RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 SULF1Q8IWU6 871 aa12.08□□□□□ -0.48
CLN3-220ENST00000566040 ZFPM1Q8IX07 1006 aa12.08□□□□□ -0.48
CLN3-220ENST00000566040 JMYQ8N9B5 988 aa12.08□□□□□ -0.48
CLN3-220ENST00000566040 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLN3-220ENST00000566040 TMEM39BQ9GZU3 492 aa12.08□□□□□ -0.48
CLN3-220ENST00000566040 DEFB129Q9H1M3 183 aa12.08□□□□□ -0.48
CLN3-220ENST00000566040 DDX4Q9NQI0 724 aaKnown RBP12.08□□□□□ -0.48
CLN3-220ENST00000566040 MAST3O60307 1309 aa12.08□□□□□ -0.48
CLN3-220ENST00000566040 GPR75-ASB3A0A0A6YYF3 556 aa12.07□□□□□ -0.48
CLN3-220ENST00000566040 FAM155AB1AL88 458 aaPredicted RBP12.07□□□□□ -0.48
CLN3-220ENST00000566040 SLURP2P0DP57 97 aa12.07□□□□□ -0.48
CLN3-220ENST00000566040 VEGFBP49765 207 aa12.07□□□□□ -0.48
CLN3-220ENST00000566040 RASA3Q14644 834 aa12.07□□□□□ -0.48
CLN3-220ENST00000566040 GORABQ5T7V8 394 aa12.07□□□□□ -0.48
CLN3-220ENST00000566040 CLASRPQ8N2M8 674 aaKnown RBP12.07□□□□□ -0.48
CLN3-220ENST00000566040 PI4K2BQ8TCG2 481 aa12.07□□□□□ -0.48
CLN3-220ENST00000566040 ZIC5Q96T25 663 aa12.07□□□□□ -0.48
CLN3-220ENST00000566040 ABCF2Q9UG63 623 aa12.07□□□□□ -0.48
CLN3-220ENST00000566040 MKRN1Q9UHC7 482 aaKnown RBP12.07□□□□□ -0.48
CLN3-220ENST00000566040 MYH8P13535 1937 aa12.07□□□□□ -0.48
CLN3-220ENST00000566040 COL2A1P02458 1487 aaPredicted RBP12.07□□□□□ -0.48
CLN3-220ENST00000566040 TCRBV5S4A2TA0A5A2 114 aa12.06□□□□□ -0.48
CLN3-220ENST00000566040 TCP10L2B9ZVM9 353 aa12.06□□□□□ -0.48
CLN3-220ENST00000566040 ATP5JP18859 108 aa12.06□□□□□ -0.48
CLN3-220ENST00000566040 RBM5P52756 815 aaKnown RBP eCLIP12.06□□□□□ -0.48
CLN3-220ENST00000566040 AAMPQ13685 434 aa12.06□□□□□ -0.48
CLN3-220ENST00000566040 CCDC158Q5M9N0 1113 aa12.06□□□□□ -0.48
CLN3-220ENST00000566040 FKBP1CQ5VVH2 108 aa12.06□□□□□ -0.48
CLN3-220ENST00000566040 ZNF408Q9H9D4 720 aa12.06□□□□□ -0.48
CLN3-220ENST00000566040 VEZTQ9HBM0 779 aa12.06□□□□□ -0.48
CLN3-220ENST00000566040 GBA2Q9HCG7 927 aaPredicted RBP12.06□□□□□ -0.48
CLN3-220ENST00000566040 BTDP43251 543 aa12.05□□□□□ -0.48
CLN3-220ENST00000566040 MAP3K11Q16584 847 aa12.05□□□□□ -0.48
CLN3-220ENST00000566040 LDLRAD1Q5T700 205 aa12.05□□□□□ -0.48
CLN3-220ENST00000566040 CYP4F22Q6NT55 531 aa12.05□□□□□ -0.48
CLN3-220ENST00000566040 ERICH6Q7L0X2 663 aa12.05□□□□□ -0.48
CLN3-220ENST00000566040 ZGPATQ8N5A5 531 aaKnown RBP12.05□□□□□ -0.48
CLN3-220ENST00000566040 HHIPL1Q96JK4 782 aa12.05□□□□□ -0.48
CLN3-220ENST00000566040 HAUS7Q99871 368 aa12.05□□□□□ -0.48
CLN3-220ENST00000566040 PPP2R3BQ9Y5P8 575 aa12.05□□□□□ -0.48
CLN3-220ENST00000566040 GREB1LQ9C091 1923 aaPredicted RBP12.05□□□□□ -0.48
CLN3-220ENST00000566040 IFIT2P09913 472 aaKnown RBP12.04□□□□□ -0.48
CLN3-220ENST00000566040 FAM83AQ86UY5 434 aa12.04□□□□□ -0.48
CLN3-220ENST00000566040 DZIP1Q86YF9 867 aaKnown RBP12.04□□□□□ -0.48
CLN3-220ENST00000566040 IDI2Q9BXS1 227 aa12.04□□□□□ -0.48
CLN3-220ENST00000566040 BOLA2Q9H3K6 86 aa12.04□□□□□ -0.48
CLN3-220ENST00000566040 LOC285556D6RIA3 1793 aa12.04□□□□□ -0.48
CLN3-220ENST00000566040 UBE2Q2LH0YL09 131 aa12.03□□□□□ -0.48
CLN3-220ENST00000566040 GOLIM4O00461 696 aa12.03□□□□□ -0.48
CLN3-220ENST00000566040 AOC2O75106 756 aa12.03□□□□□ -0.48
CLN3-220ENST00000566040 USP2O75604 605 aaPredicted RBP12.03□□□□□ -0.48
CLN3-220ENST00000566040 PDE4AP27815 886 aa12.03□□□□□ -0.48
CLN3-220ENST00000566040 GJA5P36382 358 aa12.03□□□□□ -0.48
CLN3-220ENST00000566040 RGS3P49796 1198 aa12.03□□□□□ -0.48
CLN3-220ENST00000566040 PPP4CP60510 307 aa12.03□□□□□ -0.48
CLN3-220ENST00000566040 DYNLL1P63167 89 aaKnown RBP12.03□□□□□ -0.48
CLN3-220ENST00000566040 SPTY2D1Q68D10 685 aaPredicted RBP12.03□□□□□ -0.48
CLN3-220ENST00000566040 RASAL3Q86YV0 1011 aa12.03□□□□□ -0.48
CLN3-220ENST00000566040 SH3RF3Q8TEJ3 882 aaPredicted RBP12.03□□□□□ -0.48
CLN3-220ENST00000566040 CLMNQ96JQ2 1002 aa12.03□□□□□ -0.48
CLN3-220ENST00000566040 RIOK1Q9BRS2 568 aaKnown RBP12.03□□□□□ -0.48
CLN3-220ENST00000566040 USP40Q9NVE5 1235 aa12.03□□□□□ -0.48
CLN3-220ENST00000566040 RAI14Q9P0K7 980 aa12.03□□□□□ -0.48
CLN3-220ENST00000566040 DDTLA6NHG4 134 aaPredicted RBP12.02□□□□□ -0.49
CLN3-220ENST00000566040 SLC10A3P09131 477 aa12.02□□□□□ -0.49
CLN3-220ENST00000566040 PDE6AP16499 860 aa12.02□□□□□ -0.49
CLN3-220ENST00000566040 HUNKP57058 714 aa12.02□□□□□ -0.49
CLN3-220ENST00000566040 EVX2Q03828 476 aa12.02□□□□□ -0.49
CLN3-220ENST00000566040 DEFB115Q30KQ5 88 aa12.02□□□□□ -0.49
CLN3-220ENST00000566040 FAM151AQ8WW52 585 aa12.02□□□□□ -0.49
CLN3-220ENST00000566040 GCC1Q96CN9 775 aa12.02□□□□□ -0.49
CLN3-220ENST00000566040 CAPNS2Q96L46 248 aa12.02□□□□□ -0.49
CLN3-220ENST00000566040 ECHDC1Q9NTX5 307 aa12.02□□□□□ -0.49
CLN3-220ENST00000566040 PAG1Q9NWQ8 432 aa12.02□□□□□ -0.49
CLN3-220ENST00000566040 LRP2BPQ9P2M1 347 aa12.02□□□□□ -0.49
CLN3-220ENST00000566040 STAP2Q9UGK3 403 aa12.02□□□□□ -0.49
CLN3-220ENST00000566040 ABT1Q9ULW3 272 aaKnown RBP12.02□□□□□ -0.49
CLN3-220ENST00000566040 WDR33Q9C0J8 1336 aaKnown RBP12.02□□□□□ -0.49
CLN3-220ENST00000566040 ZSWIM8A7E2V4 1837 aa12.02□□□□□ -0.49
CLN3-220ENST00000566040 LAMA4Q16363 1823 aa12.02□□□□□ -0.49
CLN3-220ENST00000566040 MYO1BO43795 1136 aa12.01□□□□□ -0.49
CLN3-220ENST00000566040 FKBP1BP68106 108 aa12.01□□□□□ -0.49
CLN3-220ENST00000566040 MAP3K10Q02779 954 aa12.01□□□□□ -0.49
CLN3-220ENST00000566040 NUCB1Q02818 461 aa12.01□□□□□ -0.49
CLN3-220ENST00000566040 TCP10Q12799 353 aa12.01□□□□□ -0.49
CLN3-220ENST00000566040 PRKG1Q13976 671 aa12.01□□□□□ -0.49
CLN3-220ENST00000566040 NAA16Q6N069 864 aaPredicted RBP12.01□□□□□ -0.49
CLN3-220ENST00000566040 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.01□□□□□ -0.49
CLN3-220ENST00000566040 MAGEB6Q8N7X4 407 aa12.01□□□□□ -0.49
CLN3-220ENST00000566040 DNAJC2Q99543 621 aaKnown RBP12.01□□□□□ -0.49
CLN3-220ENST00000566040 BCL11AQ9H165 835 aa12.01□□□□□ -0.49
CLN3-220ENST00000566040 DNAJC18Q9H819 358 aa12.01□□□□□ -0.49
CLN3-220ENST00000566040 AATFQ9NY61 560 aaKnown RBP eCLIP12.01□□□□□ -0.49
CLN3-220ENST00000566040 SMIM22K7EJ46 135 aa12□□□□□ -0.49
CLN3-220ENST00000566040 ENTPD3O75355 529 aa12□□□□□ -0.49
CLN3-220ENST00000566040 NPM3O75607 178 aaKnown RBP12□□□□□ -0.49
CLN3-220ENST00000566040 IDH1O75874 414 aaKnown RBP12□□□□□ -0.49
CLN3-220ENST00000566040 CYP7A1P22680 504 aa12□□□□□ -0.49
CLN3-220ENST00000566040 ADD2P35612 726 aa12□□□□□ -0.49
CLN3-220ENST00000566040 RRP1BQ14684 758 aaKnown RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms