RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 IFIT1P09914 478 aaKnown RBP23.7■■□□□ 1.38
VPS35-202ENST00000561713 CT47B1P0C2W7 299 aaPredicted RBP23.7■■□□□ 1.38
VPS35-202ENST00000561713 CETPP11597 493 aa23.7■■□□□ 1.38
VPS35-202ENST00000561713 ERO1BQ86YB8 467 aa23.7■■□□□ 1.38
VPS35-202ENST00000561713 ZDHHC15Q96MV8 337 aa23.7■■□□□ 1.38
VPS35-202ENST00000561713 IRF6O14896 467 aa23.69■■□□□ 1.38
VPS35-202ENST00000561713 TLR2O60603 784 aa23.69■■□□□ 1.38
VPS35-202ENST00000561713 SLC5A1P13866 664 aa23.69■■□□□ 1.38
VPS35-202ENST00000561713 SLC4A8Q2Y0W8 1093 aa23.69■■□□□ 1.38
VPS35-202ENST00000561713 APOBEC3HQ6NTF7 200 aaKnown RBP23.69■■□□□ 1.38
VPS35-202ENST00000561713 MYH2Q9UKX2 1941 aa23.69■■□□□ 1.38
VPS35-202ENST00000561713 ZSWIM8A7E2V4 1837 aa23.68■■□□□ 1.38
VPS35-202ENST00000561713 FAM83AQ86UY5 434 aa23.68■■□□□ 1.38
VPS35-202ENST00000561713 SH3TC2Q8TF17 1288 aa23.68■■□□□ 1.38
VPS35-202ENST00000561713 MRIQ9BWK5 157 aa23.68■■□□□ 1.38
VPS35-202ENST00000561713 TMOD2Q9NZR1 351 aa23.68■■□□□ 1.38
VPS35-202ENST00000561713 KIF16BQ96L93 1317 aa23.67■■□□□ 1.38
VPS35-202ENST00000561713 WDHD1O75717 1129 aaPredicted RBP23.67■■□□□ 1.38
VPS35-202ENST00000561713 LACTBP83111 547 aaPredicted RBP23.67■■□□□ 1.38
VPS35-202ENST00000561713 SNAPC2Q13487 334 aa23.67■■□□□ 1.38
VPS35-202ENST00000561713 ATP2B3Q16720 1220 aa23.67■■□□□ 1.38
VPS35-202ENST00000561713 PPIL2Q13356 520 aa23.66■■□□□ 1.38
VPS35-202ENST00000561713 FKBP1CQ5VVH2 108 aa23.66■■□□□ 1.38
VPS35-202ENST00000561713 MIGA2Q7L4E1 593 aa23.66■■□□□ 1.38
VPS35-202ENST00000561713 LPIN2Q92539 896 aa23.66■■□□□ 1.38
VPS35-202ENST00000561713 DOCK2Q92608 1830 aa23.66■■□□□ 1.38
VPS35-202ENST00000561713 ECM2O94769 699 aaPredicted RBP23.65■■□□□ 1.38
VPS35-202ENST00000561713 FXR1P51114 621 aaKnown RBP eCLIP23.65■■□□□ 1.38
VPS35-202ENST00000561713 KIF22Q14807 665 aa23.65■■□□□ 1.38
VPS35-202ENST00000561713 HOOK2Q96ED9 719 aa23.65■■□□□ 1.38
VPS35-202ENST00000561713 ZCCHC17Q9NP64 241 aaKnown RBP23.65■■□□□ 1.38
VPS35-202ENST00000561713 ADORA1P30542 326 aa23.64■■□□□ 1.37
VPS35-202ENST00000561713 HHIPL2Q6UWX4 724 aa23.64■■□□□ 1.37
VPS35-202ENST00000561713 COLQQ9Y215 455 aaPredicted RBP23.64■■□□□ 1.37
VPS35-202ENST00000561713 SUGT1Q9Y2Z0 365 aa23.64■■□□□ 1.37
VPS35-202ENST00000561713 MAST3O60307 1309 aa23.63■■□□□ 1.37
VPS35-202ENST00000561713 SZT2Q5T011 3432 aa23.63■■□□□ 1.37
VPS35-202ENST00000561713 CIAO1O76071 339 aa23.63■■□□□ 1.37
VPS35-202ENST00000561713 INPP5BP32019 993 aa23.63■■□□□ 1.37
VPS35-202ENST00000561713 DCAF15Q66K64 600 aa23.63■■□□□ 1.37
VPS35-202ENST00000561713 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.63■■□□□ 1.37
VPS35-202ENST00000561713 BCAR3O75815 825 aa23.62■■□□□ 1.37
VPS35-202ENST00000561713 CTGFP29279 349 aa23.62■■□□□ 1.37
VPS35-202ENST00000561713 PHKA1P46020 1223 aa23.62■■□□□ 1.37
VPS35-202ENST00000561713 PPATQ06203 517 aa23.62■■□□□ 1.37
VPS35-202ENST00000561713 DIXDC1Q155Q3 683 aa23.62■■□□□ 1.37
VPS35-202ENST00000561713 C17orf99Q6UX52 265 aa23.62■■□□□ 1.37
VPS35-202ENST00000561713 ZNF341Q9BYN7 854 aa23.62■■□□□ 1.37
VPS35-202ENST00000561713 CEP126Q9P2H0 1117 aa23.62■■□□□ 1.37
VPS35-202ENST00000561713 CPA4Q9UI42 421 aa23.62■■□□□ 1.37
VPS35-202ENST00000561713 RPAP1Q9BWH6 1393 aaPredicted RBP23.62■■□□□ 1.37
VPS35-202ENST00000561713 GNRH1P01148 92 aa23.61■■□□□ 1.37
VPS35-202ENST00000561713 TRIM27P14373 513 aa23.61■■□□□ 1.37
VPS35-202ENST00000561713 PRDX5P30044 214 aa23.61■■□□□ 1.37
VPS35-202ENST00000561713 FRAT1Q92837 279 aaPredicted RBP23.61■■□□□ 1.37
VPS35-202ENST00000561713 CLUAP1Q96AJ1 413 aa23.6■■□□□ 1.37
VPS35-202ENST00000561713 H0YGN5 161 aa23.59■■□□□ 1.37
VPS35-202ENST00000561713 IL15P40933 162 aaPredicted RBP23.59■■□□□ 1.37
VPS35-202ENST00000561713 TCP10Q12799 353 aa23.59■■□□□ 1.37
VPS35-202ENST00000561713 WDR66Q8TBY9 1149 aa23.59■■□□□ 1.37
VPS35-202ENST00000561713 FAM151AQ8WW52 585 aa23.59■■□□□ 1.37
VPS35-202ENST00000561713 TRIM47Q96LD4 638 aa23.59■■□□□ 1.37
VPS35-202ENST00000561713 DAGLAQ9Y4D2 1042 aa23.59■■□□□ 1.37
VPS35-202ENST00000561713 CEP290O15078 2479 aa23.59■■□□□ 1.37
VPS35-202ENST00000561713 RANBP2P49792 3224 aaKnown RBP23.58■■□□□ 1.37
VPS35-202ENST00000561713 PDHXO00330 501 aa23.58■■□□□ 1.37
VPS35-202ENST00000561713 SRGAP3O43295 1099 aa23.58■■□□□ 1.37
VPS35-202ENST00000561713 PSMC4P43686 418 aa23.58■■□□□ 1.37
VPS35-202ENST00000561713 PRMT2P55345 433 aa23.58■■□□□ 1.37
VPS35-202ENST00000561713 MTFR1Q15390 333 aa23.58■■□□□ 1.37
VPS35-202ENST00000561713 CDC42EP5Q6NZY7 148 aa23.58■■□□□ 1.37
VPS35-202ENST00000561713 ANKRD23Q86SG2 305 aa23.58■■□□□ 1.37
VPS35-202ENST00000561713 COPRSQ9NQ92 184 aa23.58■■□□□ 1.37
VPS35-202ENST00000561713 ZNF112Q9UJU3 913 aa23.58■■□□□ 1.37
VPS35-202ENST00000561713 FBXO3Q9UK99 471 aa23.58■■□□□ 1.37
VPS35-202ENST00000561713 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.58■■□□□ 1.37
VPS35-202ENST00000561713 NFIAQ12857 509 aa23.57■■□□□ 1.36
VPS35-202ENST00000561713 MOGSQ13724 837 aa23.57■■□□□ 1.36
VPS35-202ENST00000561713 MIER1Q8N108 512 aa23.57■■□□□ 1.36
VPS35-202ENST00000561713 ARHGAP45Q92619 1136 aa23.57■■□□□ 1.36
VPS35-202ENST00000561713 SRRDQ9UH36 339 aa23.57■■□□□ 1.36
VPS35-202ENST00000561713 KCNH4Q9UQ05 1017 aa23.57■■□□□ 1.36
VPS35-202ENST00000561713 HNRNPUQ00839 825 aaKnown RBP eCLIP23.56■■□□□ 1.36
VPS35-202ENST00000561713 ATF7IPQ6VMQ6 1270 aa23.56■■□□□ 1.36
VPS35-202ENST00000561713 SHISA4Q96DD7 197 aa23.56■■□□□ 1.36
VPS35-202ENST00000561713 ADGRA2Q96PE1 1338 aa23.56■■□□□ 1.36
VPS35-202ENST00000561713 GNAI3P08754 354 aa23.55■■□□□ 1.36
VPS35-202ENST00000561713 OSBPP22059 807 aa23.55■■□□□ 1.36
VPS35-202ENST00000561713 TFCP2Q12800 502 aa23.55■■□□□ 1.36
VPS35-202ENST00000561713 CCDC102BQ68D86 513 aa23.55■■□□□ 1.36
VPS35-202ENST00000561713 GNL3LQ9NVN8 582 aaKnown RBP23.55■■□□□ 1.36
VPS35-202ENST00000561713 FMNL1O95466 1100 aaPredicted RBP23.54■■□□□ 1.36
VPS35-202ENST00000561713 LDHBP07195 334 aaKnown RBP23.54■■□□□ 1.36
VPS35-202ENST00000561713 RASGRF1Q13972 1273 aa23.54■■□□□ 1.36
VPS35-202ENST00000561713 FAM198AQ9UFP1 575 aa23.54■■□□□ 1.36
VPS35-202ENST00000561713 HDAC5Q9UQL6 1122 aa23.54■■□□□ 1.36
VPS35-202ENST00000561713 MYO5AQ9Y4I1 1855 aaKnown RBP23.53■■□□□ 1.36
VPS35-202ENST00000561713 A0A1B0GUL7 405 aa23.53■■□□□ 1.36
VPS35-202ENST00000561713 TIMM10P62072 90 aa23.53■■□□□ 1.36
VPS35-202ENST00000561713 ZFPM1Q8IX07 1006 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms