RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 DBNDD2Q9BQY9 259 aa19.28■□□□□ 0.68
VPS39-203ENST00000561797 GPR108Q9NPR9 543 aa19.28■□□□□ 0.68
VPS39-203ENST00000561797 CAPN15O75808 1086 aa19.27■□□□□ 0.68
VPS39-203ENST00000561797 ARID4AP29374 1257 aaPredicted RBP19.27■□□□□ 0.68
VPS39-203ENST00000561797 SPRYD7Q5W111 196 aa19.27■□□□□ 0.68
VPS39-203ENST00000561797 TBC1D9Q6ZT07 1266 aa19.27■□□□□ 0.68
VPS39-203ENST00000561797 ERICH6Q7L0X2 663 aa19.27■□□□□ 0.68
VPS39-203ENST00000561797 USP40Q9NVE5 1235 aa19.27■□□□□ 0.68
VPS39-203ENST00000561797 EXOC6BQ9Y2D4 811 aa19.27■□□□□ 0.68
VPS39-203ENST00000561797 DOCK2Q92608 1830 aa19.27■□□□□ 0.68
VPS39-203ENST00000561797 UQCRFS1P1P0C7P4 283 aa19.26■□□□□ 0.67
VPS39-203ENST00000561797 MCAMP43121 646 aa19.26■□□□□ 0.67
VPS39-203ENST00000561797 TCP10Q12799 353 aa19.26■□□□□ 0.67
VPS39-203ENST00000561797 TTC39AQ5SRH9 613 aa19.26■□□□□ 0.67
VPS39-203ENST00000561797 C20orf194Q5TEA3 1177 aa19.26■□□□□ 0.67
VPS39-203ENST00000561797 FKBP1CQ5VVH2 108 aa19.26■□□□□ 0.67
VPS39-203ENST00000561797 FAM83AQ86UY5 434 aa19.26■□□□□ 0.67
VPS39-203ENST00000561797 ANKRD13AQ8IZ07 590 aa19.26■□□□□ 0.67
VPS39-203ENST00000561797 SAGE1Q9NXZ1 904 aa19.26■□□□□ 0.67
VPS39-203ENST00000561797 CCDC158Q5M9N0 1113 aa19.25■□□□□ 0.67
VPS39-203ENST00000561797 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.25■□□□□ 0.67
VPS39-203ENST00000561797 WNK4Q96J92 1243 aa19.25■□□□□ 0.67
VPS39-203ENST00000561797 CCDC8Q9H0W5 538 aaPredicted RBP19.25■□□□□ 0.67
VPS39-203ENST00000561797 SNRKQ9NRH2 765 aa19.25■□□□□ 0.67
VPS39-203ENST00000561797 ZBTB40Q9NUA8 1239 aa19.25■□□□□ 0.67
VPS39-203ENST00000561797 UNCXA6NJT0 531 aa19.24■□□□□ 0.67
VPS39-203ENST00000561797 TM4SF4P48230 202 aa19.24■□□□□ 0.67
VPS39-203ENST00000561797 MECOMQ03112 1051 aa19.24■□□□□ 0.67
VPS39-203ENST00000561797 SLF2Q8IX21 1173 aa19.24■□□□□ 0.67
VPS39-203ENST00000561797 ELP3Q9H9T3 547 aa19.24■□□□□ 0.67
VPS39-203ENST00000561797 MAST2Q6P0Q8 1798 aa19.24■□□□□ 0.67
VPS39-203ENST00000561797 CDK5RAP2Q96SN8 1893 aa19.23■□□□□ 0.67
VPS39-203ENST00000561797 SREBF2Q12772 1141 aa19.23■□□□□ 0.67
VPS39-203ENST00000561797 NFIAQ12857 509 aa19.23■□□□□ 0.67
VPS39-203ENST00000561797 RPAP2Q8IXW5 612 aaPredicted RBP19.23■□□□□ 0.67
VPS39-203ENST00000561797 FAM151AQ8WW52 585 aa19.23■□□□□ 0.67
VPS39-203ENST00000561797 EAF2Q96CJ1 260 aaPredicted RBP19.23■□□□□ 0.67
VPS39-203ENST00000561797 YTHDC1Q96MU7 727 aaKnown RBP19.23■□□□□ 0.67
VPS39-203ENST00000561797 TLR7Q9NYK1 1049 aaKnown RBP19.23■□□□□ 0.67
VPS39-203ENST00000561797 RAI14Q9P0K7 980 aa19.23■□□□□ 0.67
VPS39-203ENST00000561797 GAKO14976 1311 aa19.23■□□□□ 0.67
VPS39-203ENST00000561797 APBB1O00213 710 aa19.22■□□□□ 0.67
VPS39-203ENST00000561797 BTDP43251 543 aa19.22■□□□□ 0.67
VPS39-203ENST00000561797 MAP3K9P80192 1104 aa19.22■□□□□ 0.67
VPS39-203ENST00000561797 PDE3AQ14432 1141 aa19.22■□□□□ 0.67
VPS39-203ENST00000561797 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.22■□□□□ 0.67
VPS39-203ENST00000561797 MIGA2Q7L4E1 593 aa19.22■□□□□ 0.67
VPS39-203ENST00000561797 ERC1Q8IUD2 1116 aa19.22■□□□□ 0.67
VPS39-203ENST00000561797 HOOK2Q96ED9 719 aa19.22■□□□□ 0.67
VPS39-203ENST00000561797 CHMP4BQ9H444 224 aaKnown RBP19.22■□□□□ 0.67
VPS39-203ENST00000561797 LRP2BPQ9P2M1 347 aa19.22■□□□□ 0.67
VPS39-203ENST00000561797 FAM198AQ9UFP1 575 aa19.22■□□□□ 0.67
VPS39-203ENST00000561797 DBNLQ9UJU6 430 aaKnown RBP19.22■□□□□ 0.67
VPS39-203ENST00000561797 MROH7-TTC4A0A0A0MT08 1334 aa19.22■□□□□ 0.67
VPS39-203ENST00000561797 RPAP1Q9BWH6 1393 aaPredicted RBP19.21■□□□□ 0.67
VPS39-203ENST00000561797 TBC1D8O95759 1140 aa19.21■□□□□ 0.67
VPS39-203ENST00000561797 ZBTB48P10074 688 aaPredicted RBP19.21■□□□□ 0.67
VPS39-203ENST00000561797 GJA5P36382 358 aa19.21■□□□□ 0.67
VPS39-203ENST00000561797 HSP90AB4PQ58FF6 505 aa19.21■□□□□ 0.67
VPS39-203ENST00000561797 SIRT2Q8IXJ6 389 aa19.21■□□□□ 0.67
VPS39-203ENST00000561797 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.21■□□□□ 0.67
VPS39-203ENST00000561797 ZNF384Q8TF68 577 aa19.21■□□□□ 0.67
VPS39-203ENST00000561797 FAM163AQ96GL9 167 aaPredicted RBP19.21■□□□□ 0.67
VPS39-203ENST00000561797 BCL11AQ9H165 835 aa19.21■□□□□ 0.67
VPS39-203ENST00000561797 IL1RAPL2Q9NP60 686 aa19.21■□□□□ 0.67
VPS39-203ENST00000561797 CSADQ9Y600 493 aa19.21■□□□□ 0.67
VPS39-203ENST00000561797 MANSC4A6NHS7 340 aaPredicted RBP19.2■□□□□ 0.66
VPS39-203ENST00000561797 HMMRO75330 724 aa19.2■□□□□ 0.66
VPS39-203ENST00000561797 LDHCP07864 332 aa19.2■□□□□ 0.66
VPS39-203ENST00000561797 RGS3P49796 1198 aa19.2■□□□□ 0.66
VPS39-203ENST00000561797 GSTO1P78417 241 aa19.2■□□□□ 0.66
VPS39-203ENST00000561797 VGLL4Q14135 290 aa19.2■□□□□ 0.66
VPS39-203ENST00000561797 DCAF15Q66K64 600 aa19.2■□□□□ 0.66
VPS39-203ENST00000561797 AACSQ86V21 672 aa19.2■□□□□ 0.66
VPS39-203ENST00000561797 ZFPM1Q8IX07 1006 aa19.2■□□□□ 0.66
VPS39-203ENST00000561797 NSUN4Q96CB9 384 aaKnown RBP19.2■□□□□ 0.66
VPS39-203ENST00000561797 OPTNQ96CV9 577 aa19.2■□□□□ 0.66
VPS39-203ENST00000561797 WRNIP1Q96S55 665 aa19.2■□□□□ 0.66
VPS39-203ENST00000561797 ZAP70P43403 619 aa19.19■□□□□ 0.66
VPS39-203ENST00000561797 RHPN1Q8TCX5 695 aa19.19■□□□□ 0.66
VPS39-203ENST00000561797 CNKSR2Q8WXI2 1034 aa19.19■□□□□ 0.66
VPS39-203ENST00000561797 ZKSCAN4Q969J2 545 aaPredicted RBP19.19■□□□□ 0.66
VPS39-203ENST00000561797 ZNF341Q9BYN7 854 aa19.19■□□□□ 0.66
VPS39-203ENST00000561797 GPR75-ASB3A0A0A6YYF3 556 aa19.18■□□□□ 0.66
VPS39-203ENST00000561797 CYP2E1P05181 493 aaPredicted RBP19.18■□□□□ 0.66
VPS39-203ENST00000561797 INHBEP58166 350 aa19.18■□□□□ 0.66
VPS39-203ENST00000561797 PICALMQ13492 652 aa19.18■□□□□ 0.66
VPS39-203ENST00000561797 ZSCAN29Q8IWY8 852 aaPredicted RBP19.18■□□□□ 0.66
VPS39-203ENST00000561797 IDI2Q9BXS1 227 aa19.18■□□□□ 0.66
VPS39-203ENST00000561797 FOCADQ5VW36 1801 aa19.18■□□□□ 0.66
VPS39-203ENST00000561797 ENTPD3O75355 529 aa19.17■□□□□ 0.66
VPS39-203ENST00000561797 IFNL1Q8IU54 200 aa19.17■□□□□ 0.66
VPS39-203ENST00000561797 OTUD5Q96G74 571 aa19.17■□□□□ 0.66
VPS39-203ENST00000561797 ZNF512BQ96KM6 892 aaPredicted RBP19.17■□□□□ 0.66
VPS39-203ENST00000561797 DDX4Q9NQI0 724 aaKnown RBP19.17■□□□□ 0.66
VPS39-203ENST00000561797 WDHD1O75717 1129 aaPredicted RBP19.16■□□□□ 0.66
VPS39-203ENST00000561797 INPP5BP32019 993 aa19.16■□□□□ 0.66
VPS39-203ENST00000561797 RHBDL3P58872 404 aa19.16■□□□□ 0.66
VPS39-203ENST00000561797 DGKZQ13574 1117 aa19.16■□□□□ 0.66
VPS39-203ENST00000561797 NAA16Q6N069 864 aaPredicted RBP19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms