RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 SNX27Q96L92 541 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 NAP1L5Q96NT1 182 aaPredicted RBP3.94□□□□□ -1.78
VPS35-209ENST00000568642 CAMKK2Q96RR4 588 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 MKNK1Q9BUB5 465 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 SAP130Q9H0E3 1048 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 ZNF408Q9H9D4 720 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 ARNT2Q9HBZ2 717 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 CASS4Q9NQ75 786 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 LRRC4BQ9NT99 713 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 MAP3K20Q9NYL2 800 aaKnown RBP3.94□□□□□ -1.78
VPS35-209ENST00000568642 MSRB2Q9Y3D2 182 aa3.94□□□□□ -1.78
VPS35-209ENST00000568642 MLH3Q9UHC1 1453 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 UBR1Q8IWV7 1749 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 ADCY9O60503 1353 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 ESPNB1AK53 854 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 C6orf229H3BNL8 230 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 IFRD1O00458 451 aaPredicted RBP3.93□□□□□ -1.78
VPS35-209ENST00000568642 TSPAN6O43657 245 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 WDHD1O75717 1129 aaPredicted RBP3.93□□□□□ -1.78
VPS35-209ENST00000568642 KIF4AO95239 1232 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 ZBTB7AO95365 584 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 LDHAP00338 332 aaKnown RBP3.93□□□□□ -1.78
VPS35-209ENST00000568642 MPSTP25325 297 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 MZF1P28698 734 aaPredicted RBP3.93□□□□□ -1.78
VPS35-209ENST00000568642 ETFBP38117 255 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 HNRNPMP52272 730 aaKnown RBP eCLIP3.93□□□□□ -1.78
VPS35-209ENST00000568642 SEC13P55735 322 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 PLCB3Q01970 1234 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 MYBPC2Q14324 1141 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 BRDTQ58F21 947 aaPredicted RBP3.93□□□□□ -1.78
VPS35-209ENST00000568642 DALRD3Q5D0E6 543 aaKnown RBP3.93□□□□□ -1.78
VPS35-209ENST00000568642 CCSAPQ6IQ19 270 aaPredicted RBP3.93□□□□□ -1.78
VPS35-209ENST00000568642 LYPD8Q6UX82 237 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 CCAR1Q8IX12 1150 aaKnown RBP3.93□□□□□ -1.78
VPS35-209ENST00000568642 AMOTL1Q8IY63 956 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 AFAP1Q8N556 730 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 TPCN2Q8NHX9 752 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 GCC1Q96CN9 775 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 AGBL1Q96MI9 1066 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 CITED4Q96RK1 184 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 ARPC5LQ9BPX5 153 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 FANCLQ9NW38 375 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 MAP10Q9P2G4 905 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 VTI1BQ9UEU0 232 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 SFMBT1Q9UHJ3 866 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 FBXO9Q9UK97 447 aaPredicted RBP3.93□□□□□ -1.78
VPS35-209ENST00000568642 ASXL1Q8IXJ9 1541 aa3.93□□□□□ -1.78
VPS35-209ENST00000568642 CFAP65Q6ZU64 1925 aaKnown RBP3.93□□□□□ -1.78
VPS35-209ENST00000568642 DHX57Q6P158 1386 aaKnown RBP3.92□□□□□ -1.78
VPS35-209ENST00000568642 USP31Q70CQ4 1352 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 ESYT3A0FGR9 886 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 A6NJY4 79 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 KCNA6P17658 529 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 GNA15P30679 374 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 CTHP32929 405 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 PSMD2Q13200 908 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 GNL2Q13823 731 aaKnown RBP3.92□□□□□ -1.78
VPS35-209ENST00000568642 NAA30Q147X3 362 aaPredicted RBP3.92□□□□□ -1.78
VPS35-209ENST00000568642 SYCP2LQ5T4T6 812 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 CCDC102BQ68D86 513 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 LINC00114Q6XXX2 140 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 ERMP1Q7Z2K6 904 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 PCGF5Q86SE9 256 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 CCDC116Q8IYX3 515 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 SVIPQ8NHG7 77 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 SH3TC2Q8TF17 1288 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 CRELD1Q96HD1 420 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.92□□□□□ -1.78
VPS35-209ENST00000568642 RRAGCQ9HB90 399 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 POLMQ9NP87 494 aaPredicted RBP3.92□□□□□ -1.78
VPS35-209ENST00000568642 COPRSQ9NQ92 184 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 TMEM260Q9NX78 707 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 FKBPLQ9UIM3 349 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 COMMD10Q9Y6G5 202 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 AK5Q9Y6K8 562 aa3.92□□□□□ -1.78
VPS35-209ENST00000568642 MAP3K5Q99683 1374 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 CTTNBP2Q8WZ74 1663 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 CHD2O14647 1828 aaKnown RBP3.91□□□□□ -1.78
VPS35-209ENST00000568642 ZBTB39O15060 712 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 GRIN3BO60391 1043 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 MAPK8P45983 427 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 RELBQ01201 579 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 RAB33AQ14088 237 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 SIM2Q14190 667 aaPredicted RBP3.91□□□□□ -1.78
VPS35-209ENST00000568642 AGERQ15109 404 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 VPS72Q15906 364 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 DBN1Q16643 649 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 MAP7D1Q3KQU3 841 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 NKAPLQ5M9Q1 402 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 PPP1R26Q5T8A7 1209 aaPredicted RBP3.91□□□□□ -1.78
VPS35-209ENST00000568642 DESI1Q6ICB0 168 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.91□□□□□ -1.78
VPS35-209ENST00000568642 BRINP3Q76B58 766 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 KRT26Q7Z3Y9 468 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 SAMD3Q8N6K7 520 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 KRTAP4-11Q9BYQ6 195 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.91□□□□□ -1.78
VPS35-209ENST00000568642 SIRPGQ9P1W8 387 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 KLF15Q9UIH9 416 aa3.91□□□□□ -1.78
VPS35-209ENST00000568642 NOD1Q9Y239 953 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms