RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ZKSCAN4Q969J2 545 aaPredicted RBP12.67□□□□□ -0.38
LDLR-214ENST00000560628 OTUD5Q96G74 571 aa12.67□□□□□ -0.38
LDLR-214ENST00000560628 CFHR5Q9BXR6 569 aa12.67□□□□□ -0.38
LDLR-214ENST00000560628 USP40Q9NVE5 1235 aa12.67□□□□□ -0.38
LDLR-214ENST00000560628 ABCF2Q9UG63 623 aa12.67□□□□□ -0.38
LDLR-214ENST00000560628 HPS5Q9UPZ3 1129 aa12.67□□□□□ -0.38
LDLR-214ENST00000560628 AKAP2Q9Y2D5 859 aa12.67□□□□□ -0.38
LDLR-214ENST00000560628 TESPA1A2RU30 521 aaPredicted RBP12.66□□□□□ -0.38
LDLR-214ENST00000560628 SEMA3EO15041 775 aa12.66□□□□□ -0.38
LDLR-214ENST00000560628 NFIAQ12857 509 aa12.66□□□□□ -0.38
LDLR-214ENST00000560628 CRHR2Q13324 411 aa12.66□□□□□ -0.38
LDLR-214ENST00000560628 RASGRF1Q13972 1273 aa12.66□□□□□ -0.38
LDLR-214ENST00000560628 PKN2Q16513 984 aaKnown RBP12.66□□□□□ -0.38
LDLR-214ENST00000560628 FAM151AQ8WW52 585 aa12.66□□□□□ -0.38
LDLR-214ENST00000560628 MS4A4AQ96JQ5 239 aa12.66□□□□□ -0.38
LDLR-214ENST00000560628 WRNIP1Q96S55 665 aa12.66□□□□□ -0.38
LDLR-214ENST00000560628 G3BP1Q13283 466 aaKnown RBP eCLIP12.65□□□□□ -0.38
LDLR-214ENST00000560628 GORABQ5T7V8 394 aa12.65□□□□□ -0.38
LDLR-214ENST00000560628 ZFPM1Q8IX07 1006 aa12.65□□□□□ -0.38
LDLR-214ENST00000560628 BRI3BPQ8WY22 251 aa12.65□□□□□ -0.38
LDLR-214ENST00000560628 HOOK2Q96ED9 719 aa12.65□□□□□ -0.38
LDLR-214ENST00000560628 SALL1Q9NSC2 1324 aa12.64□□□□□ -0.39
LDLR-214ENST00000560628 CCL15-CCL14A0A0B4J2E2 113 aa12.64□□□□□ -0.39
LDLR-214ENST00000560628 INPP5BP32019 993 aa12.64□□□□□ -0.39
LDLR-214ENST00000560628 GTF2A2P52657 109 aa12.64□□□□□ -0.39
LDLR-214ENST00000560628 MVPQ14764 893 aaKnown RBP12.64□□□□□ -0.39
LDLR-214ENST00000560628 CCL15Q16663 113 aa12.64□□□□□ -0.39
LDLR-214ENST00000560628 DCAF15Q66K64 600 aa12.64□□□□□ -0.39
LDLR-214ENST00000560628 DZIP1Q86YF9 867 aaKnown RBP12.64□□□□□ -0.39
LDLR-214ENST00000560628 ZGPATQ8N5A5 531 aaKnown RBP12.64□□□□□ -0.39
LDLR-214ENST00000560628 ZNF341Q9BYN7 854 aa12.64□□□□□ -0.39
LDLR-214ENST00000560628 C1orf115Q9H7X2 142 aa12.64□□□□□ -0.39
LDLR-214ENST00000560628 FAM198AQ9UFP1 575 aa12.64□□□□□ -0.39
LDLR-214ENST00000560628 TRIM17Q9Y577 477 aa12.64□□□□□ -0.39
LDLR-214ENST00000560628 SNCAIPQ9Y6H5 919 aa12.64□□□□□ -0.39
LDLR-214ENST00000560628 ARAP2Q8WZ64 1704 aa12.64□□□□□ -0.39
LDLR-214ENST00000560628 SPDYE5A6NIY4 337 aa12.63□□□□□ -0.39
LDLR-214ENST00000560628 FBXO46Q6PJ61 603 aaPredicted RBP12.63□□□□□ -0.39
LDLR-214ENST00000560628 TBC1D9Q6ZT07 1266 aa12.63□□□□□ -0.39
LDLR-214ENST00000560628 ERO1BQ86YB8 467 aa12.63□□□□□ -0.39
LDLR-214ENST00000560628 CD99L2Q8TCZ2 262 aa12.63□□□□□ -0.39
LDLR-214ENST00000560628 IRF6O14896 467 aa12.62□□□□□ -0.39
LDLR-214ENST00000560628 RLBP1P12271 317 aa12.62□□□□□ -0.39
LDLR-214ENST00000560628 ATP8B2P98198 1209 aa12.62□□□□□ -0.39
LDLR-214ENST00000560628 TAF1CQ15572 869 aaPredicted RBP12.62□□□□□ -0.39
LDLR-214ENST00000560628 SPTY2D1Q68D10 685 aaPredicted RBP12.62□□□□□ -0.39
LDLR-214ENST00000560628 PI16Q6UXB8 463 aa12.62□□□□□ -0.39
LDLR-214ENST00000560628 ERICH6Q7L0X2 663 aa12.62□□□□□ -0.39
LDLR-214ENST00000560628 OTOP1Q7RTM1 612 aa12.62□□□□□ -0.39
LDLR-214ENST00000560628 ITPRIPQ8IWB1 547 aa12.62□□□□□ -0.39
LDLR-214ENST00000560628 FTSJ3Q8IY81 847 aaKnown RBP12.62□□□□□ -0.39
LDLR-214ENST00000560628 FAM43AQ8N2R8 423 aa12.62□□□□□ -0.39
LDLR-214ENST00000560628 HMG20BQ9P0W2 317 aa12.62□□□□□ -0.39
LDLR-214ENST00000560628 ZBTB22O15209 634 aa12.61□□□□□ -0.39
LDLR-214ENST00000560628 CETPP11597 493 aa12.61□□□□□ -0.39
LDLR-214ENST00000560628 BTDP43251 543 aa12.61□□□□□ -0.39
LDLR-214ENST00000560628 RGS3P49796 1198 aa12.61□□□□□ -0.39
LDLR-214ENST00000560628 CAP1Q01518 475 aa12.61□□□□□ -0.39
LDLR-214ENST00000560628 SP3Q02447 781 aa12.61□□□□□ -0.39
LDLR-214ENST00000560628 MECOMQ03112 1051 aa12.61□□□□□ -0.39
LDLR-214ENST00000560628 OS9Q13438 667 aaPredicted RBP12.61□□□□□ -0.39
LDLR-214ENST00000560628 ZSCAN29Q8IWY8 852 aaPredicted RBP12.61□□□□□ -0.39
LDLR-214ENST00000560628 SLF2Q8IX21 1173 aa12.61□□□□□ -0.39
LDLR-214ENST00000560628 SPATA5Q8NB90 893 aa12.61□□□□□ -0.39
LDLR-214ENST00000560628 ERO1AQ96HE7 468 aa12.61□□□□□ -0.39
LDLR-214ENST00000560628 ZFYVE28Q9HCC9 887 aa12.61□□□□□ -0.39
LDLR-214ENST00000560628 ZNF112Q9UJU3 913 aa12.61□□□□□ -0.39
LDLR-214ENST00000560628 GAKO14976 1311 aa12.61□□□□□ -0.39
LDLR-214ENST00000560628 BTBD19C9JJ37 291 aa12.6□□□□□ -0.39
LDLR-214ENST00000560628 ZBTB7BO15156 539 aaPredicted RBP12.6□□□□□ -0.39
LDLR-214ENST00000560628 SURF6O75683 361 aaKnown RBP12.6□□□□□ -0.39
LDLR-214ENST00000560628 SLURP2P0DP57 97 aa12.6□□□□□ -0.39
LDLR-214ENST00000560628 PPIL2Q13356 520 aa12.6□□□□□ -0.39
LDLR-214ENST00000560628 SNAPC2Q13487 334 aa12.6□□□□□ -0.39
LDLR-214ENST00000560628 PICALMQ13492 652 aa12.6□□□□□ -0.39
LDLR-214ENST00000560628 POLA2Q14181 598 aa12.6□□□□□ -0.39
LDLR-214ENST00000560628 SH3BP5LQ7L8J4 393 aa12.6□□□□□ -0.39
LDLR-214ENST00000560628 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.6□□□□□ -0.39
LDLR-214ENST00000560628 SSH3Q8TE77 659 aa12.6□□□□□ -0.39
LDLR-214ENST00000560628 ZNF384Q8TF68 577 aa12.6□□□□□ -0.39
LDLR-214ENST00000560628 FAM163AQ96GL9 167 aaPredicted RBP12.6□□□□□ -0.39
LDLR-214ENST00000560628 IDI2Q9BXS1 227 aa12.6□□□□□ -0.39
LDLR-214ENST00000560628 EFCC1Q9HA90 598 aa12.6□□□□□ -0.39
LDLR-214ENST00000560628 SNRKQ9NRH2 765 aa12.6□□□□□ -0.39
LDLR-214ENST00000560628 PDS5AQ29RF7 1337 aaKnown RBP12.6□□□□□ -0.39
LDLR-214ENST00000560628 OTOFQ9HC10 1997 aa12.6□□□□□ -0.39
LDLR-214ENST00000560628 RPAP1Q9BWH6 1393 aaPredicted RBP12.59□□□□□ -0.39
LDLR-214ENST00000560628 DDTLA6NHG4 134 aaPredicted RBP12.59□□□□□ -0.39
LDLR-214ENST00000560628 ENTPD3O75355 529 aa12.59□□□□□ -0.39
LDLR-214ENST00000560628 WDHD1O75717 1129 aaPredicted RBP12.59□□□□□ -0.39
LDLR-214ENST00000560628 PPATQ06203 517 aa12.59□□□□□ -0.39
LDLR-214ENST00000560628 PANK1Q8TE04 598 aa12.59□□□□□ -0.39
LDLR-214ENST00000560628 DBNDD2Q9BQY9 259 aa12.59□□□□□ -0.39
LDLR-214ENST00000560628 DDX4Q9NQI0 724 aaKnown RBP12.59□□□□□ -0.39
LDLR-214ENST00000560628 RAI14Q9P0K7 980 aa12.59□□□□□ -0.39
LDLR-214ENST00000560628 MROH7-TTC4A0A0A0MT08 1334 aa12.59□□□□□ -0.39
LDLR-214ENST00000560628 MYH13Q9UKX3 1938 aa12.58□□□□□ -0.39
LDLR-214ENST00000560628 GPR75-ASB3A0A0A6YYF3 556 aa12.58□□□□□ -0.4
LDLR-214ENST00000560628 ECM2O94769 699 aaPredicted RBP12.58□□□□□ -0.4
LDLR-214ENST00000560628 LDHCP07864 332 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms