RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 FOCADQ5VW36 1801 aa24.8■■□□□ 1.56
CLN3-212ENST00000564574 SPDYE2BA6NHP3 402 aa24.8■■□□□ 1.56
CLN3-212ENST00000564574 SPDYE6P0CI01 402 aa24.8■■□□□ 1.56
CLN3-212ENST00000564574 APOBEC3HQ6NTF7 200 aaKnown RBP24.8■■□□□ 1.56
CLN3-212ENST00000564574 ZBED3Q96IU2 234 aaPredicted RBP24.8■■□□□ 1.56
CLN3-212ENST00000564574 RIOK1Q9BRS2 568 aaKnown RBP24.8■■□□□ 1.56
CLN3-212ENST00000564574 ADARB2Q9NS39 739 aaKnown RBP24.8■■□□□ 1.56
CLN3-212ENST00000564574 AATFQ9NY61 560 aaKnown RBP eCLIP24.8■■□□□ 1.56
CLN3-212ENST00000564574 SHTN1A0MZ66 631 aa24.79■■□□□ 1.56
CLN3-212ENST00000564574 M0R2C6 588 aa24.79■■□□□ 1.56
CLN3-212ENST00000564574 EPS15P42566 896 aa24.79■■□□□ 1.56
CLN3-212ENST00000564574 KIF4BQ2VIQ3 1234 aa24.79■■□□□ 1.56
CLN3-212ENST00000564574 MIGA1Q8NAN2 632 aa24.79■■□□□ 1.56
CLN3-212ENST00000564574 SEC62Q99442 399 aaKnown RBP24.79■■□□□ 1.56
CLN3-212ENST00000564574 SGSM2O43147 1006 aa24.78■■□□□ 1.56
CLN3-212ENST00000564574 EIF5BO60841 1220 aaKnown RBP24.78■■□□□ 1.56
CLN3-212ENST00000564574 MBD4O95243 580 aa24.78■■□□□ 1.56
CLN3-212ENST00000564574 ESYT1Q9BSJ8 1104 aa24.78■■□□□ 1.56
CLN3-212ENST00000564574 GPAA1O43292 621 aa24.77■■□□□ 1.56
CLN3-212ENST00000564574 MYO1BO43795 1136 aa24.77■■□□□ 1.56
CLN3-212ENST00000564574 GNAT2P19087 354 aa24.77■■□□□ 1.56
CLN3-212ENST00000564574 SAMD7Q7Z3H4 446 aa24.77■■□□□ 1.56
CLN3-212ENST00000564574 PRMT6Q96LA8 375 aaPredicted RBP24.77■■□□□ 1.56
CLN3-212ENST00000564574 CCDC171Q6TFL3 1326 aa24.77■■□□□ 1.56
CLN3-212ENST00000564574 WNT10BO00744 389 aa24.76■■□□□ 1.55
CLN3-212ENST00000564574 DYNLL1P63167 89 aaKnown RBP24.76■■□□□ 1.55
CLN3-212ENST00000564574 TBC1D10BQ4KMP7 808 aaPredicted RBP24.76■■□□□ 1.55
CLN3-212ENST00000564574 USP50Q70EL3 339 aaPredicted RBP24.76■■□□□ 1.55
CLN3-212ENST00000564574 LCORLQ8N3X6 602 aa24.76■■□□□ 1.55
CLN3-212ENST00000564574 STRBPQ96SI9 672 aaKnown RBP24.76■■□□□ 1.55
CLN3-212ENST00000564574 ARMT1Q9H993 441 aa24.76■■□□□ 1.55
CLN3-212ENST00000564574 GPBP1L1Q9HC44 474 aaPredicted RBP24.76■■□□□ 1.55
CLN3-212ENST00000564574 USP40Q9NVE5 1235 aa24.76■■□□□ 1.55
CLN3-212ENST00000564574 EPHX2P34913 555 aa24.75■■□□□ 1.55
CLN3-212ENST00000564574 RHBDL3P58872 404 aa24.75■■□□□ 1.55
CLN3-212ENST00000564574 RBM26Q5T8P6 1007 aaKnown RBP24.75■■□□□ 1.55
CLN3-212ENST00000564574 CDC42EP5Q6NZY7 148 aa24.75■■□□□ 1.55
CLN3-212ENST00000564574 CRNKL1Q9BZJ0 848 aaKnown RBP24.75■■□□□ 1.55
CLN3-212ENST00000564574 PCDHAC2Q9Y5I4 1007 aa24.75■■□□□ 1.55
CLN3-212ENST00000564574 RPAP1Q9BWH6 1393 aaPredicted RBP24.75■■□□□ 1.55
CLN3-212ENST00000564574 POTECB2RU33 542 aa24.74■■□□□ 1.55
CLN3-212ENST00000564574 ZNF589Q86UQ0 364 aaPredicted RBP24.74■■□□□ 1.55
CLN3-212ENST00000564574 TRPM4Q8TD43 1214 aa24.74■■□□□ 1.55
CLN3-212ENST00000564574 SH3RF3Q8TEJ3 882 aaPredicted RBP24.74■■□□□ 1.55
CLN3-212ENST00000564574 ZNF526Q8TF50 670 aaPredicted RBP24.74■■□□□ 1.55
CLN3-212ENST00000564574 TMOD2Q9NZR1 351 aa24.74■■□□□ 1.55
CLN3-212ENST00000564574 NAV1Q8NEY1 1877 aa24.73■■□□□ 1.55
CLN3-212ENST00000564574 EGFRP00533 1210 aa24.73■■□□□ 1.55
CLN3-212ENST00000564574 SPDYE2Q495Y8 402 aa24.73■■□□□ 1.55
CLN3-212ENST00000564574 CCDC129Q6ZRS4 1044 aa24.73■■□□□ 1.55
CLN3-212ENST00000564574 PNMA8AQ86V59 439 aaPredicted RBP24.73■■□□□ 1.55
CLN3-212ENST00000564574 TEX11Q8IYF3 940 aa24.73■■□□□ 1.55
CLN3-212ENST00000564574 TAF1DQ9H5J8 278 aaPredicted RBP24.73■■□□□ 1.55
CLN3-212ENST00000564574 TDRD3Q9H7E2 651 aaKnown RBP24.73■■□□□ 1.55
CLN3-212ENST00000564574 VEGFAP15692 232 aaPredicted RBP24.72■■□□□ 1.55
CLN3-212ENST00000564574 NBPF9Q3BBW0 867 aa24.72■■□□□ 1.55
CLN3-212ENST00000564574 C8orf34Q49A92 452 aa24.72■■□□□ 1.55
CLN3-212ENST00000564574 FKBP1CQ5VVH2 108 aa24.72■■□□□ 1.55
CLN3-212ENST00000564574 IDI2Q9BXS1 227 aa24.72■■□□□ 1.55
CLN3-212ENST00000564574 IL25Q9H293 177 aa24.72■■□□□ 1.55
CLN3-212ENST00000564574 ZNF70Q9UC06 446 aaPredicted RBP24.72■■□□□ 1.55
CLN3-212ENST00000564574 SLC4A4Q9Y6R1 1079 aa24.72■■□□□ 1.55
CLN3-212ENST00000564574 NPM3O75607 178 aaKnown RBP24.71■■□□□ 1.55
CLN3-212ENST00000564574 KIAA1211Q6ZU35 1233 aa24.71■■□□□ 1.55
CLN3-212ENST00000564574 MYH1P12882 1939 aa24.71■■□□□ 1.55
CLN3-212ENST00000564574 PATL2C9JE40 543 aaKnown RBP24.7■■□□□ 1.54
CLN3-212ENST00000564574 REC8O95072 547 aa24.7■■□□□ 1.54
CLN3-212ENST00000564574 HIRAP54198 1017 aaPredicted RBP24.7■■□□□ 1.54
CLN3-212ENST00000564574 GIMAP6Q6P9H5 292 aa24.7■■□□□ 1.54
CLN3-212ENST00000564574 DSCC1Q9BVC3 393 aa24.7■■□□□ 1.54
CLN3-212ENST00000564574 RRAGCQ9HB90 399 aa24.7■■□□□ 1.54
CLN3-212ENST00000564574 ATP8A2Q9NTI2 1148 aa24.7■■□□□ 1.54
CLN3-212ENST00000564574 PITPNM2Q9BZ72 1349 aa24.69■■□□□ 1.54
CLN3-212ENST00000564574 WDHD1O75717 1129 aaPredicted RBP24.69■■□□□ 1.54
CLN3-212ENST00000564574 USP5P45974 858 aa24.69■■□□□ 1.54
CLN3-212ENST00000564574 ZC3H15Q8WU90 426 aaKnown RBP24.69■■□□□ 1.54
CLN3-212ENST00000564574 DDRGK1Q96HY6 314 aa24.69■■□□□ 1.54
CLN3-212ENST00000564574 NACAP1Q9BZK3 213 aa24.69■■□□□ 1.54
CLN3-212ENST00000564574 DDX60LQ5H9U9 1706 aaKnown RBP24.69■■□□□ 1.54
CLN3-212ENST00000564574 CLRN2A0PK11 232 aa24.68■■□□□ 1.54
CLN3-212ENST00000564574 EPB41L2O43491 1005 aaKnown RBP24.68■■□□□ 1.54
CLN3-212ENST00000564574 HSPD1P10809 573 aaKnown RBP24.68■■□□□ 1.54
CLN3-212ENST00000564574 TNFAIP1Q13829 316 aa24.68■■□□□ 1.54
CLN3-212ENST00000564574 TGFBRAP1Q8WUH2 860 aa24.68■■□□□ 1.54
CLN3-212ENST00000564574 BAZ2AQ9UIF9 1905 aaKnown RBP24.68■■□□□ 1.54
CLN3-212ENST00000564574 ZMYM6O95789 1325 aa24.67■■□□□ 1.54
CLN3-212ENST00000564574 GSG1L2A8MUP6 293 aa24.67■■□□□ 1.54
CLN3-212ENST00000564574 PRKAB2O43741 272 aa24.67■■□□□ 1.54
CLN3-212ENST00000564574 ENTPD3O75355 529 aa24.67■■□□□ 1.54
CLN3-212ENST00000564574 TNNI2P48788 182 aa24.67■■□□□ 1.54
CLN3-212ENST00000564574 ALX1Q15699 326 aa24.67■■□□□ 1.54
CLN3-212ENST00000564574 APOBEC3FQ8IUX4 373 aaKnown RBP24.67■■□□□ 1.54
CLN3-212ENST00000564574 SDR42E1Q8WUS8 393 aa24.67■■□□□ 1.54
CLN3-212ENST00000564574 VEZTQ9HBM0 779 aa24.67■■□□□ 1.54
CLN3-212ENST00000564574 ANO2Q9NQ90 1003 aa24.67■■□□□ 1.54
CLN3-212ENST00000564574 POLR2AP24928 1970 aaKnown RBP24.67■■□□□ 1.54
CLN3-212ENST00000564574 FLT1P17948 1338 aa24.66■■□□□ 1.54
CLN3-212ENST00000564574 COL2A1P02458 1487 aaPredicted RBP24.66■■□□□ 1.54
CLN3-212ENST00000564574 APPP05067 770 aa24.66■■□□□ 1.54
CLN3-212ENST00000564574 VPS53Q5VIR6 699 aa24.66■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms