RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 VAMP4O75379 141 aa22.48■■□□□ 1.19
TSPAN3-208ENST00000560514 GRIK5Q16478 980 aa22.48■■□□□ 1.19
TSPAN3-208ENST00000560514 FKBP1CQ5VVH2 108 aa22.48■■□□□ 1.19
TSPAN3-208ENST00000560514 MIGA2Q7L4E1 593 aa22.48■■□□□ 1.19
TSPAN3-208ENST00000560514 FANCIQ9NVI1 1328 aa22.48■■□□□ 1.19
TSPAN3-208ENST00000560514 DLL1O00548 723 aa22.47■■□□□ 1.19
TSPAN3-208ENST00000560514 FBXO33Q7Z6M2 555 aa22.47■■□□□ 1.19
TSPAN3-208ENST00000560514 MRIQ9BWK5 157 aa22.47■■□□□ 1.19
TSPAN3-208ENST00000560514 PUS3Q9BZE2 481 aaKnown RBP22.47■■□□□ 1.19
TSPAN3-208ENST00000560514 CTGFP29279 349 aa22.46■■□□□ 1.19
TSPAN3-208ENST00000560514 FCGRTP55899 365 aa22.46■■□□□ 1.19
TSPAN3-208ENST00000560514 METTL24Q5JXM2 366 aa22.46■■□□□ 1.19
TSPAN3-208ENST00000560514 SLC4A10Q6U841 1118 aa22.46■■□□□ 1.19
TSPAN3-208ENST00000560514 ALDH1L1O75891 902 aa22.45■■□□□ 1.18
TSPAN3-208ENST00000560514 FARP2O94887 1054 aaPredicted RBP22.45■■□□□ 1.18
TSPAN3-208ENST00000560514 PARK7Q99497 189 aaKnown RBP22.45■■□□□ 1.18
TSPAN3-208ENST00000560514 SUGT1Q9Y2Z0 365 aa22.45■■□□□ 1.18
TSPAN3-208ENST00000560514 RPAP1Q9BWH6 1393 aaPredicted RBP22.45■■□□□ 1.18
TSPAN3-208ENST00000560514 INPP5BP32019 993 aa22.44■■□□□ 1.18
TSPAN3-208ENST00000560514 EXOSC9Q06265 439 aaKnown RBP22.44■■□□□ 1.18
TSPAN3-208ENST00000560514 SLAIN1Q8ND83 568 aa22.44■■□□□ 1.18
TSPAN3-208ENST00000560514 SRCIN1Q9C0H9 1055 aa22.44■■□□□ 1.18
TSPAN3-208ENST00000560514 PRKCZQ05513 592 aa22.43■■□□□ 1.18
TSPAN3-208ENST00000560514 APOBEC3HQ6NTF7 200 aaKnown RBP22.43■■□□□ 1.18
TSPAN3-208ENST00000560514 HHIPL2Q6UWX4 724 aa22.43■■□□□ 1.18
TSPAN3-208ENST00000560514 U2AF1L4Q8WU68 220 aaKnown RBP22.43■■□□□ 1.18
TSPAN3-208ENST00000560514 KCNH4Q9UQ05 1017 aa22.43■■□□□ 1.18
TSPAN3-208ENST00000560514 RANBP2P49792 3224 aaKnown RBP22.42■■□□□ 1.18
TSPAN3-208ENST00000560514 ZBTB7BO15156 539 aaPredicted RBP22.42■■□□□ 1.18
TSPAN3-208ENST00000560514 EVI5O60447 810 aa22.42■■□□□ 1.18
TSPAN3-208ENST00000560514 UBE2Q1Q7Z7E8 422 aa22.42■■□□□ 1.18
TSPAN3-208ENST00000560514 FAM151AQ8WW52 585 aa22.42■■□□□ 1.18
TSPAN3-208ENST00000560514 SUCLG2Q96I99 432 aa22.42■■□□□ 1.18
TSPAN3-208ENST00000560514 MGAMO43451 1857 aa22.42■■□□□ 1.18
TSPAN3-208ENST00000560514 ADGRA2Q96PE1 1338 aa22.41■■□□□ 1.18
TSPAN3-208ENST00000560514 A0A1W2PPC1 479 aa22.41■■□□□ 1.18
TSPAN3-208ENST00000560514 ZEB1P37275 1124 aaPredicted RBP22.41■■□□□ 1.18
TSPAN3-208ENST00000560514 PDE8BO95263 885 aa22.4■■□□□ 1.18
TSPAN3-208ENST00000560514 SGPL1O95470 568 aa22.4■■□□□ 1.18
TSPAN3-208ENST00000560514 BCAMP50895 628 aa22.4■■□□□ 1.18
TSPAN3-208ENST00000560514 TCP10Q12799 353 aa22.4■■□□□ 1.18
TSPAN3-208ENST00000560514 NCBP3Q53F19 620 aaKnown RBP22.4■■□□□ 1.18
TSPAN3-208ENST00000560514 PRO3102Q9H379 93 aa22.4■■□□□ 1.18
TSPAN3-208ENST00000560514 TFRCP02786 760 aaKnown RBP22.39■■□□□ 1.17
TSPAN3-208ENST00000560514 IFIT1P09914 478 aaKnown RBP22.39■■□□□ 1.17
TSPAN3-208ENST00000560514 CAPN2P17655 700 aa22.39■■□□□ 1.17
TSPAN3-208ENST00000560514 LRRC24Q50LG9 513 aa22.39■■□□□ 1.17
TSPAN3-208ENST00000560514 WDR63Q8IWG1 891 aa22.39■■□□□ 1.17
TSPAN3-208ENST00000560514 UNC93B1Q9H1C4 597 aa22.39■■□□□ 1.17
TSPAN3-208ENST00000560514 ZNF112Q9UJU3 913 aa22.39■■□□□ 1.17
TSPAN3-208ENST00000560514 SALL2Q9Y467 1007 aaPredicted RBP22.39■■□□□ 1.17
TSPAN3-208ENST00000560514 MYH13Q9UKX3 1938 aa22.39■■□□□ 1.17
TSPAN3-208ENST00000560514 ADCY3O60266 1144 aa22.38■■□□□ 1.17
TSPAN3-208ENST00000560514 CYP2C8P10632 490 aa22.38■■□□□ 1.17
TSPAN3-208ENST00000560514 CXCL11O14625 94 aa22.37■■□□□ 1.17
TSPAN3-208ENST00000560514 NBPF7P0C2Y1 421 aaPredicted RBP22.37■■□□□ 1.17
TSPAN3-208ENST00000560514 BCRP11274 1271 aa22.37■■□□□ 1.17
TSPAN3-208ENST00000560514 NOL9Q5SY16 702 aaKnown RBP22.37■■□□□ 1.17
TSPAN3-208ENST00000560514 FASTKD5Q7L8L6 764 aaKnown RBP22.37■■□□□ 1.17
TSPAN3-208ENST00000560514 WDR66Q8TBY9 1149 aa22.37■■□□□ 1.17
TSPAN3-208ENST00000560514 BICC1Q9H694 974 aaKnown RBP22.37■■□□□ 1.17
TSPAN3-208ENST00000560514 GABRQQ9UN88 632 aa22.37■■□□□ 1.17
TSPAN3-208ENST00000560514 PUM3Q15397 648 aaKnown RBP22.36■■□□□ 1.17
TSPAN3-208ENST00000560514 KAZALD1Q96I82 304 aa22.36■■□□□ 1.17
TSPAN3-208ENST00000560514 PICK1Q9NRD5 415 aa22.36■■□□□ 1.17
TSPAN3-208ENST00000560514 FLT3LGP49771 235 aa22.35■■□□□ 1.17
TSPAN3-208ENST00000560514 MOGSQ13724 837 aa22.35■■□□□ 1.17
TSPAN3-208ENST00000560514 KIF16BQ96L93 1317 aa22.34■■□□□ 1.17
TSPAN3-208ENST00000560514 TNPO2O14787 897 aaKnown RBP22.34■■□□□ 1.17
TSPAN3-208ENST00000560514 INHAP05111 366 aa22.34■■□□□ 1.17
TSPAN3-208ENST00000560514 RABL6Q3YEC7 729 aaPredicted RBP22.34■■□□□ 1.17
TSPAN3-208ENST00000560514 CDC42EP5Q6NZY7 148 aa22.34■■□□□ 1.17
TSPAN3-208ENST00000560514 VGLL2Q8N8G2 317 aa22.34■■□□□ 1.17
TSPAN3-208ENST00000560514 PXYLP1Q8TE99 480 aa22.34■■□□□ 1.17
TSPAN3-208ENST00000560514 DEFB118Q96PH6 123 aa22.34■■□□□ 1.17
TSPAN3-208ENST00000560514 STAP2Q9UGK3 403 aa22.34■■□□□ 1.17
TSPAN3-208ENST00000560514 TAOK2Q9UL54 1235 aa22.34■■□□□ 1.17
TSPAN3-208ENST00000560514 SLC5A1P13866 664 aa22.33■■□□□ 1.17
TSPAN3-208ENST00000560514 ELNP15502 786 aa22.33■■□□□ 1.17
TSPAN3-208ENST00000560514 GPAT2Q6NUI2 795 aa22.33■■□□□ 1.17
TSPAN3-208ENST00000560514 GADL1Q6ZQY3 521 aa22.33■■□□□ 1.17
TSPAN3-208ENST00000560514 SMCR8Q8TEV9 937 aaPredicted RBP22.33■■□□□ 1.17
TSPAN3-208ENST00000560514 DAGLAQ9Y4D2 1042 aa22.33■■□□□ 1.17
TSPAN3-208ENST00000560514 ZHX2Q9Y6X8 837 aa22.33■■□□□ 1.17
TSPAN3-208ENST00000560514 NFIAQ12857 509 aa22.32■■□□□ 1.16
TSPAN3-208ENST00000560514 CCDC184Q52MB2 194 aa22.32■■□□□ 1.16
TSPAN3-208ENST00000560514 SCYL3Q8IZE3 742 aa22.32■■□□□ 1.16
TSPAN3-208ENST00000560514 LRCH3Q96II8 777 aa22.32■■□□□ 1.16
TSPAN3-208ENST00000560514 SPINK5Q9NQ38 1064 aaPredicted RBP22.32■■□□□ 1.16
TSPAN3-208ENST00000560514 USP40Q9NVE5 1235 aa22.32■■□□□ 1.16
TSPAN3-208ENST00000560514 UTYO14607 1347 aa22.31■■□□□ 1.16
TSPAN3-208ENST00000560514 SOX1O00570 391 aaPredicted RBP22.31■■□□□ 1.16
TSPAN3-208ENST00000560514 IRF5Q13568 498 aa22.31■■□□□ 1.16
TSPAN3-208ENST00000560514 DIXDC1Q155Q3 683 aa22.31■■□□□ 1.16
TSPAN3-208ENST00000560514 KLHDC4Q8TBB5 520 aa22.31■■□□□ 1.16
TSPAN3-208ENST00000560514 COA7Q96BR5 231 aa22.31■■□□□ 1.16
TSPAN3-208ENST00000560514 A0A0G2JLL6 359 aaPredicted RBP22.3■■□□□ 1.16
TSPAN3-208ENST00000560514 LDHBP07195 334 aaKnown RBP22.3■■□□□ 1.16
TSPAN3-208ENST00000560514 NECAB2Q7Z6G3 386 aa22.3■■□□□ 1.16
TSPAN3-208ENST00000560514 PRRT2Q7Z6L0 340 aaPredicted RBP22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms