RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 GLB1P16278 677 aa5.78□□□□□ -1.48
VPS35-203ENST00000562420 ARNTP27540 789 aa5.78□□□□□ -1.48
VPS35-203ENST00000562420 RPS26P62854 115 aaKnown RBP5.78□□□□□ -1.48
VPS35-203ENST00000562420 ZNF252P-AS1Q0IIN9 211 aa5.78□□□□□ -1.48
VPS35-203ENST00000562420 ARTNQ5T4W7 220 aa5.78□□□□□ -1.48
VPS35-203ENST00000562420 NUTM2GQ5VZR2 741 aa5.78□□□□□ -1.48
VPS35-203ENST00000562420 FDX2Q6P4F2 183 aa5.78□□□□□ -1.48
VPS35-203ENST00000562420 SULF2Q8IWU5 870 aa5.78□□□□□ -1.48
VPS35-203ENST00000562420 RNF19AQ9NV58 838 aa5.78□□□□□ -1.48
VPS35-203ENST00000562420 TTF2Q9UNY4 1162 aaKnown RBP5.78□□□□□ -1.48
VPS35-203ENST00000562420 ALX3O95076 343 aa5.77□□□□□ -1.49
VPS35-203ENST00000562420 CTSBP07858 339 aa5.77□□□□□ -1.49
VPS35-203ENST00000562420 CTSHP09668 335 aa5.77□□□□□ -1.49
VPS35-203ENST00000562420 VAMP1P23763 118 aa5.77□□□□□ -1.49
VPS35-203ENST00000562420 TAGLNQ01995 201 aaKnown RBP5.77□□□□□ -1.49
VPS35-203ENST00000562420 LRRC14Q15048 493 aa5.77□□□□□ -1.49
VPS35-203ENST00000562420 TAF1CQ15572 869 aaPredicted RBP5.77□□□□□ -1.49
VPS35-203ENST00000562420 KIF4BQ2VIQ3 1234 aa5.77□□□□□ -1.49
VPS35-203ENST00000562420 TPTE2Q6XPS3 522 aa5.77□□□□□ -1.49
VPS35-203ENST00000562420 NBPF11Q86T75 865 aa5.77□□□□□ -1.49
VPS35-203ENST00000562420 SLC51AQ86UW1 340 aa5.77□□□□□ -1.49
VPS35-203ENST00000562420 MYRFLQ96LU7 910 aa5.77□□□□□ -1.49
VPS35-203ENST00000562420 UBL7Q96S82 380 aaPredicted RBP5.77□□□□□ -1.49
VPS35-203ENST00000562420 GSX1Q9H4S2 264 aaPredicted RBP5.77□□□□□ -1.49
VPS35-203ENST00000562420 CYP8B1Q9UNU6 501 aa5.77□□□□□ -1.49
VPS35-203ENST00000562420 DHX15O43143 795 aaKnown RBP5.76□□□□□ -1.49
VPS35-203ENST00000562420 TRIM37O94972 964 aa5.76□□□□□ -1.49
VPS35-203ENST00000562420 ADH5P11766 374 aa5.76□□□□□ -1.49
VPS35-203ENST00000562420 BMP6P22004 513 aa5.76□□□□□ -1.49
VPS35-203ENST00000562420 PREPP48147 710 aa5.76□□□□□ -1.49
VPS35-203ENST00000562420 ARMC10Q8N2F6 343 aa5.76□□□□□ -1.49
VPS35-203ENST00000562420 RGS22Q8NE09 1264 aa5.76□□□□□ -1.49
VPS35-203ENST00000562420 UTP4Q969X6 686 aaKnown RBP5.76□□□□□ -1.49
VPS35-203ENST00000562420 TP53INP1Q96A56 240 aa5.76□□□□□ -1.49
VPS35-203ENST00000562420 WDR18Q9BV38 432 aa5.76□□□□□ -1.49
VPS35-203ENST00000562420 VTI1BQ9UEU0 232 aa5.76□□□□□ -1.49
VPS35-203ENST00000562420 SART1O43290 800 aaKnown RBP5.75□□□□□ -1.49
VPS35-203ENST00000562420 AOC2O75106 756 aa5.75□□□□□ -1.49
VPS35-203ENST00000562420 CELA3AP09093 270 aa5.75□□□□□ -1.49
VPS35-203ENST00000562420 ZNF157P51786 506 aaPredicted RBP5.75□□□□□ -1.49
VPS35-203ENST00000562420 SOX4Q06945 474 aaPredicted RBP5.75□□□□□ -1.49
VPS35-203ENST00000562420 PDE3AQ14432 1141 aa5.75□□□□□ -1.49
VPS35-203ENST00000562420 CCDC85BQ15834 202 aaPredicted RBP5.75□□□□□ -1.49
VPS35-203ENST00000562420 PCNX4Q63HM2 1172 aa5.75□□□□□ -1.49
VPS35-203ENST00000562420 PRR23CQ6ZRP0 262 aa5.75□□□□□ -1.49
VPS35-203ENST00000562420 CCDC86Q9H6F5 360 aaKnown RBP5.75□□□□□ -1.49
VPS35-203ENST00000562420 PCDHGC5Q9Y5F6 944 aa5.75□□□□□ -1.49
VPS35-203ENST00000562420 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.74□□□□□ -1.49
VPS35-203ENST00000562420 GSC2O15499 205 aa5.74□□□□□ -1.49
VPS35-203ENST00000562420 FBXO24O75426 580 aa5.74□□□□□ -1.49
VPS35-203ENST00000562420 PAGE1O75459 146 aa5.74□□□□□ -1.49
VPS35-203ENST00000562420 ECEL1O95672 775 aa5.74□□□□□ -1.49
VPS35-203ENST00000562420 SLFN14P0C7P3 912 aa5.74□□□□□ -1.49
VPS35-203ENST00000562420 MEI1Q5TIA1 1274 aa5.74□□□□□ -1.49
VPS35-203ENST00000562420 LLGL2Q6P1M3 1020 aa5.74□□□□□ -1.49
VPS35-203ENST00000562420 FAM20CQ8IXL6 584 aa5.74□□□□□ -1.49
VPS35-203ENST00000562420 C2CD4AQ8NCU7 369 aaPredicted RBP5.74□□□□□ -1.49
VPS35-203ENST00000562420 STK35Q8TDR2 534 aa5.74□□□□□ -1.49
VPS35-203ENST00000562420 FAM161BQ96MY7 647 aa5.74□□□□□ -1.49
VPS35-203ENST00000562420 YIPF2Q9BWQ6 316 aa5.74□□□□□ -1.49
VPS35-203ENST00000562420 RAXQ9Y2V3 346 aa5.74□□□□□ -1.49
VPS35-203ENST00000562420 GAS2O43903 313 aaKnown RBP5.73□□□□□ -1.49
VPS35-203ENST00000562420 ZNF862O60290 1169 aa5.73□□□□□ -1.49
VPS35-203ENST00000562420 PWP1Q13610 501 aa5.73□□□□□ -1.49
VPS35-203ENST00000562420 TTBK2Q6IQ55 1244 aa5.73□□□□□ -1.49
VPS35-203ENST00000562420 AGMOQ6ZNB7 445 aa5.73□□□□□ -1.49
VPS35-203ENST00000562420 C12orf50Q8NA57 414 aaPredicted RBP5.73□□□□□ -1.49
VPS35-203ENST00000562420 EZH1Q92800 747 aaPredicted RBP5.73□□□□□ -1.49
VPS35-203ENST00000562420 RAD18Q9NS91 495 aa5.73□□□□□ -1.49
VPS35-203ENST00000562420 CRIM1Q9NZV1 1036 aa5.73□□□□□ -1.49
VPS35-203ENST00000562420 TMPRSS2O15393 492 aa5.72□□□□□ -1.49
VPS35-203ENST00000562420 LIG3P49916 1009 aa5.72□□□□□ -1.49
VPS35-203ENST00000562420 ERVK-24P63145 666 aa5.72□□□□□ -1.49
VPS35-203ENST00000562420 ID3Q02535 119 aa5.72□□□□□ -1.49
VPS35-203ENST00000562420 CCDC84Q86UT8 332 aaPredicted RBP5.72□□□□□ -1.49
VPS35-203ENST00000562420 CLEC10AQ8IUN9 316 aa5.72□□□□□ -1.49
VPS35-203ENST00000562420 KCNB2Q92953 911 aa5.72□□□□□ -1.49
VPS35-203ENST00000562420 GAL3ST3Q96A11 431 aa5.72□□□□□ -1.49
VPS35-203ENST00000562420 RSRP1Q9BUV0 290 aa5.72□□□□□ -1.49
VPS35-203ENST00000562420 ATXN3LQ9H3M9 355 aa5.72□□□□□ -1.49
VPS35-203ENST00000562420 BMP3P12645 472 aa5.71□□□□□ -1.5
VPS35-203ENST00000562420 ZC3H12AQ5D1E8 599 aaKnown RBP5.71□□□□□ -1.5
VPS35-203ENST00000562420 MAP1SQ66K74 1059 aaPredicted RBP5.71□□□□□ -1.5
VPS35-203ENST00000562420 GPBAR1Q8TDU6 330 aa5.71□□□□□ -1.5
VPS35-203ENST00000562420 FAM83CQ9BQN1 747 aa5.71□□□□□ -1.5
VPS35-203ENST00000562420 CBX8Q9HC52 389 aa5.71□□□□□ -1.5
VPS35-203ENST00000562420 METTL5Q9NRN9 209 aaKnown RBP5.71□□□□□ -1.5
VPS35-203ENST00000562420 ACTL7BQ9Y614 415 aa5.71□□□□□ -1.5
VPS35-203ENST00000562420 HYAL3O43820 417 aaPredicted RBP5.7□□□□□ -1.5
VPS35-203ENST00000562420 LIG1P18858 919 aa5.7□□□□□ -1.5
VPS35-203ENST00000562420 MAP4P27816 1152 aaKnown RBP5.7□□□□□ -1.5
VPS35-203ENST00000562420 CPSF6Q16630 551 aaKnown RBP eCLIP5.7□□□□□ -1.5
VPS35-203ENST00000562420 AKAP4Q5JQC9 854 aa5.7□□□□□ -1.5
VPS35-203ENST00000562420 RASIP1Q5U651 963 aa5.7□□□□□ -1.5
VPS35-203ENST00000562420 ERMP1Q7Z2K6 904 aa5.7□□□□□ -1.5
VPS35-203ENST00000562420 TRIM42Q8IWZ5 723 aa5.7□□□□□ -1.5
VPS35-203ENST00000562420 ACSS3Q9H6R3 686 aa5.7□□□□□ -1.5
VPS35-203ENST00000562420 GOLGA2P5Q9HBQ8 144 aa5.7□□□□□ -1.5
VPS35-203ENST00000562420 STOML1Q9UBI4 398 aa5.7□□□□□ -1.5
VPS35-203ENST00000562420 AP4E1Q9UPM8 1137 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms