RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 ADGRA1Q86SQ6 560 aa11.98□□□□□ -0.49
CLK3-220ENST00000567992 JMYQ8N9B5 988 aa11.98□□□□□ -0.49
CLK3-220ENST00000567992 HHIPL1Q96JK4 782 aa11.98□□□□□ -0.49
CLK3-220ENST00000567992 LAMB1P07942 1786 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 SALL3Q9BXA9 1300 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 GPR75-ASB3A0A0A6YYF3 556 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 BTDP43251 543 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 VEGFBP49765 207 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 HUNKP57058 714 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 RHBDL3P58872 404 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 NFIAQ12857 509 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 TNFAIP1Q13829 316 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 DEFB115Q30KQ5 88 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 NBPF12Q5TAG4 269 aaPredicted RBP11.97□□□□□ -0.49
CLK3-220ENST00000567992 FAM83AQ86UY5 434 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 OTUD7AQ8TE49 926 aaPredicted RBP11.97□□□□□ -0.49
CLK3-220ENST00000567992 TMEM39BQ9GZU3 492 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 RAI14Q9P0K7 980 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 FAM198AQ9UFP1 575 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 FZD1Q9UP38 647 aa11.97□□□□□ -0.49
CLK3-220ENST00000567992 SIPA1L1O43166 1804 aa11.96□□□□□ -0.49
CLK3-220ENST00000567992 IGSF3O75054 1194 aa11.96□□□□□ -0.49
CLK3-220ENST00000567992 WDHD1O75717 1129 aaPredicted RBP11.96□□□□□ -0.49
CLK3-220ENST00000567992 IGHDP01880 384 aa11.96□□□□□ -0.49
CLK3-220ENST00000567992 ATP5JP18859 108 aa11.96□□□□□ -0.49
CLK3-220ENST00000567992 FKBP1BP68106 108 aa11.96□□□□□ -0.49
CLK3-220ENST00000567992 CYP4F22Q6NT55 531 aa11.96□□□□□ -0.49
CLK3-220ENST00000567992 SMC5Q8IY18 1101 aa11.96□□□□□ -0.49
CLK3-220ENST00000567992 C2orf69Q8N8R5 385 aa11.96□□□□□ -0.49
CLK3-220ENST00000567992 BCL11AQ9H165 835 aa11.96□□□□□ -0.49
CLK3-220ENST00000567992 USP40Q9NVE5 1235 aa11.96□□□□□ -0.49
CLK3-220ENST00000567992 LRP2BPQ9P2M1 347 aa11.96□□□□□ -0.49
CLK3-220ENST00000567992 DDX60LQ5H9U9 1706 aaKnown RBP11.96□□□□□ -0.49
CLK3-220ENST00000567992 ATRNL1Q5VV63 1379 aa11.95□□□□□ -0.5
CLK3-220ENST00000567992 WDR33Q9C0J8 1336 aaKnown RBP11.95□□□□□ -0.5
CLK3-220ENST00000567992 FAM155AB1AL88 458 aaPredicted RBP11.95□□□□□ -0.5
CLK3-220ENST00000567992 GSTO1P78417 241 aa11.95□□□□□ -0.5
CLK3-220ENST00000567992 MAP3K11Q16584 847 aa11.95□□□□□ -0.5
CLK3-220ENST00000567992 TSHZ3Q63HK5 1081 aa11.95□□□□□ -0.5
CLK3-220ENST00000567992 NAA16Q6N069 864 aaPredicted RBP11.95□□□□□ -0.5
CLK3-220ENST00000567992 SLF2Q8IX21 1173 aa11.95□□□□□ -0.5
CLK3-220ENST00000567992 GCC1Q96CN9 775 aa11.95□□□□□ -0.5
CLK3-220ENST00000567992 EDC3Q96F86 508 aaKnown RBP11.95□□□□□ -0.5
CLK3-220ENST00000567992 CAPNS2Q96L46 248 aa11.95□□□□□ -0.5
CLK3-220ENST00000567992 HAUS7Q99871 368 aa11.95□□□□□ -0.5
CLK3-220ENST00000567992 IDI2Q9BXS1 227 aa11.95□□□□□ -0.5
CLK3-220ENST00000567992 DDX4Q9NQI0 724 aaKnown RBP11.95□□□□□ -0.5
CLK3-220ENST00000567992 ECHDC1Q9NTX5 307 aa11.95□□□□□ -0.5
CLK3-220ENST00000567992 TMOD2Q9NZR1 351 aa11.95□□□□□ -0.5
CLK3-220ENST00000567992 UBE2Q2LH0YL09 131 aa11.94□□□□□ -0.5
CLK3-220ENST00000567992 GOLIM4O00461 696 aa11.94□□□□□ -0.5
CLK3-220ENST00000567992 LDHCP07864 332 aa11.94□□□□□ -0.5
CLK3-220ENST00000567992 NF2P35240 595 aa11.94□□□□□ -0.5
CLK3-220ENST00000567992 TNNI2P48788 182 aa11.94□□□□□ -0.5
CLK3-220ENST00000567992 RGS3P49796 1198 aa11.94□□□□□ -0.5
CLK3-220ENST00000567992 LDLRAD1Q5T700 205 aa11.94□□□□□ -0.5
CLK3-220ENST00000567992 RGMBQ6NW40 437 aa11.94□□□□□ -0.5
CLK3-220ENST00000567992 ZFPM1Q8IX07 1006 aa11.94□□□□□ -0.5
CLK3-220ENST00000567992 DNAJC2Q99543 621 aaKnown RBP11.94□□□□□ -0.5
CLK3-220ENST00000567992 BOLA2Q9H3K6 86 aa11.94□□□□□ -0.5
CLK3-220ENST00000567992 COL2A1P02458 1487 aaPredicted RBP11.94□□□□□ -0.5
CLK3-220ENST00000567992 IDH1O75874 414 aaKnown RBP11.93□□□□□ -0.5
CLK3-220ENST00000567992 PPP4CP60510 307 aa11.93□□□□□ -0.5
CLK3-220ENST00000567992 TCP10Q12799 353 aa11.93□□□□□ -0.5
CLK3-220ENST00000567992 PRKG1Q13976 671 aa11.93□□□□□ -0.5
CLK3-220ENST00000567992 SUPT20HL1Q3ZLR7 823 aa11.93□□□□□ -0.5
CLK3-220ENST00000567992 SH3BP5LQ7L8J4 393 aa11.93□□□□□ -0.5
CLK3-220ENST00000567992 RASAL3Q86YV0 1011 aa11.93□□□□□ -0.5
CLK3-220ENST00000567992 MAGEB6Q8N7X4 407 aa11.93□□□□□ -0.5
CLK3-220ENST00000567992 PI4K2BQ8TCG2 481 aa11.93□□□□□ -0.5
CLK3-220ENST00000567992 FAM151AQ8WW52 585 aa11.93□□□□□ -0.5
CLK3-220ENST00000567992 RWDD1Q9H446 243 aaPredicted RBP11.93□□□□□ -0.5
CLK3-220ENST00000567992 PAG1Q9NWQ8 432 aa11.93□□□□□ -0.5
CLK3-220ENST00000567992 AATFQ9NY61 560 aaKnown RBP eCLIP11.93□□□□□ -0.5
CLK3-220ENST00000567992 ANGEL1Q9UNK9 670 aaKnown RBP11.93□□□□□ -0.5
CLK3-220ENST00000567992 NAV1Q8NEY1 1877 aa11.93□□□□□ -0.5
CLK3-220ENST00000567992 TTC41PQ6P2S7 1318 aa11.92□□□□□ -0.5
CLK3-220ENST00000567992 AK9Q5TCS8 1911 aa11.92□□□□□ -0.5
CLK3-220ENST00000567992 TCRBV5S4A2TA0A5A2 114 aa11.92□□□□□ -0.5
CLK3-220ENST00000567992 AOC2O75106 756 aa11.92□□□□□ -0.5
CLK3-220ENST00000567992 ENTPD3O75355 529 aa11.92□□□□□ -0.5
CLK3-220ENST00000567992 USP2O75604 605 aaPredicted RBP11.92□□□□□ -0.5
CLK3-220ENST00000567992 NPM3O75607 178 aaKnown RBP11.92□□□□□ -0.5
CLK3-220ENST00000567992 MAP4K4O95819 1239 aaPredicted RBP11.92□□□□□ -0.5
CLK3-220ENST00000567992 SLC10A3P09131 477 aa11.92□□□□□ -0.5
CLK3-220ENST00000567992 PDE6AP16499 860 aa11.92□□□□□ -0.5
CLK3-220ENST00000567992 CYP7A1P22680 504 aa11.92□□□□□ -0.5
CLK3-220ENST00000567992 ECE1P42892 770 aa11.92□□□□□ -0.5
CLK3-220ENST00000567992 MAP3K12Q12852 859 aa11.92□□□□□ -0.5
CLK3-220ENST00000567992 TTF1Q15361 905 aaPredicted RBP11.92□□□□□ -0.5
CLK3-220ENST00000567992 ANKRD45Q5TZF3 282 aa11.92□□□□□ -0.5
CLK3-220ENST00000567992 TMED8Q6PL24 325 aaPredicted RBP11.92□□□□□ -0.5
CLK3-220ENST00000567992 SH3RF3Q8TEJ3 882 aaPredicted RBP11.92□□□□□ -0.5
CLK3-220ENST00000567992 ZIC5Q96T25 663 aa11.92□□□□□ -0.5
CLK3-220ENST00000567992 CHGBP05060 677 aa11.91□□□□□ -0.5
CLK3-220ENST00000567992 MX1P20591 662 aa11.91□□□□□ -0.5
CLK3-220ENST00000567992 DYNLL1P63167 89 aaKnown RBP11.91□□□□□ -0.5
CLK3-220ENST00000567992 TTLL12Q14166 644 aaPredicted RBP11.91□□□□□ -0.5
CLK3-220ENST00000567992 SLFNL1Q499Z3 407 aa11.91□□□□□ -0.5
CLK3-220ENST00000567992 PAXIP1Q6ZW49 1069 aaPredicted RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms