RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 MYO5AQ9Y4I1 1855 aaKnown RBP22.66■■□□□ 1.22
CLN3-237ENST00000569030 ARID4AP29374 1257 aaPredicted RBP22.65■■□□□ 1.22
CLN3-237ENST00000569030 TM4SF4P48230 202 aa22.65■■□□□ 1.22
CLN3-237ENST00000569030 SPATA5Q8NB90 893 aa22.65■■□□□ 1.22
CLN3-237ENST00000569030 DBNDD2Q9BQY9 259 aa22.65■■□□□ 1.22
CLN3-237ENST00000569030 UNCXA6NJT0 531 aa22.64■■□□□ 1.21
CLN3-237ENST00000569030 MCAMP43121 646 aa22.64■■□□□ 1.21
CLN3-237ENST00000569030 TBC1D9Q6ZT07 1266 aa22.64■■□□□ 1.21
CLN3-237ENST00000569030 ZNF384Q8TF68 577 aa22.64■■□□□ 1.21
CLN3-237ENST00000569030 NFIAQ12857 509 aa22.63■■□□□ 1.21
CLN3-237ENST00000569030 C20orf194Q5TEA3 1177 aa22.63■■□□□ 1.21
CLN3-237ENST00000569030 ANKRD13AQ8IZ07 590 aa22.63■■□□□ 1.21
CLN3-237ENST00000569030 WNK4Q96J92 1243 aa22.63■■□□□ 1.21
CLN3-237ENST00000569030 ZBTB40Q9NUA8 1239 aa22.63■■□□□ 1.21
CLN3-237ENST00000569030 USP40Q9NVE5 1235 aa22.63■■□□□ 1.21
CLN3-237ENST00000569030 DDX19BQ9UMR2 479 aa22.63■■□□□ 1.21
CLN3-237ENST00000569030 GAKO14976 1311 aa22.62■■□□□ 1.21
CLN3-237ENST00000569030 CAPN15O75808 1086 aa22.62■■□□□ 1.21
CLN3-237ENST00000569030 GJA5P36382 358 aa22.62■■□□□ 1.21
CLN3-237ENST00000569030 TCP10Q12799 353 aa22.62■■□□□ 1.21
CLN3-237ENST00000569030 SPTY2D1Q68D10 685 aaPredicted RBP22.62■■□□□ 1.21
CLN3-237ENST00000569030 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.62■■□□□ 1.21
CLN3-237ENST00000569030 DZIP1Q86YF9 867 aaKnown RBP22.62■■□□□ 1.21
CLN3-237ENST00000569030 EXOC6BQ9Y2D4 811 aa22.62■■□□□ 1.21
CLN3-237ENST00000569030 UQCRFS1P1P0C7P4 283 aa22.61■■□□□ 1.21
CLN3-237ENST00000569030 MECOMQ03112 1051 aa22.61■■□□□ 1.21
CLN3-237ENST00000569030 ERICH6Q7L0X2 663 aa22.61■■□□□ 1.21
CLN3-237ENST00000569030 FAM151AQ8WW52 585 aa22.61■■□□□ 1.21
CLN3-237ENST00000569030 FAM163AQ96GL9 167 aaPredicted RBP22.61■■□□□ 1.21
CLN3-237ENST00000569030 FAM198AQ9UFP1 575 aa22.61■■□□□ 1.21
CLN3-237ENST00000569030 ZBTB48P10074 688 aaPredicted RBP22.6■■□□□ 1.21
CLN3-237ENST00000569030 MAP3K9P80192 1104 aa22.6■■□□□ 1.21
CLN3-237ENST00000569030 ZFPM1Q8IX07 1006 aa22.6■■□□□ 1.21
CLN3-237ENST00000569030 SIRT2Q8IXJ6 389 aa22.6■■□□□ 1.21
CLN3-237ENST00000569030 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.6■■□□□ 1.21
CLN3-237ENST00000569030 EAF2Q96CJ1 260 aaPredicted RBP22.6■■□□□ 1.21
CLN3-237ENST00000569030 CCDC8Q9H0W5 538 aaPredicted RBP22.6■■□□□ 1.21
CLN3-237ENST00000569030 ELP3Q9H9T3 547 aa22.6■■□□□ 1.21
CLN3-237ENST00000569030 SNRKQ9NRH2 765 aa22.6■■□□□ 1.21
CLN3-237ENST00000569030 TLR7Q9NYK1 1049 aaKnown RBP22.6■■□□□ 1.21
CLN3-237ENST00000569030 TBC1D8O95759 1140 aa22.59■■□□□ 1.21
CLN3-237ENST00000569030 SREBF2Q12772 1141 aa22.59■■□□□ 1.21
CLN3-237ENST00000569030 VGLL4Q14135 290 aa22.59■■□□□ 1.21
CLN3-237ENST00000569030 CCDC158Q5M9N0 1113 aa22.59■■□□□ 1.21
CLN3-237ENST00000569030 TTC39AQ5SRH9 613 aa22.59■■□□□ 1.21
CLN3-237ENST00000569030 CNKSR2Q8WXI2 1034 aa22.59■■□□□ 1.21
CLN3-237ENST00000569030 DBNLQ9UJU6 430 aaKnown RBP22.59■■□□□ 1.21
CLN3-237ENST00000569030 RPAP1Q9BWH6 1393 aaPredicted RBP22.59■■□□□ 1.21
CLN3-237ENST00000569030 PDE3AQ14432 1141 aa22.58■■□□□ 1.21
CLN3-237ENST00000569030 MIGA2Q7L4E1 593 aa22.58■■□□□ 1.21
CLN3-237ENST00000569030 SLF2Q8IX21 1173 aa22.58■■□□□ 1.21
CLN3-237ENST00000569030 RPAP2Q8IXW5 612 aaPredicted RBP22.58■■□□□ 1.21
CLN3-237ENST00000569030 NSUN4Q96CB9 384 aaKnown RBP22.58■■□□□ 1.21
CLN3-237ENST00000569030 MROH7-TTC4A0A0A0MT08 1334 aa22.57■■□□□ 1.2
CLN3-237ENST00000569030 DOCK2Q92608 1830 aa22.57■■□□□ 1.2
CLN3-237ENST00000569030 MANSC4A6NHS7 340 aaPredicted RBP22.57■■□□□ 1.2
CLN3-237ENST00000569030 BTDP43251 543 aa22.57■■□□□ 1.2
CLN3-237ENST00000569030 OPTNQ96CV9 577 aa22.57■■□□□ 1.2
CLN3-237ENST00000569030 GPR75-ASB3A0A0A6YYF3 556 aa22.56■■□□□ 1.2
CLN3-237ENST00000569030 RGS3P49796 1198 aa22.56■■□□□ 1.2
CLN3-237ENST00000569030 ZKSCAN4Q969J2 545 aaPredicted RBP22.56■■□□□ 1.2
CLN3-237ENST00000569030 HOOK2Q96ED9 719 aa22.56■■□□□ 1.2
CLN3-237ENST00000569030 ZNF512BQ96KM6 892 aaPredicted RBP22.56■■□□□ 1.2
CLN3-237ENST00000569030 IDI2Q9BXS1 227 aa22.56■■□□□ 1.2
CLN3-237ENST00000569030 R3HDMLQ9H3Y0 253 aa22.56■■□□□ 1.2
CLN3-237ENST00000569030 RAI14Q9P0K7 980 aa22.56■■□□□ 1.2
CLN3-237ENST00000569030 RFX7Q2KHR2 1363 aa22.55■■□□□ 1.2
CLN3-237ENST00000569030 WDHD1O75717 1129 aaPredicted RBP22.55■■□□□ 1.2
CLN3-237ENST00000569030 CYP2E1P05181 493 aaPredicted RBP22.55■■□□□ 1.2
CLN3-237ENST00000569030 INHBEP58166 350 aa22.55■■□□□ 1.2
CLN3-237ENST00000569030 IFNL1Q8IU54 200 aa22.55■■□□□ 1.2
CLN3-237ENST00000569030 ERC1Q8IUD2 1116 aa22.55■■□□□ 1.2
CLN3-237ENST00000569030 WRNIP1Q96S55 665 aa22.55■■□□□ 1.2
CLN3-237ENST00000569030 LRP2BPQ9P2M1 347 aa22.55■■□□□ 1.2
CLN3-237ENST00000569030 CSADQ9Y600 493 aa22.55■■□□□ 1.2
CLN3-237ENST00000569030 CDK5RAP2Q96SN8 1893 aa22.54■■□□□ 1.2
CLN3-237ENST00000569030 IGF2BP3O00425 579 aaKnown RBP eCLIP22.54■■□□□ 1.2
CLN3-237ENST00000569030 RHBDL3P58872 404 aa22.54■■□□□ 1.2
CLN3-237ENST00000569030 DCAF15Q66K64 600 aa22.54■■□□□ 1.2
CLN3-237ENST00000569030 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.54■■□□□ 1.2
CLN3-237ENST00000569030 ABHD8Q96I13 439 aa22.54■■□□□ 1.2
CLN3-237ENST00000569030 IL1RAPL2Q9NP60 686 aa22.54■■□□□ 1.2
CLN3-237ENST00000569030 DDX4Q9NQI0 724 aaKnown RBP22.54■■□□□ 1.2
CLN3-237ENST00000569030 SNCAIPQ9Y6H5 919 aa22.54■■□□□ 1.2
CLN3-237ENST00000569030 MAST2Q6P0Q8 1798 aa22.53■■□□□ 1.2
CLN3-237ENST00000569030 ENTPD3O75355 529 aa22.53■■□□□ 1.2
CLN3-237ENST00000569030 LDHCP07864 332 aa22.53■■□□□ 1.2
CLN3-237ENST00000569030 ZAP70P43403 619 aa22.53■■□□□ 1.2
CLN3-237ENST00000569030 GSTO1P78417 241 aa22.53■■□□□ 1.2
CLN3-237ENST00000569030 SH3BP5LQ7L8J4 393 aa22.53■■□□□ 1.2
CLN3-237ENST00000569030 AACSQ86V21 672 aa22.53■■□□□ 1.2
CLN3-237ENST00000569030 RHPN1Q8TCX5 695 aa22.53■■□□□ 1.2
CLN3-237ENST00000569030 MS4A4AQ96JQ5 239 aa22.53■■□□□ 1.2
CLN3-237ENST00000569030 PTPN18Q99952 460 aa22.53■■□□□ 1.2
CLN3-237ENST00000569030 ZNF341Q9BYN7 854 aa22.53■■□□□ 1.2
CLN3-237ENST00000569030 MCOLN1Q9GZU1 580 aa22.53■■□□□ 1.2
CLN3-237ENST00000569030 CHMP4BQ9H444 224 aaKnown RBP22.53■■□□□ 1.2
CLN3-237ENST00000569030 APBB1O00213 710 aa22.52■■□□□ 1.2
CLN3-237ENST00000569030 HMMRO75330 724 aa22.52■■□□□ 1.2
CLN3-237ENST00000569030 INPP5BP32019 993 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms