RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 SP8Q8IXZ3 490 aa8.81□□□□□ -1
VPS39-204ENST00000561818 MB21D2Q8IYB1 491 aaPredicted RBP8.81□□□□□ -1
VPS39-204ENST00000561818 IFNL3Q8IZI9 196 aa8.81□□□□□ -1
VPS39-204ENST00000561818 SMARCC2Q8TAQ2 1214 aa8.81□□□□□ -1
VPS39-204ENST00000561818 CELF1Q92879 486 aaKnown RBP8.81□□□□□ -1
VPS39-204ENST00000561818 AKT1S1Q96B36 256 aa8.81□□□□□ -1
VPS39-204ENST00000561818 FAM84BQ96KN1 310 aaPredicted RBP8.81□□□□□ -1
VPS39-204ENST00000561818 ZNF396Q96N95 335 aaPredicted RBP8.81□□□□□ -1
VPS39-204ENST00000561818 SEC62Q99442 399 aaKnown RBP8.81□□□□□ -1
VPS39-204ENST00000561818 UBAC1Q9BSL1 405 aa8.81□□□□□ -1
VPS39-204ENST00000561818 COA1Q9GZY4 146 aa8.81□□□□□ -1
VPS39-204ENST00000561818 LRRC4BQ9NT99 713 aa8.81□□□□□ -1
VPS39-204ENST00000561818 ABCF2Q9UG63 623 aa8.81□□□□□ -1
VPS39-204ENST00000561818 SLC4A4Q9Y6R1 1079 aa8.81□□□□□ -1
VPS39-204ENST00000561818 BRWD3Q6RI45 1802 aa8.81□□□□□ -1
VPS39-204ENST00000561818 STK36Q9NRP7 1315 aa8.8□□□□□ -1
VPS39-204ENST00000561818 MYH13Q9UKX3 1938 aa8.8□□□□□ -1
VPS39-204ENST00000561818 GOLGA6L4A6NEF3 574 aa8.8□□□□□ -1
VPS39-204ENST00000561818 CCDC69A6NI79 296 aa8.8□□□□□ -1
VPS39-204ENST00000561818 POLRMTO00411 1230 aaKnown RBP8.8□□□□□ -1
VPS39-204ENST00000561818 CAVIN2O95810 425 aa8.8□□□□□ -1
VPS39-204ENST00000561818 ZNF445P59923 1031 aa8.8□□□□□ -1
VPS39-204ENST00000561818 FKBP1AP62942 108 aaKnown RBP8.8□□□□□ -1
VPS39-204ENST00000561818 TRIM29Q14134 588 aa8.8□□□□□ -1
VPS39-204ENST00000561818 SBK1Q52WX2 424 aa8.8□□□□□ -1
VPS39-204ENST00000561818 STYK1Q6J9G0 422 aa8.8□□□□□ -1
VPS39-204ENST00000561818 NOL8Q76FK4 1167 aaKnown RBP8.8□□□□□ -1
VPS39-204ENST00000561818 CCDC125Q86Z20 511 aa8.8□□□□□ -1
VPS39-204ENST00000561818 TRIM22Q8IYM9 498 aa8.8□□□□□ -1
VPS39-204ENST00000561818 SUPT20HQ8NEM7 779 aa8.8□□□□□ -1
VPS39-204ENST00000561818 HELBQ8NG08 1087 aaPredicted RBP8.8□□□□□ -1
VPS39-204ENST00000561818 SLC16A10Q8TF71 515 aa8.8□□□□□ -1
VPS39-204ENST00000561818 MASTLQ96GX5 879 aa8.8□□□□□ -1
VPS39-204ENST00000561818 RBM28Q9NW13 759 aaKnown RBP8.8□□□□□ -1
VPS39-204ENST00000561818 STK32BQ9NY57 414 aa8.8□□□□□ -1
VPS39-204ENST00000561818 LRRC37AA6NMS7 1700 aa8.8□□□□□ -1
VPS39-204ENST00000561818 CCDC88AQ3V6T2 1871 aa8.79□□□□□ -1
VPS39-204ENST00000561818 GOLGA8BA8MQT2 603 aa8.79□□□□□ -1
VPS39-204ENST00000561818 PPEF1O14829 653 aaPredicted RBP8.79□□□□□ -1
VPS39-204ENST00000561818 ZBTB43O43298 467 aa8.79□□□□□ -1
VPS39-204ENST00000561818 ORC4O43929 436 aa8.79□□□□□ -1
VPS39-204ENST00000561818 IL1R1P14778 569 aa8.79□□□□□ -1
VPS39-204ENST00000561818 MMP14P50281 582 aa8.79□□□□□ -1
VPS39-204ENST00000561818 METAP2P50579 478 aaKnown RBP eCLIP8.79□□□□□ -1
VPS39-204ENST00000561818 PPP4CP60510 307 aa8.79□□□□□ -1
VPS39-204ENST00000561818 SOGA3Q5TF21 947 aa8.79□□□□□ -1
VPS39-204ENST00000561818 TDRD7Q8NHU6 1098 aaKnown RBP8.79□□□□□ -1
VPS39-204ENST00000561818 CNKSR1Q969H4 720 aa8.79□□□□□ -1
VPS39-204ENST00000561818 FAM163AQ96GL9 167 aaPredicted RBP8.79□□□□□ -1
VPS39-204ENST00000561818 MAP3K14Q99558 947 aa8.79□□□□□ -1
VPS39-204ENST00000561818 VPS33BQ9H267 617 aa8.79□□□□□ -1
VPS39-204ENST00000561818 ANO8Q9HCE9 1232 aaPredicted RBP8.79□□□□□ -1
VPS39-204ENST00000561818 WWC3Q9ULE0 1092 aa8.79□□□□□ -1
VPS39-204ENST00000561818 MTMR6Q9Y217 621 aa8.79□□□□□ -1
VPS39-204ENST00000561818 ATP6V0A2Q9Y487 856 aa8.79□□□□□ -1
VPS39-204ENST00000561818 SLC12A7Q9Y666 1083 aa8.79□□□□□ -1
VPS39-204ENST00000561818 NDUFB9Q9Y6M9 179 aa8.79□□□□□ -1
VPS39-204ENST00000561818 CASZ1Q86V15 1759 aa8.78□□□□□ -1
VPS39-204ENST00000561818 KLF18A0A0U1RQI7 1052 aa8.78□□□□□ -1
VPS39-204ENST00000561818 PTPDC1A2A3K4 754 aa8.78□□□□□ -1
VPS39-204ENST00000561818 VPS37CA5D8V6 355 aaPredicted RBP8.78□□□□□ -1
VPS39-204ENST00000561818 GSG1L2A8MUP6 293 aa8.78□□□□□ -1
VPS39-204ENST00000561818 SH2B2O14492 632 aaPredicted RBP8.78□□□□□ -1
VPS39-204ENST00000561818 DDAH1O94760 285 aa8.78□□□□□ -1
VPS39-204ENST00000561818 UFL1O94874 794 aa8.78□□□□□ -1
VPS39-204ENST00000561818 FGRP09769 529 aa8.78□□□□□ -1
VPS39-204ENST00000561818 PDIA3P30101 505 aaKnown RBP8.78□□□□□ -1
VPS39-204ENST00000561818 KIF5BP33176 963 aa8.78□□□□□ -1
VPS39-204ENST00000561818 BAG6P46379 1132 aa8.78□□□□□ -1
VPS39-204ENST00000561818 GYG1P46976 350 aa8.78□□□□□ -1
VPS39-204ENST00000561818 PPARAQ07869 468 aa8.78□□□□□ -1
VPS39-204ENST00000561818 SAFBQ15424 915 aaKnown RBP eCLIP8.78□□□□□ -1
VPS39-204ENST00000561818 TMEM67Q5HYA8 995 aa8.78□□□□□ -1
VPS39-204ENST00000561818 PI16Q6UXB8 463 aa8.78□□□□□ -1
VPS39-204ENST00000561818 NFXL1Q6ZNB6 911 aa8.78□□□□□ -1
VPS39-204ENST00000561818 JMYQ8N9B5 988 aa8.78□□□□□ -1
VPS39-204ENST00000561818 NSUN4Q96CB9 384 aaKnown RBP8.78□□□□□ -1
VPS39-204ENST00000561818 CCDC34Q96HJ3 373 aa8.78□□□□□ -1
VPS39-204ENST00000561818 LMBRD1Q9NUN5 540 aa8.78□□□□□ -1
VPS39-204ENST00000561818 FAM205AQ6ZU69 1335 aa8.78□□□□□ -1
VPS39-204ENST00000561818 TNS1Q9HBL0 1735 aaKnown RBP8.77□□□□□ -1
VPS39-204ENST00000561818 ROBO3Q96MS0 1386 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 IFIT3O14879 490 aaKnown RBP8.77□□□□□ -1.01
VPS39-204ENST00000561818 CTAGE5O15320 804 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 SRGNP10124 158 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 GNAQP50148 359 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 AKAP17AQ02040 695 aaKnown RBP8.77□□□□□ -1.01
VPS39-204ENST00000561818 SCRN1Q12765 414 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 WTAPQ15007 396 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 CCDC183Q5T5S1 534 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 CHRDL2Q6WN34 429 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 STOX1Q6ZVD7 989 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 CATIPQ7Z7H3 387 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 NSUN7Q8NE18 718 aaKnown RBP8.77□□□□□ -1.01
VPS39-204ENST00000561818 KCNG4Q8TDN1 519 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 FBXO41Q8TF61 875 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 RIOK1Q9BRS2 568 aaKnown RBP8.77□□□□□ -1.01
VPS39-204ENST00000561818 MRIQ9BWK5 157 aa8.77□□□□□ -1.01
VPS39-204ENST00000561818 ZC3H12CQ9C0D7 883 aaKnown RBP8.77□□□□□ -1.01
VPS39-204ENST00000561818 DDX19AQ9NUU7 478 aaKnown RBP8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 114.9 ms