RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 TMOD2Q9NZR1 351 aa13.49□□□□□ -0.25
SPG11-216ENST00000559347 HMG20BQ9P0W2 317 aa13.49□□□□□ -0.25
SPG11-216ENST00000559347 TSKSQ9UJT2 592 aa13.49□□□□□ -0.25
SPG11-216ENST00000559347 GAKO14976 1311 aa13.48□□□□□ -0.25
SPG11-216ENST00000559347 PPP1R12BO60237 982 aaPredicted RBP13.48□□□□□ -0.25
SPG11-216ENST00000559347 MCAMP43121 646 aa13.48□□□□□ -0.25
SPG11-216ENST00000559347 PDE3AQ14432 1141 aa13.48□□□□□ -0.25
SPG11-216ENST00000559347 GORABQ5T7V8 394 aa13.48□□□□□ -0.25
SPG11-216ENST00000559347 FKBP1CQ5VVH2 108 aa13.48□□□□□ -0.25
SPG11-216ENST00000559347 FAM83AQ86UY5 434 aa13.48□□□□□ -0.25
SPG11-216ENST00000559347 ZBTB40Q9NUA8 1239 aa13.48□□□□□ -0.25
SPG11-216ENST00000559347 ABCF2Q9UG63 623 aa13.48□□□□□ -0.25
SPG11-216ENST00000559347 DOCK1Q14185 1865 aa13.47□□□□□ -0.25
SPG11-216ENST00000559347 IFFO2Q5TF58 517 aa13.47□□□□□ -0.25
SPG11-216ENST00000559347 DZIP1Q86YF9 867 aaKnown RBP13.47□□□□□ -0.25
SPG11-216ENST00000559347 TNS4Q8IZW8 715 aa13.47□□□□□ -0.25
SPG11-216ENST00000559347 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.47□□□□□ -0.25
SPG11-216ENST00000559347 SPATA5Q8NB90 893 aa13.47□□□□□ -0.25
SPG11-216ENST00000559347 CLMNQ96JQ2 1002 aa13.47□□□□□ -0.25
SPG11-216ENST00000559347 CSRNP1Q96S65 589 aa13.47□□□□□ -0.25
SPG11-216ENST00000559347 DBNDD2Q9BQY9 259 aa13.47□□□□□ -0.25
SPG11-216ENST00000559347 SAGE1Q9NXZ1 904 aa13.47□□□□□ -0.25
SPG11-216ENST00000559347 TLR7Q9NYK1 1049 aaKnown RBP13.47□□□□□ -0.25
SPG11-216ENST00000559347 EXOC6BQ9Y2D4 811 aa13.47□□□□□ -0.25
SPG11-216ENST00000559347 SIPA1L1O43166 1804 aa13.47□□□□□ -0.25
SPG11-216ENST00000559347 ATAD5Q96QE3 1844 aa13.47□□□□□ -0.25
SPG11-216ENST00000559347 MROH7-TTC4A0A0A0MT08 1334 aa13.46□□□□□ -0.25
SPG11-216ENST00000559347 UNCXA6NJT0 531 aa13.46□□□□□ -0.25
SPG11-216ENST00000559347 USP2O75604 605 aaPredicted RBP13.46□□□□□ -0.25
SPG11-216ENST00000559347 UQCRFS1P1P0C7P4 283 aa13.46□□□□□ -0.25
SPG11-216ENST00000559347 IREB2P48200 963 aaKnown RBP13.46□□□□□ -0.25
SPG11-216ENST00000559347 SPTY2D1Q68D10 685 aaPredicted RBP13.46□□□□□ -0.25
SPG11-216ENST00000559347 CDC42EP5Q6NZY7 148 aa13.46□□□□□ -0.25
SPG11-216ENST00000559347 REM2Q8IYK8 340 aaPredicted RBP13.46□□□□□ -0.25
SPG11-216ENST00000559347 ZNF384Q8TF68 577 aa13.46□□□□□ -0.25
SPG11-216ENST00000559347 DBNLQ9UJU6 430 aaKnown RBP13.46□□□□□ -0.25
SPG11-216ENST00000559347 MYH7P12883 1935 aa13.46□□□□□ -0.25
SPG11-216ENST00000559347 MECOMQ03112 1051 aa13.45□□□□□ -0.26
SPG11-216ENST00000559347 NFIAQ12857 509 aa13.45□□□□□ -0.26
SPG11-216ENST00000559347 MKRN3Q13064 507 aaKnown RBP13.45□□□□□ -0.26
SPG11-216ENST00000559347 TTC39AQ5SRH9 613 aa13.45□□□□□ -0.26
SPG11-216ENST00000559347 SPRYD7Q5W111 196 aa13.45□□□□□ -0.26
SPG11-216ENST00000559347 ERICH6Q7L0X2 663 aa13.45□□□□□ -0.26
SPG11-216ENST00000559347 ERC1Q8IUD2 1116 aa13.45□□□□□ -0.26
SPG11-216ENST00000559347 SIRT2Q8IXJ6 389 aa13.45□□□□□ -0.26
SPG11-216ENST00000559347 RPAP2Q8IXW5 612 aaPredicted RBP13.45□□□□□ -0.26
SPG11-216ENST00000559347 ANKRD13AQ8IZ07 590 aa13.45□□□□□ -0.26
SPG11-216ENST00000559347 EAF2Q96CJ1 260 aaPredicted RBP13.45□□□□□ -0.26
SPG11-216ENST00000559347 WNK4Q96J92 1243 aa13.45□□□□□ -0.26
SPG11-216ENST00000559347 CHMP4BQ9H444 224 aaKnown RBP13.45□□□□□ -0.26
SPG11-216ENST00000559347 PTPRFP10586 1907 aa13.45□□□□□ -0.26
SPG11-216ENST00000559347 DDX60LQ5H9U9 1706 aaKnown RBP13.44□□□□□ -0.26
SPG11-216ENST00000559347 PHIPQ8WWQ0 1821 aa13.44□□□□□ -0.26
SPG11-216ENST00000559347 HMMRO75330 724 aa13.44□□□□□ -0.26
SPG11-216ENST00000559347 ZBTB48P10074 688 aaPredicted RBP13.44□□□□□ -0.26
SPG11-216ENST00000559347 CCDC158Q5M9N0 1113 aa13.44□□□□□ -0.26
SPG11-216ENST00000559347 SLF2Q8IX21 1173 aa13.44□□□□□ -0.26
SPG11-216ENST00000559347 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.44□□□□□ -0.26
SPG11-216ENST00000559347 FAM151AQ8WW52 585 aa13.44□□□□□ -0.26
SPG11-216ENST00000559347 NSUN4Q96CB9 384 aaKnown RBP13.44□□□□□ -0.26
SPG11-216ENST00000559347 FAM163AQ96GL9 167 aaPredicted RBP13.44□□□□□ -0.26
SPG11-216ENST00000559347 ZNF512BQ96KM6 892 aaPredicted RBP13.44□□□□□ -0.26
SPG11-216ENST00000559347 RNF186Q9NXI6 227 aa13.44□□□□□ -0.26
SPG11-216ENST00000559347 FAM198AQ9UFP1 575 aa13.44□□□□□ -0.26
SPG11-216ENST00000559347 ATRNL1Q5VV63 1379 aa13.44□□□□□ -0.26
SPG11-216ENST00000559347 COL2A1P02458 1487 aaPredicted RBP13.43□□□□□ -0.26
SPG11-216ENST00000559347 TRPA1O75762 1119 aa13.43□□□□□ -0.26
SPG11-216ENST00000559347 GJA5P36382 358 aa13.43□□□□□ -0.26
SPG11-216ENST00000559347 BTDP43251 543 aa13.43□□□□□ -0.26
SPG11-216ENST00000559347 SREBF2Q12772 1141 aa13.43□□□□□ -0.26
SPG11-216ENST00000559347 HSP90AB4PQ58FF6 505 aa13.43□□□□□ -0.26
SPG11-216ENST00000559347 TBC1D9Q6ZT07 1266 aa13.43□□□□□ -0.26
SPG11-216ENST00000559347 NAV1Q8NEY1 1877 aa13.43□□□□□ -0.26
SPG11-216ENST00000559347 YTHDC1Q96MU7 727 aaKnown RBP13.43□□□□□ -0.26
SPG11-216ENST00000559347 CCDC8Q9H0W5 538 aaPredicted RBP13.43□□□□□ -0.26
SPG11-216ENST00000559347 USP40Q9NVE5 1235 aa13.43□□□□□ -0.26
SPG11-216ENST00000559347 TM4SF4P48230 202 aa13.42□□□□□ -0.26
SPG11-216ENST00000559347 TCP10Q12799 353 aa13.42□□□□□ -0.26
SPG11-216ENST00000559347 VGLL4Q14135 290 aa13.42□□□□□ -0.26
SPG11-216ENST00000559347 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.42□□□□□ -0.26
SPG11-216ENST00000559347 RHPN1Q8TCX5 695 aa13.42□□□□□ -0.26
SPG11-216ENST00000559347 HOOK2Q96ED9 719 aa13.42□□□□□ -0.26
SPG11-216ENST00000559347 SLC10A4Q96EP9 437 aa13.42□□□□□ -0.26
SPG11-216ENST00000559347 IDI2Q9BXS1 227 aa13.42□□□□□ -0.26
SPG11-216ENST00000559347 ELP3Q9H9T3 547 aa13.42□□□□□ -0.26
SPG11-216ENST00000559347 SNRKQ9NRH2 765 aa13.42□□□□□ -0.26
SPG11-216ENST00000559347 RAI14Q9P0K7 980 aa13.42□□□□□ -0.26
SPG11-216ENST00000559347 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.42□□□□□ -0.26
SPG11-216ENST00000559347 MYH1P12882 1939 aa13.42□□□□□ -0.26
SPG11-216ENST00000559347 HTTP42858 3142 aa13.42□□□□□ -0.26
SPG11-216ENST00000559347 GPR75-ASB3A0A0A6YYF3 556 aa13.41□□□□□ -0.26
SPG11-216ENST00000559347 MANSC4A6NHS7 340 aaPredicted RBP13.41□□□□□ -0.26
SPG11-216ENST00000559347 WDHD1O75717 1129 aaPredicted RBP13.41□□□□□ -0.26
SPG11-216ENST00000559347 CYP2E1P05181 493 aaPredicted RBP13.41□□□□□ -0.26
SPG11-216ENST00000559347 ZAP70P43403 619 aa13.41□□□□□ -0.26
SPG11-216ENST00000559347 RGS3P49796 1198 aa13.41□□□□□ -0.26
SPG11-216ENST00000559347 RRP1P56182 461 aaKnown RBP13.41□□□□□ -0.26
SPG11-216ENST00000559347 RHBDL3P58872 404 aa13.41□□□□□ -0.26
SPG11-216ENST00000559347 GSTO1P78417 241 aa13.41□□□□□ -0.26
SPG11-216ENST00000559347 DCAF15Q66K64 600 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms