RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ARHGEF1Q92888 912 aaKnown RBP23.71■■□□□ 1.39
CLN3-230ENST00000568076 FAM84BQ96KN1 310 aaPredicted RBP23.71■■□□□ 1.39
CLN3-230ENST00000568076 ZNF396Q96N95 335 aaPredicted RBP23.71■■□□□ 1.39
CLN3-230ENST00000568076 TNMDQ9H2S6 317 aa23.71■■□□□ 1.39
CLN3-230ENST00000568076 ZSWIM5Q9P217 1185 aa23.71■■□□□ 1.39
CLN3-230ENST00000568076 ABCF2Q9UG63 623 aa23.71■■□□□ 1.39
CLN3-230ENST00000568076 KDM4AO75164 1064 aa23.71■■□□□ 1.39
CLN3-230ENST00000568076 CCDC192P0DO97 292 aa23.71■■□□□ 1.39
CLN3-230ENST00000568076 CDC27P30260 824 aa23.71■■□□□ 1.39
CLN3-230ENST00000568076 GNL3LQ9NVN8 582 aaKnown RBP23.71■■□□□ 1.39
CLN3-230ENST00000568076 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.71■■□□□ 1.39
CLN3-230ENST00000568076 USP25Q9UHP3 1055 aa23.71■■□□□ 1.39
CLN3-230ENST00000568076 RTCBQ9Y3I0 505 aaKnown RBP23.71■■□□□ 1.39
CLN3-230ENST00000568076 KLRK1P26718 216 aa23.7■■□□□ 1.38
CLN3-230ENST00000568076 TDO2P48775 406 aa23.7■■□□□ 1.38
CLN3-230ENST00000568076 SGMS1Q86VZ5 419 aa23.7■■□□□ 1.38
CLN3-230ENST00000568076 CKAP2LQ8IYA6 745 aa23.7■■□□□ 1.38
CLN3-230ENST00000568076 NLRP3Q96P20 1036 aa23.7■■□□□ 1.38
CLN3-230ENST00000568076 RPS8P62241 208 aaKnown RBP23.69■■□□□ 1.38
CLN3-230ENST00000568076 CAVIN4Q5BKX8 364 aa23.69■■□□□ 1.38
CLN3-230ENST00000568076 STAG1Q8WVM7 1258 aa23.69■■□□□ 1.38
CLN3-230ENST00000568076 NACAP1Q9BZK3 213 aa23.69■■□□□ 1.38
CLN3-230ENST00000568076 RAI14Q9P0K7 980 aa23.69■■□□□ 1.38
CLN3-230ENST00000568076 NOL7Q9UMY1 257 aaKnown RBP23.69■■□□□ 1.38
CLN3-230ENST00000568076 CHD4Q14839 1912 aa23.69■■□□□ 1.38
CLN3-230ENST00000568076 TYRO3Q06418 890 aa23.69■■□□□ 1.38
CLN3-230ENST00000568076 TMEM67Q5HYA8 995 aa23.69■■□□□ 1.38
CLN3-230ENST00000568076 MRVI1Q9Y6F6 885 aa23.69■■□□□ 1.38
CLN3-230ENST00000568076 LIFRP42702 1097 aa23.68■■□□□ 1.38
CLN3-230ENST00000568076 MFSD6Q6ZSS7 791 aa23.68■■□□□ 1.38
CLN3-230ENST00000568076 MICU3Q86XE3 530 aa23.68■■□□□ 1.38
CLN3-230ENST00000568076 CNNM2Q9H8M5 875 aa23.68■■□□□ 1.38
CLN3-230ENST00000568076 FAM217BQ9NTX9 383 aaPredicted RBP23.68■■□□□ 1.38
CLN3-230ENST00000568076 CACNA1SQ13698 1873 aa23.68■■□□□ 1.38
CLN3-230ENST00000568076 TAF1LQ8IZX4 1826 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 FBXO33Q7Z6M2 555 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 GJD4Q96KN9 370 aaPredicted RBP23.67■■□□□ 1.38
CLN3-230ENST00000568076 MYL10Q9BUA6 226 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 GOLPH3LQ9H4A5 285 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 LY75O60449 1722 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 KIF28PB7ZC32 967 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 ZBTB43O43298 467 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 TM4SF1P30408 202 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 NTRK3Q16288 839 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 TPTE2Q6XPS3 522 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 VPS37DQ86XT2 251 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 CCDC144CPQ8IYA2 1237 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 ZNF384Q8TF68 577 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 SDR42E1Q8WUS8 393 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 AIFM3Q96NN9 605 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 RIOK1Q9BRS2 568 aaKnown RBP23.67■■□□□ 1.38
CLN3-230ENST00000568076 KRT23Q9C075 422 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 RTEL1Q9NZ71 1219 aa23.67■■□□□ 1.38
CLN3-230ENST00000568076 IFIT3O14879 490 aaKnown RBP23.66■■□□□ 1.38
CLN3-230ENST00000568076 NFXL1Q6ZNB6 911 aa23.66■■□□□ 1.38
CLN3-230ENST00000568076 CCAR1Q8IX12 1150 aaKnown RBP23.66■■□□□ 1.38
CLN3-230ENST00000568076 MAGEB6P1A0A0J9YX57 407 aa23.65■■□□□ 1.38
CLN3-230ENST00000568076 POLR3DP05423 398 aaPredicted RBP23.65■■□□□ 1.38
CLN3-230ENST00000568076 PHKBQ93100 1093 aa23.65■■□□□ 1.38
CLN3-230ENST00000568076 CCDC39Q9UFE4 941 aa23.65■■□□□ 1.38
CLN3-230ENST00000568076 AP5Z1O43299 807 aa23.65■■□□□ 1.38
CLN3-230ENST00000568076 ADCY5O95622 1261 aa23.65■■□□□ 1.38
CLN3-230ENST00000568076 KIF23Q02241 960 aaPredicted RBP23.65■■□□□ 1.38
CLN3-230ENST00000568076 RRP12Q5JTH9 1297 aaKnown RBP23.65■■□□□ 1.38
CLN3-230ENST00000568076 GOLGA8AA7E2F4 631 aa23.64■■□□□ 1.38
CLN3-230ENST00000568076 RANBP6O60518 1105 aaKnown RBP23.64■■□□□ 1.38
CLN3-230ENST00000568076 MSNP26038 577 aaKnown RBP23.64■■□□□ 1.38
CLN3-230ENST00000568076 PPARAQ07869 468 aa23.64■■□□□ 1.38
CLN3-230ENST00000568076 SNW1Q13573 536 aaKnown RBP23.64■■□□□ 1.38
CLN3-230ENST00000568076 STK11IPQ8N1F8 1099 aa23.64■■□□□ 1.38
CLN3-230ENST00000568076 ALG1Q9BT22 464 aa23.64■■□□□ 1.38
CLN3-230ENST00000568076 CLIC4Q9Y696 253 aa23.64■■□□□ 1.38
CLN3-230ENST00000568076 SMIM22K7EJ46 135 aa23.63■■□□□ 1.37
CLN3-230ENST00000568076 CDKL5O76039 1030 aa23.63■■□□□ 1.37
CLN3-230ENST00000568076 MYSM1Q5VVJ2 828 aa23.63■■□□□ 1.37
CLN3-230ENST00000568076 BRAPQ7Z569 592 aa23.63■■□□□ 1.37
CLN3-230ENST00000568076 LINC00301Q8NCQ3 95 aa23.63■■□□□ 1.37
CLN3-230ENST00000568076 RGS22Q8NE09 1264 aa23.63■■□□□ 1.37
CLN3-230ENST00000568076 FAM200AQ8TCP9 573 aa23.63■■□□□ 1.37
CLN3-230ENST00000568076 ZKSCAN3Q9BRR0 538 aa23.63■■□□□ 1.37
CLN3-230ENST00000568076 SBF2Q86WG5 1849 aa23.63■■□□□ 1.37
CLN3-230ENST00000568076 TNRC6CQ9HCJ0 1690 aaKnown RBP23.63■■□□□ 1.37
CLN3-230ENST00000568076 ME1P48163 572 aa23.63■■□□□ 1.37
CLN3-230ENST00000568076 DYNLL1P63167 89 aaKnown RBP23.63■■□□□ 1.37
CLN3-230ENST00000568076 ENGASEQ8NFI3 743 aa23.63■■□□□ 1.37
CLN3-230ENST00000568076 PCDHA7Q9UN72 937 aa23.63■■□□□ 1.37
CLN3-230ENST00000568076 ZKSCAN5Q9Y2L8 839 aa23.63■■□□□ 1.37
CLN3-230ENST00000568076 SLC12A7Q9Y666 1083 aa23.63■■□□□ 1.37
CLN3-230ENST00000568076 TOMM22Q9NS69 142 aa23.62■■□□□ 1.37
CLN3-230ENST00000568076 TFCP2L1Q9NZI6 479 aa23.62■■□□□ 1.37
CLN3-230ENST00000568076 CCDC69A6NI79 296 aa23.61■■□□□ 1.37
CLN3-230ENST00000568076 SEMA3EO15041 775 aa23.61■■□□□ 1.37
CLN3-230ENST00000568076 ANKRD2Q9GZV1 360 aa23.61■■□□□ 1.37
CLN3-230ENST00000568076 POLR3EQ9NVU0 708 aa23.61■■□□□ 1.37
CLN3-230ENST00000568076 ANAPC4Q9UJX5 808 aa23.61■■□□□ 1.37
CLN3-230ENST00000568076 ECM29Q5VYK3 1845 aa23.61■■□□□ 1.37
CLN3-230ENST00000568076 NID2Q14112 1375 aa23.61■■□□□ 1.37
CLN3-230ENST00000568076 UBE2Q2LH0YL09 131 aa23.61■■□□□ 1.37
CLN3-230ENST00000568076 ANO6Q4KMQ2 910 aa23.61■■□□□ 1.37
CLN3-230ENST00000568076 CPLX2Q6PUV4 134 aaKnown RBP23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms