VPS53-215ENST00000573028 LONRF3Q496Y0 759 aa19.71■□□□□ 0.75
VPS53-215ENST00000573028 APOA5Q6Q788 366 aa19.71■□□□□ 0.75
VPS53-215ENST00000573028 JMYQ8N9B5 988 aa19.71■□□□□ 0.75
VPS53-215ENST00000573028 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.71■□□□□ 0.75
VPS53-215ENST00000573028 GREM2Q9H772 168 aa19.71■□□□□ 0.75
VPS53-215ENST00000573028 MYH15Q9Y2K3 1946 aa19.71■□□□□ 0.75
VPS53-215ENST00000573028 ZBTB43O43298 467 aa19.71■□□□□ 0.75
VPS53-215ENST00000573028 KIF20AO95235 890 aa19.71■□□□□ 0.75
VPS53-215ENST00000573028 KIF6Q6ZMV9 814 aa19.71■□□□□ 0.75
VPS53-215ENST00000573028 PIH1D3Q9NQM4 214 aaKnown RBP19.71■□□□□ 0.75
VPS53-215ENST00000573028 PCDH11XQ9BZA7 1347 aa19.71■□□□□ 0.75
VPS53-215ENST00000573028 PCDH11YQ9BZA8 1340 aa19.71■□□□□ 0.75
VPS53-215ENST00000573028 ITGA6P23229 1130 aa19.7■□□□□ 0.74
VPS53-215ENST00000573028 ARHGAP29Q52LW3 1261 aa19.7■□□□□ 0.74
VPS53-215ENST00000573028 TMEM67Q5HYA8 995 aa19.7■□□□□ 0.74
VPS53-215ENST00000573028 ZMYM6O95789 1325 aa19.7■□□□□ 0.74
VPS53-215ENST00000573028 ZNF532Q9HCE3 1301 aa19.7■□□□□ 0.74
VPS53-215ENST00000573028 TOP1P11387 765 aaKnown RBP19.7■□□□□ 0.74
VPS53-215ENST00000573028 DNAJC10Q8IXB1 793 aa19.7■□□□□ 0.74
VPS53-215ENST00000573028 FBXL16Q8N461 479 aa19.7■□□□□ 0.74
VPS53-215ENST00000573028 ISCA1Q9BUE6 129 aa19.7■□□□□ 0.74
VPS53-215ENST00000573028 CMTR1Q8N1G2 835 aaKnown RBP19.7■□□□□ 0.74
VPS53-215ENST00000573028 ZKSCAN3Q9BRR0 538 aa19.7■□□□□ 0.74
VPS53-215ENST00000573028 PCDHA5Q9Y5H7 936 aa19.7■□□□□ 0.74
VPS53-215ENST00000573028 CDKL5O76039 1030 aa19.69■□□□□ 0.74
VPS53-215ENST00000573028 CTDSPL2Q05D32 466 aa19.69■□□□□ 0.74
VPS53-215ENST00000573028 TRPM3Q9HCF6 1732 aaPredicted RBP19.69■□□□□ 0.74
VPS53-215ENST00000573028 WWC3Q9ULE0 1092 aa19.69■□□□□ 0.74
VPS53-215ENST00000573028 PSDA5PKW4 1024 aaPredicted RBP19.69■□□□□ 0.74
VPS53-215ENST00000573028 ADD2P35612 726 aa19.69■□□□□ 0.74
VPS53-215ENST00000573028 ZNF827Q17R98 1081 aa19.69■□□□□ 0.74
VPS53-215ENST00000573028 MNS1Q8NEH6 495 aa19.69■□□□□ 0.74
VPS53-215ENST00000573028 AIDAQ96BJ3 306 aa19.69■□□□□ 0.74
VPS53-215ENST00000573028 HSD3B7Q9H2F3 369 aa19.69■□□□□ 0.74
VPS53-215ENST00000573028 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.69■□□□□ 0.744e-6■■■□□ 17.1
VPS53-215ENST00000573028 SNAP23O00161 211 aa19.68■□□□□ 0.74
VPS53-215ENST00000573028 SH2B2O14492 632 aaPredicted RBP19.68■□□□□ 0.74
VPS53-215ENST00000573028 CDK11BP21127 795 aaKnown RBP19.68■□□□□ 0.74
VPS53-215ENST00000573028 CCDC102BQ68D86 513 aa19.68■□□□□ 0.74
VPS53-215ENST00000573028 KCNH3Q9ULD8 1083 aa19.68■□□□□ 0.74
VPS53-215ENST00000573028 KCNJ14Q9UNX9 436 aa19.68■□□□□ 0.74
VPS53-215ENST00000573028 ERICH4A6NGS2 130 aa19.68■□□□□ 0.74
VPS53-215ENST00000573028 IFIT3O14879 490 aaKnown RBP19.68■□□□□ 0.74
VPS53-215ENST00000573028 PHKA1P46020 1223 aa19.68■□□□□ 0.74
VPS53-215ENST00000573028 ETF1P62495 437 aaKnown RBP19.68■□□□□ 0.74
VPS53-215ENST00000573028 ABCC6O95255 1503 aa19.68■□□□□ 0.74
VPS53-215ENST00000573028 METTL16Q86W50 562 aaKnown RBP19.68■□□□□ 0.74
VPS53-215ENST00000573028 FOXP4Q8IVH2 680 aaPredicted RBP19.68■□□□□ 0.74
VPS53-215ENST00000573028 ZNF446Q9NWS9 450 aa19.68■□□□□ 0.74
VPS53-215ENST00000573028 TMEM94Q12767 1356 aa19.68■□□□□ 0.74
VPS53-215ENST00000573028 IKBKBO14920 756 aa19.67■□□□□ 0.74
VPS53-215ENST00000573028 HLFQ16534 295 aa19.67■□□□□ 0.74
VPS53-215ENST00000573028 TRMT44Q8IYL2 757 aaKnown RBP19.67■□□□□ 0.74
VPS53-215ENST00000573028 KAT6BQ8WYB5 2073 aa19.67■□□□□ 0.74
VPS53-215ENST00000573028 BTBD18B2RXH4 712 aa19.67■□□□□ 0.74
VPS53-215ENST00000573028 ERVV-2B6SEH9 535 aa19.67■□□□□ 0.74
VPS53-215ENST00000573028 RANBP6O60518 1105 aaKnown RBP19.67■□□□□ 0.74
VPS53-215ENST00000573028 PTPAQ15257 358 aa19.67■□□□□ 0.74
VPS53-215ENST00000573028 UBXN4Q92575 508 aa19.67■□□□□ 0.74
VPS53-215ENST00000573028 ASAP1Q9ULH1 1129 aa19.67■□□□□ 0.74
VPS53-215ENST00000573028 TBC1D2BQ9UPU7 963 aa19.67■□□□□ 0.74
VPS53-215ENST00000573028 SLC12A7Q9Y666 1083 aa19.67■□□□□ 0.74
VPS53-215ENST00000573028 CBFA2T2O43439 604 aa19.66■□□□□ 0.74
VPS53-215ENST00000573028 PDE4BQ07343 736 aa19.66■□□□□ 0.74
VPS53-215ENST00000573028 TMOD3Q9NYL9 352 aa19.66■□□□□ 0.74
VPS53-215ENST00000573028 CPDO75976 1380 aa19.66■□□□□ 0.74
VPS53-215ENST00000573028 PCCAP05165 728 aaPredicted RBP19.66■□□□□ 0.74
VPS53-215ENST00000573028 GABPB1Q06547 395 aaPredicted RBP19.66■□□□□ 0.74
VPS53-215ENST00000573028 GRAMD1CQ8IYS0 662 aa19.66■□□□□ 0.74
VPS53-215ENST00000573028 EPC1Q9H2F5 836 aa19.66■□□□□ 0.74
VPS53-215ENST00000573028 LMTK3Q96Q04 1460 aa19.66■□□□□ 0.74
VPS53-215ENST00000573028 SLFN14P0C7P3 912 aa19.66■□□□□ 0.74
VPS53-215ENST00000573028 PDE6AP16499 860 aa19.66■□□□□ 0.74
VPS53-215ENST00000573028 GRIN1Q05586 938 aa19.66■□□□□ 0.74
VPS53-215ENST00000573028 L2HGDHQ9H9P8 463 aa19.66■□□□□ 0.74
VPS53-215ENST00000573028 TUBE1Q9UJT0 475 aa19.66■□□□□ 0.74
VPS53-215ENST00000573028 GUCY1A2P33402 732 aa19.65■□□□□ 0.74
VPS53-215ENST00000573028 KRBA2Q6ZNG9 492 aa19.65■□□□□ 0.74
VPS53-215ENST00000573028 TICAM2Q86XR7 235 aa19.65■□□□□ 0.74
VPS53-215ENST00000573028 ZBTB38Q8NAP3 1195 aaPredicted RBP19.65■□□□□ 0.74
VPS53-215ENST00000573028 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.65■□□□□ 0.74
VPS53-215ENST00000573028 CARD6Q9BX69 1037 aa19.65■□□□□ 0.74
VPS53-215ENST00000573028 NAPBQ9H115 298 aa19.65■□□□□ 0.74
VPS53-215ENST00000573028 RIPOR2Q9Y4F9 1068 aa19.65■□□□□ 0.74
VPS53-215ENST00000573028 ANKRD18BA2A2Z9 1011 aa19.65■□□□□ 0.74
VPS53-215ENST00000573028 CLCN6P51797 869 aa19.65■□□□□ 0.74
VPS53-215ENST00000573028 HPSEQ9Y251 543 aa19.65■□□□□ 0.74
VPS53-215ENST00000573028 UBN2Q6ZU65 1347 aa19.65■□□□□ 0.74
VPS53-215ENST00000573028 ADKP55263 362 aaKnown RBP19.64■□□□□ 0.74
VPS53-215ENST00000573028 SSRP1Q08945 709 aaKnown RBP19.64■□□□□ 0.74
VPS53-215ENST00000573028 TIGD1Q96MW7 591 aa19.64■□□□□ 0.74
VPS53-215ENST00000573028 TRMT112Q9UI30 125 aaKnown RBP19.64■□□□□ 0.74
VPS53-215ENST00000573028 NWD2Q9ULI1 1742 aa19.64■□□□□ 0.74
VPS53-215ENST00000573028 PPP6R2O75170 966 aa19.64■□□□□ 0.73
VPS53-215ENST00000573028 TERF2Q15554 542 aa19.64■□□□□ 0.73
VPS53-215ENST00000573028 RESP18Q5W5W9 173 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 119.1 ms