RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 ZNRF3Q9ULT6 936 aa16.2■□□□□ 0.18
VPS39-206ENST00000562662 GPR75-ASB3A0A0A6YYF3 556 aa16.19■□□□□ 0.18
VPS39-206ENST00000562662 ZKSCAN1P17029 563 aaPredicted RBP16.19■□□□□ 0.18
VPS39-206ENST00000562662 ADCK5Q3MIX3 580 aa16.19■□□□□ 0.18
VPS39-206ENST00000562662 SLF2Q8IX21 1173 aa16.19■□□□□ 0.18
VPS39-206ENST00000562662 CTNNA3Q9UI47 895 aa16.19■□□□□ 0.18
VPS39-206ENST00000562662 TTF2Q9UNY4 1162 aaKnown RBP16.19■□□□□ 0.18
VPS39-206ENST00000562662 DAGLAQ9Y4D2 1042 aa16.19■□□□□ 0.18
VPS39-206ENST00000562662 F8W031 263 aaPredicted RBP16.18■□□□□ 0.18
VPS39-206ENST00000562662 SOCS7O14512 581 aa16.18■□□□□ 0.18
VPS39-206ENST00000562662 BTDP43251 543 aa16.18■□□□□ 0.18
VPS39-206ENST00000562662 SDR42E1Q8WUS8 393 aa16.18■□□□□ 0.18
VPS39-206ENST00000562662 IPO9Q96P70 1041 aaKnown RBP16.18■□□□□ 0.18
VPS39-206ENST00000562662 TM6SF1Q9BZW5 370 aa16.18■□□□□ 0.18
VPS39-206ENST00000562662 PSMD14O00487 310 aa16.17■□□□□ 0.18
VPS39-206ENST00000562662 RAD17O75943 681 aa16.17■□□□□ 0.18
VPS39-206ENST00000562662 BAG3O95817 575 aa16.17■□□□□ 0.18
VPS39-206ENST00000562662 APPP05067 770 aa16.17■□□□□ 0.18
VPS39-206ENST00000562662 VIL1P09327 827 aaKnown RBP16.17■□□□□ 0.18
VPS39-206ENST00000562662 RSBN1LQ6PCB5 846 aaPredicted RBP16.17■□□□□ 0.18
VPS39-206ENST00000562662 HHIPL2Q6UWX4 724 aa16.17■□□□□ 0.18
VPS39-206ENST00000562662 STOX1Q6ZVD7 989 aa16.17■□□□□ 0.18
VPS39-206ENST00000562662 CERS3Q8IU89 383 aa16.17■□□□□ 0.18
VPS39-206ENST00000562662 SH3RF3Q8TEJ3 882 aaPredicted RBP16.17■□□□□ 0.18
VPS39-206ENST00000562662 SNX21Q969T3 373 aa16.17■□□□□ 0.18
VPS39-206ENST00000562662 MRIQ9BWK5 157 aa16.17■□□□□ 0.18
VPS39-206ENST00000562662 CRNKL1Q9BZJ0 848 aaKnown RBP16.17■□□□□ 0.18
VPS39-206ENST00000562662 MYO3BQ8WXR4 1341 aa16.17■□□□□ 0.18
VPS39-206ENST00000562662 CD2BP2O95400 341 aaKnown RBP16.16■□□□□ 0.18
VPS39-206ENST00000562662 SCNN1DP51172 638 aa16.16■□□□□ 0.18
VPS39-206ENST00000562662 HDLBPQ00341 1268 aaKnown RBP16.16■□□□□ 0.18
VPS39-206ENST00000562662 KRT32Q14532 448 aa16.16■□□□□ 0.18
VPS39-206ENST00000562662 IMMTQ16891 758 aaKnown RBP16.16■□□□□ 0.18
VPS39-206ENST00000562662 GIMAP6Q6P9H5 292 aa16.16■□□□□ 0.18
VPS39-206ENST00000562662 KIAA0825Q8IV33 1275 aa16.16■□□□□ 0.18
VPS39-206ENST00000562662 JDP2Q8WYK2 163 aa16.16■□□□□ 0.18
VPS39-206ENST00000562662 JAKMIP1Q96N16 626 aaKnown RBP16.16■□□□□ 0.18
VPS39-206ENST00000562662 GMLQ99445 158 aa16.16■□□□□ 0.18
VPS39-206ENST00000562662 NOL10Q9BSC4 688 aaKnown RBP16.16■□□□□ 0.18
VPS39-206ENST00000562662 NACAP1Q9BZK3 213 aa16.16■□□□□ 0.18
VPS39-206ENST00000562662 NBPF3Q9H094 633 aa16.16■□□□□ 0.18
VPS39-206ENST00000562662 NAPBQ9H115 298 aa16.16■□□□□ 0.18
VPS39-206ENST00000562662 ZSWIM6Q9HCJ5 1215 aa16.16■□□□□ 0.18
VPS39-206ENST00000562662 CASTP20810 708 aaKnown RBP16.15■□□□□ 0.18
VPS39-206ENST00000562662 TDO2P48775 406 aa16.15■□□□□ 0.18
VPS39-206ENST00000562662 RHBDL3P58872 404 aa16.15■□□□□ 0.18
VPS39-206ENST00000562662 HAND2P61296 217 aa16.15■□□□□ 0.18
VPS39-206ENST00000562662 CXCL9Q07325 125 aa16.15■□□□□ 0.18
VPS39-206ENST00000562662 COL9A3Q14050 684 aaPredicted RBP16.15■□□□□ 0.18
VPS39-206ENST00000562662 TEKT1Q969V4 418 aa16.15■□□□□ 0.18
VPS39-206ENST00000562662 TBC1D2Q9BYX2 928 aa16.15■□□□□ 0.18
VPS39-206ENST00000562662 UPF3BQ9BZI7 483 aaKnown RBP16.15■□□□□ 0.18
VPS39-206ENST00000562662 DCP1AQ9NPI6 582 aaPredicted RBP16.15■□□□□ 0.18
VPS39-206ENST00000562662 ATP8A2Q9NTI2 1148 aa16.15■□□□□ 0.18
VPS39-206ENST00000562662 E7EWF7 191 aa16.14■□□□□ 0.17
VPS39-206ENST00000562662 ZNF213O14771 459 aa16.14■□□□□ 0.17
VPS39-206ENST00000562662 PLCG2P16885 1265 aa16.14■□□□□ 0.17
VPS39-206ENST00000562662 YBX3P16989 372 aaKnown RBP eCLIP16.14■□□□□ 0.17
VPS39-206ENST00000562662 PSMA5P28066 241 aa16.14■□□□□ 0.17
VPS39-206ENST00000562662 CRKP46108 304 aa16.14■□□□□ 0.17
VPS39-206ENST00000562662 NEK4P51957 841 aa16.14■□□□□ 0.17
VPS39-206ENST00000562662 CIAPIN1Q6FI81 312 aa16.14■□□□□ 0.17
VPS39-206ENST00000562662 ARHGAP27Q6ZUM4 889 aa16.14■□□□□ 0.17
VPS39-206ENST00000562662 TTC14Q96N46 770 aa16.14■□□□□ 0.17
VPS39-206ENST00000562662 MKRN1Q9UHC7 482 aaKnown RBP16.14■□□□□ 0.17
VPS39-206ENST00000562662 FZD9O00144 591 aa16.13■□□□□ 0.17
VPS39-206ENST00000562662 ST18O60284 1047 aa16.13■□□□□ 0.17
VPS39-206ENST00000562662 CPA1P15085 419 aa16.13■□□□□ 0.17
VPS39-206ENST00000562662 BECN1Q14457 450 aa16.13■□□□□ 0.17
VPS39-206ENST00000562662 APOBEC3HQ6NTF7 200 aaKnown RBP16.13■□□□□ 0.17
VPS39-206ENST00000562662 RUFY3Q7L099 469 aa16.13■□□□□ 0.17
VPS39-206ENST00000562662 TBC1D10CQ8IV04 446 aa16.13■□□□□ 0.17
VPS39-206ENST00000562662 AGBL3Q8NEM8 1001 aa16.13■□□□□ 0.17
VPS39-206ENST00000562662 IL27Q8NEV9 243 aa16.13■□□□□ 0.17
VPS39-206ENST00000562662 ZDHHC15Q96MV8 337 aa16.13■□□□□ 0.17
VPS39-206ENST00000562662 NEK1Q96PY6 1258 aa16.13■□□□□ 0.17
VPS39-206ENST00000562662 SERPINA10Q9UK55 444 aa16.13■□□□□ 0.17
VPS39-206ENST00000562662 SRCAPQ6ZRS2 3230 aa16.13■□□□□ 0.17
VPS39-206ENST00000562662 CTR9Q6PD62 1173 aa16.12■□□□□ 0.17
VPS39-206ENST00000562662 BLOC1S2Q6QNY1 142 aa16.12■□□□□ 0.17
VPS39-206ENST00000562662 HSCBQ8IWL3 235 aa16.12■□□□□ 0.17
VPS39-206ENST00000562662 TEX11Q8IYF3 940 aa16.12■□□□□ 0.17
VPS39-206ENST00000562662 ANAPC4Q9UJX5 808 aa16.12■□□□□ 0.17
VPS39-206ENST00000562662 ZBTB12Q9Y330 459 aaPredicted RBP16.12■□□□□ 0.17
VPS39-206ENST00000562662 PCDHAC2Q9Y5I4 1007 aa16.12■□□□□ 0.17
VPS39-206ENST00000562662 CYP46A1Q9Y6A2 500 aa16.12■□□□□ 0.17
VPS39-206ENST00000562662 TACC3Q9Y6A5 838 aa16.12■□□□□ 0.17
VPS39-206ENST00000562662 LMNB1P20700 586 aa16.11■□□□□ 0.17
VPS39-206ENST00000562662 RPS6KB1P23443 525 aa16.11■□□□□ 0.17
VPS39-206ENST00000562662 USP5P45974 858 aa16.11■□□□□ 0.17
VPS39-206ENST00000562662 CTDSPL2Q05D32 466 aa16.11■□□□□ 0.17
VPS39-206ENST00000562662 PPARAQ07869 468 aa16.11■□□□□ 0.17
VPS39-206ENST00000562662 TNIP1Q15025 636 aa16.11■□□□□ 0.17
VPS39-206ENST00000562662 SBK1Q52WX2 424 aa16.11■□□□□ 0.17
VPS39-206ENST00000562662 TGFBRAP1Q8WUH2 860 aa16.11■□□□□ 0.17
VPS39-206ENST00000562662 MYH8P13535 1937 aa16.11■□□□□ 0.17
VPS39-206ENST00000562662 SIPA1L1O43166 1804 aa16.1■□□□□ 0.17
VPS39-206ENST00000562662 UTRNP46939 3433 aa16.1■□□□□ 0.17
VPS39-206ENST00000562662 CYP2D7A0A087X1C5 515 aa16.1■□□□□ 0.17
VPS39-206ENST00000562662 CFAP100Q494V2 611 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms