RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 RASSF8Q8NHQ8 419 aa16.64■□□□□ 0.25
VPS35-210ENST00000568784 OSBPL5Q9H0X9 879 aaPredicted RBP16.64■□□□□ 0.25
VPS35-210ENST00000568784 POLR3EQ9NVU0 708 aa16.64■□□□□ 0.25
VPS35-210ENST00000568784 MROH7-TTC4A0A0A0MT08 1334 aa16.64■□□□□ 0.25
VPS35-210ENST00000568784 TDO2P48775 406 aa16.64■□□□□ 0.25
VPS35-210ENST00000568784 LONRF3Q496Y0 759 aa16.64■□□□□ 0.25
VPS35-210ENST00000568784 APPBP2Q92624 585 aa16.64■□□□□ 0.25
VPS35-210ENST00000568784 STAMQ92783 540 aa16.64■□□□□ 0.25
VPS35-210ENST00000568784 ANGEL1Q9UNK9 670 aaKnown RBP16.64■□□□□ 0.25
VPS35-210ENST00000568784 PPFIBP1Q86W92 1011 aa16.63■□□□□ 0.25
VPS35-210ENST00000568784 SENP2Q9HC62 589 aa16.63■□□□□ 0.25
VPS35-210ENST00000568784 MTMR7Q9Y216 660 aa16.63■□□□□ 0.25
VPS35-210ENST00000568784 ERICH2A1L162 156 aa16.63■□□□□ 0.25
VPS35-210ENST00000568784 CTDSPL2Q05D32 466 aa16.63■□□□□ 0.25
VPS35-210ENST00000568784 PRDM11Q9NQV5 511 aa16.63■□□□□ 0.25
VPS35-210ENST00000568784 RGPD1P0DJD0 1748 aa16.63■□□□□ 0.25
VPS35-210ENST00000568784 BTBD18B2RXH4 712 aa16.63■□□□□ 0.25
VPS35-210ENST00000568784 NBPF26B4DH59 902 aa16.63■□□□□ 0.25
VPS35-210ENST00000568784 PNMA6AP0CW24 399 aaPredicted RBP16.63■□□□□ 0.25
VPS35-210ENST00000568784 FOXO4P98177 505 aa16.63■□□□□ 0.25
VPS35-210ENST00000568784 SSRP1Q08945 709 aaKnown RBP16.63■□□□□ 0.25
VPS35-210ENST00000568784 NBPF14Q5TI25 921 aa16.63■□□□□ 0.25
VPS35-210ENST00000568784 NBPF10Q6P3W6 841 aaKnown RBP16.63■□□□□ 0.25
VPS35-210ENST00000568784 TRIM22Q8IYM9 498 aa16.63■□□□□ 0.25
VPS35-210ENST00000568784 NBPF15Q8N660 670 aa16.63■□□□□ 0.25
VPS35-210ENST00000568784 MINDY4BA8MYZ0 360 aa16.62■□□□□ 0.25
VPS35-210ENST00000568784 KLHL34Q8N239 644 aa16.62■□□□□ 0.25
VPS35-210ENST00000568784 SMARCE1Q969G3 411 aa16.62■□□□□ 0.25
VPS35-210ENST00000568784 PIK3C2AO00443 1686 aa16.62■□□□□ 0.25
VPS35-210ENST00000568784 SLC39A14Q15043 492 aa16.62■□□□□ 0.25
VPS35-210ENST00000568784 PSDA5PKW4 1024 aaPredicted RBP16.62■□□□□ 0.25
VPS35-210ENST00000568784 LMAN1P49257 510 aa16.62■□□□□ 0.25
VPS35-210ENST00000568784 GPS2Q13227 327 aa16.62■□□□□ 0.25
VPS35-210ENST00000568784 KIF4BQ2VIQ3 1234 aa16.62■□□□□ 0.25
VPS35-210ENST00000568784 RABL6Q3YEC7 729 aaPredicted RBP16.62■□□□□ 0.25
VPS35-210ENST00000568784 KIF6Q6ZMV9 814 aa16.62■□□□□ 0.25
VPS35-210ENST00000568784 DHX58Q96C10 678 aa16.62■□□□□ 0.25
VPS35-210ENST00000568784 PPP2R2CQ9Y2T4 447 aa16.62■□□□□ 0.25
VPS35-210ENST00000568784 SNAP23O00161 211 aa16.61■□□□□ 0.25
VPS35-210ENST00000568784 PPP2R3AQ06190 1150 aa16.61■□□□□ 0.25
VPS35-210ENST00000568784 IRX2Q9BZI1 471 aaPredicted RBP16.61■□□□□ 0.25
VPS35-210ENST00000568784 ZNF446Q9NWS9 450 aa16.61■□□□□ 0.25
VPS35-210ENST00000568784 PHACTR2O75167 634 aa16.61■□□□□ 0.25
VPS35-210ENST00000568784 ZFYP08048 801 aaPredicted RBP16.61■□□□□ 0.25
VPS35-210ENST00000568784 CALCOCO1Q9P1Z2 691 aa16.61■□□□□ 0.25
VPS35-210ENST00000568784 SERTAD1Q9UHV2 236 aa16.61■□□□□ 0.25
VPS35-210ENST00000568784 EVA1CP58658 441 aa16.61■□□□□ 0.25
VPS35-210ENST00000568784 SHC4Q6S5L8 630 aa16.61■□□□□ 0.25
VPS35-210ENST00000568784 ARFGAP3Q9NP61 516 aa16.61■□□□□ 0.25
VPS35-210ENST00000568784 ANKARQ7Z5J8 1434 aa16.6■□□□□ 0.25
VPS35-210ENST00000568784 ANTXR2P58335 489 aa16.6■□□□□ 0.25
VPS35-210ENST00000568784 CACNA1FO60840 1977 aa16.6■□□□□ 0.25
VPS35-210ENST00000568784 CDC27P30260 824 aa16.6■□□□□ 0.25
VPS35-210ENST00000568784 TAF3Q5VWG9 929 aa16.6■□□□□ 0.25
VPS35-210ENST00000568784 DIS3L2Q8IYB7 885 aaKnown RBP16.6■□□□□ 0.25
VPS35-210ENST00000568784 MIGA1Q8NAN2 632 aa16.6■□□□□ 0.25
VPS35-210ENST00000568784 CASP1P29466 404 aa16.6■□□□□ 0.25
VPS35-210ENST00000568784 NWD1Q149M9 1564 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 H7C1W4 665 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 RHOXF2BP0C7M4 288 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 OAS2P29728 719 aaKnown RBP16.59■□□□□ 0.25
VPS35-210ENST00000568784 AXDND1Q5T1B0 1012 aaPredicted RBP16.59■□□□□ 0.25
VPS35-210ENST00000568784 CYB5R4Q7L1T6 521 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 KRI1Q8N9T8 703 aaKnown RBP16.59■□□□□ 0.25
VPS35-210ENST00000568784 WDR24Q96S15 920 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 RHOXF2Q9BQY4 288 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 ABCF2Q9UG63 623 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 HPS5Q9UPZ3 1129 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 TBC1D10CQ8IV04 446 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 FMN2Q9NZ56 1722 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 NCAPHQ15003 741 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 APOA5Q6Q788 366 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 ADGRL3Q9HAR2 1447 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 CABP5Q9NP86 173 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 SAMSN1Q9NSI8 373 aaKnown RBP16.59■□□□□ 0.25
VPS35-210ENST00000568784 ZNF532Q9HCE3 1301 aa16.59■□□□□ 0.25
VPS35-210ENST00000568784 TPM1P09493 284 aa16.58■□□□□ 0.25
VPS35-210ENST00000568784 TOGARAM2Q6ZUX3 1019 aa16.58■□□□□ 0.25
VPS35-210ENST00000568784 MB21D2Q8IYB1 491 aaPredicted RBP16.58■□□□□ 0.25
VPS35-210ENST00000568784 CCDC102AQ96A19 550 aa16.58■□□□□ 0.25
VPS35-210ENST00000568784 TRMT112Q9UI30 125 aaKnown RBP16.58■□□□□ 0.25
VPS35-210ENST00000568784 ARHGAP6O43182 974 aa16.58■□□□□ 0.24
VPS35-210ENST00000568784 CCT6AP40227 531 aaKnown RBP16.58■□□□□ 0.24
VPS35-210ENST00000568784 NR5A1Q13285 461 aa16.58■□□□□ 0.24
VPS35-210ENST00000568784 SART3Q15020 963 aaKnown RBP16.58■□□□□ 0.24
VPS35-210ENST00000568784 KRBA2Q6ZNG9 492 aa16.58■□□□□ 0.24
VPS35-210ENST00000568784 SMYD4Q8IYR2 804 aaPredicted RBP16.58■□□□□ 0.24
VPS35-210ENST00000568784 CCDC191Q8NCU4 936 aa16.58■□□□□ 0.24
VPS35-210ENST00000568784 PDE4BQ07343 736 aa16.58■□□□□ 0.24
VPS35-210ENST00000568784 MTF1Q14872 753 aa16.58■□□□□ 0.24
VPS35-210ENST00000568784 SLC4A8Q2Y0W8 1093 aa16.58■□□□□ 0.24
VPS35-210ENST00000568784 ARMT1Q9H993 441 aa16.58■□□□□ 0.24
VPS35-210ENST00000568784 MBD4O95243 580 aa16.57■□□□□ 0.24
VPS35-210ENST00000568784 GRIN1Q05586 938 aa16.57■□□□□ 0.24
VPS35-210ENST00000568784 MAGEB6Q8N7X4 407 aa16.57■□□□□ 0.24
VPS35-210ENST00000568784 ITGA6P23229 1130 aa16.57■□□□□ 0.24
VPS35-210ENST00000568784 POSTNQ15063 836 aa16.57■□□□□ 0.24
VPS35-210ENST00000568784 ZNF569Q5MCW4 686 aa16.57■□□□□ 0.24
VPS35-210ENST00000568784 VSTM4Q8IW00 320 aa16.57■□□□□ 0.24
VPS35-210ENST00000568784 UBAC1Q9BSL1 405 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms