RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 KRT40Q6A162 431 aa15.65■□□□□ 0.1
CLK3-215ENST00000564353 KIAA1468Q9P260 1216 aa15.65■□□□□ 0.1
CLK3-215ENST00000564353 KCNJ14Q9UNX9 436 aa15.65■□□□□ 0.1
CLK3-215ENST00000564353 GOLGB1Q14789 3259 aaKnown RBP15.65■□□□□ 0.1
CLK3-215ENST00000564353 DHX16O60231 1041 aaKnown RBP15.65■□□□□ 0.1
CLK3-215ENST00000564353 SLC3A2P08195 630 aaKnown RBP15.65■□□□□ 0.1
CLK3-215ENST00000564353 BCAMP50895 628 aa15.65■□□□□ 0.1
CLK3-215ENST00000564353 PNOCQ13519 176 aa15.65■□□□□ 0.1
CLK3-215ENST00000564353 TMEM67Q5HYA8 995 aa15.65■□□□□ 0.1
CLK3-215ENST00000564353 TMC6Q7Z403 805 aa15.65■□□□□ 0.1
CLK3-215ENST00000564353 XPO4Q9C0E2 1151 aaKnown RBP15.65■□□□□ 0.1
CLK3-215ENST00000564353 CTAGE5O15320 804 aa15.64■□□□□ 0.09
CLK3-215ENST00000564353 FOXN1O15353 648 aa15.64■□□□□ 0.09
CLK3-215ENST00000564353 RANBP6O60518 1105 aaKnown RBP15.64■□□□□ 0.09
CLK3-215ENST00000564353 CYP19A1P11511 503 aaPredicted RBP15.64■□□□□ 0.09
CLK3-215ENST00000564353 APOA5Q6Q788 366 aa15.64■□□□□ 0.09
CLK3-215ENST00000564353 PKD1L3Q7Z443 1732 aa15.64■□□□□ 0.09
CLK3-215ENST00000564353 RASGRF1Q13972 1273 aa15.64■□□□□ 0.09
CLK3-215ENST00000564353 EPB41L4AQ9HCS5 686 aaPredicted RBP15.64■□□□□ 0.09
CLK3-215ENST00000564353 GOLGA8AA7E2F4 631 aa15.63■□□□□ 0.09
CLK3-215ENST00000564353 NBPF11Q86T75 865 aa15.63■□□□□ 0.09
CLK3-215ENST00000564353 NUP133Q8WUM0 1156 aa15.63■□□□□ 0.09
CLK3-215ENST00000564353 ZSWIM5Q9P217 1185 aa15.63■□□□□ 0.09
CLK3-215ENST00000564353 IFIT3O14879 490 aaKnown RBP15.63■□□□□ 0.09
CLK3-215ENST00000564353 AXDND1Q5T1B0 1012 aaPredicted RBP15.63■□□□□ 0.09
CLK3-215ENST00000564353 PDCL2Q8N4E4 241 aa15.63■□□□□ 0.09
CLK3-215ENST00000564353 VGLL2Q8N8G2 317 aa15.63■□□□□ 0.09
CLK3-215ENST00000564353 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.63■□□□□ 0.09
CLK3-215ENST00000564353 NAPBQ9H115 298 aa15.63■□□□□ 0.09
CLK3-215ENST00000564353 SH2B2O14492 632 aaPredicted RBP15.63■□□□□ 0.09
CLK3-215ENST00000564353 ZBTB43O43298 467 aa15.63■□□□□ 0.09
CLK3-215ENST00000564353 GRIN1Q05586 938 aa15.63■□□□□ 0.09
CLK3-215ENST00000564353 SLC4A8Q2Y0W8 1093 aa15.63■□□□□ 0.09
CLK3-215ENST00000564353 CEP135Q66GS9 1140 aa15.63■□□□□ 0.09
CLK3-215ENST00000564353 KCNG4Q8TDN1 519 aa15.63■□□□□ 0.09
CLK3-215ENST00000564353 MAP7D2Q96T17 732 aa15.63■□□□□ 0.09
CLK3-215ENST00000564353 NWD2Q9ULI1 1742 aa15.62■□□□□ 0.09
CLK3-215ENST00000564353 SUSD4Q5VX71 490 aa15.62■□□□□ 0.09
CLK3-215ENST00000564353 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.62■□□□□ 0.09
CLK3-215ENST00000564353 MPHOSPH8Q99549 860 aa15.62■□□□□ 0.09
CLK3-215ENST00000564353 ABCF2Q9UG63 623 aa15.62■□□□□ 0.09
CLK3-215ENST00000564353 GTF2F1P35269 517 aaKnown RBP eCLIP15.62■□□□□ 0.09
CLK3-215ENST00000564353 EVCP57679 992 aa15.62■□□□□ 0.09
CLK3-215ENST00000564353 PDILTQ8N807 584 aa15.62■□□□□ 0.09
CLK3-215ENST00000564353 SPATA5Q8NB90 893 aa15.62■□□□□ 0.09
CLK3-215ENST00000564353 STRBPQ96SI9 672 aaKnown RBP15.62■□□□□ 0.09
CLK3-215ENST00000564353 POLR3EQ9NVU0 708 aa15.62■□□□□ 0.09
CLK3-215ENST00000564353 MINDY4BA8MYZ0 360 aa15.61■□□□□ 0.09
CLK3-215ENST00000564353 BTBD18B2RXH4 712 aa15.61■□□□□ 0.09
CLK3-215ENST00000564353 IARSP41252 1262 aaKnown RBP15.61■□□□□ 0.09
CLK3-215ENST00000564353 SYKP43405 635 aa15.61■□□□□ 0.09
CLK3-215ENST00000564353 TDO2P48775 406 aa15.61■□□□□ 0.09
CLK3-215ENST00000564353 CCZ1BP86790 482 aa15.61■□□□□ 0.09
CLK3-215ENST00000564353 CCZ1P86791 482 aaPredicted RBP15.61■□□□□ 0.09
CLK3-215ENST00000564353 TRIM28Q13263 835 aaKnown RBP15.61■□□□□ 0.09
CLK3-215ENST00000564353 SHC4Q6S5L8 630 aa15.61■□□□□ 0.09
CLK3-215ENST00000564353 LCORLQ8N3X6 602 aa15.61■□□□□ 0.09
CLK3-215ENST00000564353 SDR42E1Q8WUS8 393 aa15.61■□□□□ 0.09
CLK3-215ENST00000564353 NCBP1Q09161 790 aaKnown RBP15.61■□□□□ 0.09
CLK3-215ENST00000564353 GRAMD1CQ8IYS0 662 aa15.61■□□□□ 0.09
CLK3-215ENST00000564353 IFNL3Q8IZI9 196 aa15.61■□□□□ 0.09
CLK3-215ENST00000564353 CCDC112Q8NEF3 446 aa15.61■□□□□ 0.09
CLK3-215ENST00000564353 DPF2Q92785 391 aa15.61■□□□□ 0.09
CLK3-215ENST00000564353 MRFAP1L1Q96HT8 127 aa15.61■□□□□ 0.09
CLK3-215ENST00000564353 CCDC94Q9BW85 323 aaPredicted RBP15.61■□□□□ 0.09
CLK3-215ENST00000564353 NAT10Q9H0A0 1025 aaKnown RBP15.61■□□□□ 0.09
CLK3-215ENST00000564353 NUP188Q5SRE5 1749 aa15.61■□□□□ 0.09
CLK3-215ENST00000564353 ZMYM6O95789 1325 aa15.6■□□□□ 0.09
CLK3-215ENST00000564353 TNS2Q63HR2 1409 aa15.6■□□□□ 0.09
CLK3-215ENST00000564353 PDE8AO60658 829 aa15.6■□□□□ 0.09
CLK3-215ENST00000564353 ADAMTS2O95450 1211 aa15.6■□□□□ 0.09
CLK3-215ENST00000564353 ZNF827Q17R98 1081 aa15.6■□□□□ 0.09
CLK3-215ENST00000564353 IGDCC4Q8TDY8 1250 aa15.6■□□□□ 0.09
CLK3-215ENST00000564353 LY9Q9HBG7 655 aa15.6■□□□□ 0.09
CLK3-215ENST00000564353 FAM217BQ9NTX9 383 aaPredicted RBP15.6■□□□□ 0.09
CLK3-215ENST00000564353 SLC12A7Q9Y666 1083 aa15.6■□□□□ 0.09
CLK3-215ENST00000564353 NR5A1Q13285 461 aa15.6■□□□□ 0.09
CLK3-215ENST00000564353 CCDC24Q8N4L8 307 aa15.6■□□□□ 0.09
CLK3-215ENST00000564353 PLA2G12BQ9BX93 195 aa15.6■□□□□ 0.09
CLK3-215ENST00000564353 TMX1Q9H3N1 280 aa15.6■□□□□ 0.09
CLK3-215ENST00000564353 LAMB4A4D0S4 1761 aa15.6■□□□□ 0.09
CLK3-215ENST00000564353 CYP2D7A0A087X1C5 515 aa15.59■□□□□ 0.09
CLK3-215ENST00000564353 TCRBV5S4A2TA0A5A2 114 aa15.59■□□□□ 0.09
CLK3-215ENST00000564353 PRDM1O75626 825 aa15.59■□□□□ 0.09
CLK3-215ENST00000564353 PTPN14Q15678 1187 aa15.59■□□□□ 0.09
CLK3-215ENST00000564353 LONRF3Q496Y0 759 aa15.59■□□□□ 0.09
CLK3-215ENST00000564353 SARM1Q6SZW1 724 aa15.59■□□□□ 0.09
CLK3-215ENST00000564353 SLC4A4Q9Y6R1 1079 aa15.59■□□□□ 0.09
CLK3-215ENST00000564353 YEATS4O95619 227 aa15.59■□□□□ 0.09
CLK3-215ENST00000564353 PUM3Q15397 648 aaKnown RBP15.59■□□□□ 0.09
CLK3-215ENST00000564353 ARMCX5Q6P1M9 558 aa15.59■□□□□ 0.09
CLK3-215ENST00000564353 BICDL1Q6ZP65 573 aa15.59■□□□□ 0.09
CLK3-215ENST00000564353 BRAPQ7Z569 592 aa15.59■□□□□ 0.09
CLK3-215ENST00000564353 JAG2Q9Y219 1238 aa15.59■□□□□ 0.09
CLK3-215ENST00000564353 A0A1W2PQ27 194 aa15.58■□□□□ 0.09
CLK3-215ENST00000564353 A0A1W2PQ64 194 aa15.58■□□□□ 0.09
CLK3-215ENST00000564353 A0A1W2PQD8 194 aa15.58■□□□□ 0.09
CLK3-215ENST00000564353 EVX2Q03828 476 aa15.58■□□□□ 0.09
CLK3-215ENST00000564353 TRIM29Q14134 588 aa15.58■□□□□ 0.09
CLK3-215ENST00000564353 TEX13AQ9BXU3 409 aaPredicted RBP15.58■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms