RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 ABCF2Q9UG63 623 aa12.63□□□□□ -0.39
CDH3-210ENST00000569117 ZNF541Q9H0D2 1346 aa12.62□□□□□ -0.39
CDH3-210ENST00000569117 PSMD14O00487 310 aa12.62□□□□□ -0.39
CDH3-210ENST00000569117 DPYSL4O14531 572 aa12.62□□□□□ -0.39
CDH3-210ENST00000569117 IDH1O75874 414 aaKnown RBP12.62□□□□□ -0.39
CDH3-210ENST00000569117 RAD17O75943 681 aa12.62□□□□□ -0.39
CDH3-210ENST00000569117 LDHBP07195 334 aaKnown RBP12.62□□□□□ -0.39
CDH3-210ENST00000569117 ZFYP08048 801 aaPredicted RBP12.62□□□□□ -0.39
CDH3-210ENST00000569117 EIF6P56537 245 aaKnown RBP12.62□□□□□ -0.39
CDH3-210ENST00000569117 CXCL9Q07325 125 aa12.62□□□□□ -0.39
CDH3-210ENST00000569117 LRRFIP1Q32MZ4 808 aaKnown RBP12.62□□□□□ -0.39
CDH3-210ENST00000569117 C9orf131Q5VYM1 1079 aa12.62□□□□□ -0.39
CDH3-210ENST00000569117 CIAPIN1Q6FI81 312 aa12.62□□□□□ -0.39
CDH3-210ENST00000569117 ZSCAN25Q6NSZ9 544 aa12.62□□□□□ -0.39
CDH3-210ENST00000569117 RSBN1LQ6PCB5 846 aaPredicted RBP12.62□□□□□ -0.39
CDH3-210ENST00000569117 LRP2BPQ9P2M1 347 aa12.62□□□□□ -0.39
CDH3-210ENST00000569117 MAST3O60307 1309 aa12.62□□□□□ -0.39
CDH3-210ENST00000569117 CDK5RAP2Q96SN8 1893 aa12.61□□□□□ -0.39
CDH3-210ENST00000569117 FOCADQ5VW36 1801 aa12.61□□□□□ -0.39
CDH3-210ENST00000569117 SPDYE16A6NNV3 312 aaPredicted RBP12.61□□□□□ -0.39
CDH3-210ENST00000569117 HIP1O00291 1037 aa12.61□□□□□ -0.39
CDH3-210ENST00000569117 CDC45O75419 566 aa12.61□□□□□ -0.39
CDH3-210ENST00000569117 PDE6AP16499 860 aa12.61□□□□□ -0.39
CDH3-210ENST00000569117 ADD2P35612 726 aa12.61□□□□□ -0.39
CDH3-210ENST00000569117 TNIP1Q15025 636 aa12.61□□□□□ -0.39
CDH3-210ENST00000569117 GRIK5Q16478 980 aa12.61□□□□□ -0.39
CDH3-210ENST00000569117 DZIP1Q86YF9 867 aaKnown RBP12.61□□□□□ -0.39
CDH3-210ENST00000569117 ZNF384Q8TF68 577 aa12.61□□□□□ -0.39
CDH3-210ENST00000569117 GMLQ99445 158 aa12.61□□□□□ -0.39
CDH3-210ENST00000569117 RAI14Q9P0K7 980 aa12.61□□□□□ -0.39
CDH3-210ENST00000569117 TCRBV5S4A2TA0A5A2 114 aa12.6□□□□□ -0.39
CDH3-210ENST00000569117 RNF113AO15541 343 aaKnown RBP12.6□□□□□ -0.39
CDH3-210ENST00000569117 RPS12P25398 132 aaKnown RBP12.6□□□□□ -0.39
CDH3-210ENST00000569117 MECOMQ03112 1051 aa12.6□□□□□ -0.39
CDH3-210ENST00000569117 UBE3CQ15386 1083 aa12.6□□□□□ -0.39
CDH3-210ENST00000569117 SLC9C2Q5TAH2 1124 aa12.6□□□□□ -0.39
CDH3-210ENST00000569117 GPC2Q8N158 579 aa12.6□□□□□ -0.39
CDH3-210ENST00000569117 AGBL3Q8NEM8 1001 aa12.6□□□□□ -0.39
CDH3-210ENST00000569117 NSUN4Q96CB9 384 aaKnown RBP12.6□□□□□ -0.39
CDH3-210ENST00000569117 MXD3Q9BW11 206 aa12.6□□□□□ -0.39
CDH3-210ENST00000569117 GAKO14976 1311 aa12.6□□□□□ -0.39
CDH3-210ENST00000569117 RAD50Q92878 1312 aa12.6□□□□□ -0.39
CDH3-210ENST00000569117 DDX60LQ5H9U9 1706 aaKnown RBP12.59□□□□□ -0.39
CDH3-210ENST00000569117 WDR90Q96KV7 1748 aa12.59□□□□□ -0.39
CDH3-210ENST00000569117 CHMLP26374 656 aa12.59□□□□□ -0.39
CDH3-210ENST00000569117 GSTO1P78417 241 aa12.59□□□□□ -0.39
CDH3-210ENST00000569117 ZMYM1Q5SVZ6 1142 aa12.59□□□□□ -0.39
CDH3-210ENST00000569117 NAA16Q6N069 864 aaPredicted RBP12.59□□□□□ -0.39
CDH3-210ENST00000569117 MAGEB6Q8N7X4 407 aa12.59□□□□□ -0.39
CDH3-210ENST00000569117 APPBP2Q92624 585 aa12.59□□□□□ -0.39
CDH3-210ENST00000569117 PHF12Q96QT6 1004 aa12.59□□□□□ -0.39
CDH3-210ENST00000569117 DIAPH3Q9NSV4 1193 aa12.59□□□□□ -0.39
CDH3-210ENST00000569117 EMILIN3Q9NT22 766 aa12.59□□□□□ -0.39
CDH3-210ENST00000569117 SCN4AP35499 1836 aa12.59□□□□□ -0.39
CDH3-210ENST00000569117 MROH7-TTC4A0A0A0MT08 1334 aa12.59□□□□□ -0.39
CDH3-210ENST00000569117 ZNF532Q9HCE3 1301 aa12.59□□□□□ -0.39
CDH3-210ENST00000569117 CHGBP05060 677 aa12.58□□□□□ -0.4
CDH3-210ENST00000569117 HDLBPQ00341 1268 aaKnown RBP12.58□□□□□ -0.4
CDH3-210ENST00000569117 NMIQ13287 307 aaPredicted RBP12.58□□□□□ -0.4
CDH3-210ENST00000569117 CASC1Q6TDU7 716 aa12.58□□□□□ -0.4
CDH3-210ENST00000569117 KIAA0825Q8IV33 1275 aa12.58□□□□□ -0.4
CDH3-210ENST00000569117 SLF2Q8IX21 1173 aa12.58□□□□□ -0.4
CDH3-210ENST00000569117 NAV1Q8NEY1 1877 aa12.58□□□□□ -0.4
CDH3-210ENST00000569117 TTF2Q9UNY4 1162 aaKnown RBP12.58□□□□□ -0.4
CDH3-210ENST00000569117 A0A0D9SFI3 127 aa12.57□□□□□ -0.4
CDH3-210ENST00000569117 CYP7A1P22680 504 aa12.57□□□□□ -0.4
CDH3-210ENST00000569117 GMPSP49915 693 aaPredicted RBP12.57□□□□□ -0.4
CDH3-210ENST00000569117 MMP14P50281 582 aa12.57□□□□□ -0.4
CDH3-210ENST00000569117 DIXDC1Q155Q3 683 aa12.57□□□□□ -0.4
CDH3-210ENST00000569117 C8orf34Q49A92 452 aa12.57□□□□□ -0.4
CDH3-210ENST00000569117 ADGRA1Q86SQ6 560 aa12.57□□□□□ -0.4
CDH3-210ENST00000569117 DPF2Q92785 391 aa12.57□□□□□ -0.4
CDH3-210ENST00000569117 FAM163AQ96GL9 167 aaPredicted RBP12.57□□□□□ -0.4
CDH3-210ENST00000569117 FAM227BQ96M60 508 aa12.57□□□□□ -0.4
CDH3-210ENST00000569117 MRIQ9BWK5 157 aa12.57□□□□□ -0.4
CDH3-210ENST00000569117 HELLSQ9NRZ9 838 aa12.57□□□□□ -0.4
CDH3-210ENST00000569117 SERPINA10Q9UK55 444 aa12.57□□□□□ -0.4
CDH3-210ENST00000569117 DAGLAQ9Y4D2 1042 aa12.57□□□□□ -0.4
CDH3-210ENST00000569117 GJA3Q9Y6H8 435 aa12.57□□□□□ -0.4
CDH3-210ENST00000569117 LAMA4Q16363 1823 aa12.57□□□□□ -0.4
CDH3-210ENST00000569117 LAMB1P07942 1786 aa12.56□□□□□ -0.4
CDH3-210ENST00000569117 F8W031 263 aaPredicted RBP12.56□□□□□ -0.4
CDH3-210ENST00000569117 LDHCP07864 332 aa12.56□□□□□ -0.4
CDH3-210ENST00000569117 USP17L8P0C7I0 530 aa12.56□□□□□ -0.4
CDH3-210ENST00000569117 ZNF280AP59817 542 aaPredicted RBP12.56□□□□□ -0.4
CDH3-210ENST00000569117 SLFNL1Q499Z3 407 aa12.56□□□□□ -0.4
CDH3-210ENST00000569117 HHIPL2Q6UWX4 724 aa12.56□□□□□ -0.4
CDH3-210ENST00000569117 CWC27Q6UX04 472 aaKnown RBP12.56□□□□□ -0.4
CDH3-210ENST00000569117 RUFY2Q8WXA3 655 aa12.56□□□□□ -0.4
CDH3-210ENST00000569117 OSBP2Q969R2 916 aa12.56□□□□□ -0.4
CDH3-210ENST00000569117 TEKT1Q969V4 418 aa12.56□□□□□ -0.4
CDH3-210ENST00000569117 ZDHHC15Q96MV8 337 aa12.56□□□□□ -0.4
CDH3-210ENST00000569117 FAM117AQ9C073 453 aa12.56□□□□□ -0.4
CDH3-210ENST00000569117 HDAC9Q9UKV0 1011 aa12.56□□□□□ -0.4
CDH3-210ENST00000569117 SGSM2O43147 1006 aa12.55□□□□□ -0.4
CDH3-210ENST00000569117 CRKP46108 304 aa12.55□□□□□ -0.4
CDH3-210ENST00000569117 SCNN1DP51172 638 aa12.55□□□□□ -0.4
CDH3-210ENST00000569117 CERS3Q8IU89 383 aa12.55□□□□□ -0.4
CDH3-210ENST00000569117 OGFOD1Q8N543 542 aa12.55□□□□□ -0.4
CDH3-210ENST00000569117 L3MBTL3Q96JM7 780 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms