RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 FBXL18Q96ME1 805 aa9.12□□□□□ -0.95
VPS13C-208ENST00000559119 LRRC4CQ9HCJ2 640 aa9.12□□□□□ -0.95
VPS13C-208ENST00000559119 BSDC1Q9NW68 430 aaPredicted RBP9.12□□□□□ -0.95
VPS13C-208ENST00000559119 DAGLAQ9Y4D2 1042 aa9.12□□□□□ -0.95
VPS13C-208ENST00000559119 TP53INP2Q8IXH6 220 aa9.11□□□□□ -0.95
VPS13C-208ENST00000559119 RETREG2Q8NC44 543 aa9.11□□□□□ -0.95
VPS13C-208ENST00000559119 CSRNP1Q96S65 589 aa9.11□□□□□ -0.95
VPS13C-208ENST00000559119 WDR18Q9BV38 432 aa9.11□□□□□ -0.95
VPS13C-208ENST00000559119 GSX1Q9H4S2 264 aaPredicted RBP9.11□□□□□ -0.95
VPS13C-208ENST00000559119 ZNF157P51786 506 aaPredicted RBP9.1□□□□□ -0.95
VPS13C-208ENST00000559119 HNRNPUQ00839 825 aaKnown RBP eCLIP9.1□□□□□ -0.95
VPS13C-208ENST00000559119 ZNF765Q7L2R6 523 aa9.1□□□□□ -0.95
VPS13C-208ENST00000559119 SYNGAP1Q96PV0 1343 aa9.09□□□□□ -0.95
VPS13C-208ENST00000559119 IGHA2P01877 340 aa9.09□□□□□ -0.95
VPS13C-208ENST00000559119 GRM2Q14416 872 aa9.09□□□□□ -0.95
VPS13C-208ENST00000559119 RBCK1Q9BYM8 510 aa9.09□□□□□ -0.95
VPS13C-208ENST00000559119 ZC3H12CQ9C0D7 883 aaKnown RBP9.09□□□□□ -0.95
VPS13C-208ENST00000559119 LGR6Q9HBX8 967 aa9.09□□□□□ -0.95
VPS13C-208ENST00000559119 PPP4R2Q9NY27 417 aa9.09□□□□□ -0.95
VPS13C-208ENST00000559119 SLFN14P0C7P3 912 aa9.08□□□□□ -0.96
VPS13C-208ENST00000559119 LIG1P18858 919 aa9.08□□□□□ -0.96
VPS13C-208ENST00000559119 DTHD1Q6ZMT9 781 aa9.08□□□□□ -0.96
VPS13C-208ENST00000559119 KRTAP19-1Q8IUB9 90 aa9.08□□□□□ -0.96
VPS13C-208ENST00000559119 EPS8L3Q8TE67 593 aaKnown RBP9.08□□□□□ -0.96
VPS13C-208ENST00000559119 ALKBH8Q96BT7 664 aaKnown RBP9.08□□□□□ -0.96
VPS13C-208ENST00000559119 PIDD1Q9HB75 910 aa9.08□□□□□ -0.96
VPS13C-208ENST00000559119 NLRP2Q9NX02 1062 aa9.08□□□□□ -0.96
VPS13C-208ENST00000559119 PPP1R9AQ9ULJ8 1098 aa9.08□□□□□ -0.96
VPS13C-208ENST00000559119 FAAP100Q0VG06 881 aa9.07□□□□□ -0.96
VPS13C-208ENST00000559119 FLCNQ8NFG4 579 aa9.07□□□□□ -0.96
VPS13C-208ENST00000559119 CCDC86Q9H6F5 360 aaKnown RBP9.07□□□□□ -0.96
VPS13C-208ENST00000559119 C1GALT1Q9NS00 363 aa9.07□□□□□ -0.96
VPS13C-208ENST00000559119 ZC3H7BQ9UGR2 993 aaKnown RBP9.07□□□□□ -0.96
VPS13C-208ENST00000559119 DYNC1LI2O43237 492 aaPredicted RBP9.06□□□□□ -0.96
VPS13C-208ENST00000559119 FCGRTP55899 365 aa9.06□□□□□ -0.96
VPS13C-208ENST00000559119 PPP2R3AQ06190 1150 aa9.06□□□□□ -0.96
VPS13C-208ENST00000559119 OGFOD3Q6PK18 319 aa9.06□□□□□ -0.96
VPS13C-208ENST00000559119 SEZ6L2Q6UXD5 910 aa9.06□□□□□ -0.96
VPS13C-208ENST00000559119 GLIS3Q8NEA6 775 aa9.06□□□□□ -0.96
VPS13C-208ENST00000559119 ATXN3LQ9H3M9 355 aa9.06□□□□□ -0.96
VPS13C-208ENST00000559119 GPN3Q9UHW5 284 aaPredicted RBP9.06□□□□□ -0.96
VPS13C-208ENST00000559119 TMPRSS2O15393 492 aa9.05□□□□□ -0.96
VPS13C-208ENST00000559119 GSTP1P09211 210 aaKnown RBP9.05□□□□□ -0.96
VPS13C-208ENST00000559119 ID3Q02535 119 aa9.05□□□□□ -0.96
VPS13C-208ENST00000559119 CYP27C1Q4G0S4 372 aa9.05□□□□□ -0.96
VPS13C-208ENST00000559119 AGBL5Q8NDL9 886 aa9.05□□□□□ -0.96
VPS13C-208ENST00000559119 WDR89Q96FK6 387 aaPredicted RBP9.05□□□□□ -0.96
VPS13C-208ENST00000559119 CRIM1Q9NZV1 1036 aa9.05□□□□□ -0.96
VPS13C-208ENST00000559119 BIN2Q9UBW5 565 aaPredicted RBP9.05□□□□□ -0.96
VPS13C-208ENST00000559119 SOWAHDA6NJG2 315 aa9.04□□□□□ -0.96
VPS13C-208ENST00000559119 NFXL1Q6ZNB6 911 aa9.04□□□□□ -0.96
VPS13C-208ENST00000559119 TMEM39AQ9NV64 488 aa9.04□□□□□ -0.96
VPS13C-208ENST00000559119 SUPT5HO00267 1087 aaKnown RBP9.03□□□□□ -0.96
VPS13C-208ENST00000559119 FANCD2OSQ96PS1 177 aa9.03□□□□□ -0.96
VPS13C-208ENST00000559119 KRT82Q9NSB4 513 aa9.03□□□□□ -0.96
VPS13C-208ENST00000559119 ZNF862O60290 1169 aa9.02□□□□□ -0.97
VPS13C-208ENST00000559119 XRCC5P13010 732 aaKnown RBP9.02□□□□□ -0.97
VPS13C-208ENST00000559119 YBX3P16989 372 aaKnown RBP eCLIP9.02□□□□□ -0.97
VPS13C-208ENST00000559119 KIF4BQ2VIQ3 1234 aa9.02□□□□□ -0.97
VPS13C-208ENST00000559119 ERICH6Q7L0X2 663 aa9.02□□□□□ -0.97
VPS13C-208ENST00000559119 TMC7Q7Z402 723 aa9.02□□□□□ -0.97
VPS13C-208ENST00000559119 KCNB2Q92953 911 aa9.02□□□□□ -0.97
VPS13C-208ENST00000559119 PAK6Q9NQU5 681 aaPredicted RBP9.02□□□□□ -0.97
VPS13C-208ENST00000559119 DCTN4Q9UJW0 460 aa9.02□□□□□ -0.97
VPS13C-208ENST00000559119 BTBD11A6QL63 1104 aa9.01□□□□□ -0.97
VPS13C-208ENST00000559119 RNGTTO60942 597 aaKnown RBP9.01□□□□□ -0.97
VPS13C-208ENST00000559119 CDK5R2Q13319 367 aa9.01□□□□□ -0.97
VPS13C-208ENST00000559119 PI16Q6UXB8 463 aa9.01□□□□□ -0.97
VPS13C-208ENST00000559119 CBLL1Q75N03 491 aa9.01□□□□□ -0.97
VPS13C-208ENST00000559119 SMYD4Q8IYR2 804 aaPredicted RBP9.01□□□□□ -0.97
VPS13C-208ENST00000559119 BCO2Q9BYV7 579 aa9.01□□□□□ -0.97
VPS13C-208ENST00000559119 SLC5A6Q9Y289 635 aa9.01□□□□□ -0.97
VPS13C-208ENST00000559119 AKAP2Q9Y2D5 859 aa9.01□□□□□ -0.97
VPS13C-208ENST00000559119 FAM87AP0C7U9 286 aa9□□□□□ -0.97
VPS13C-208ENST00000559119 DISC1Q9NRI5 854 aa9□□□□□ -0.97
VPS13C-208ENST00000559119 TTLL4Q14679 1199 aa8.99□□□□□ -0.97
VPS13C-208ENST00000559119 SULF2Q8IWU5 870 aa8.99□□□□□ -0.97
VPS13C-208ENST00000559119 STK11IPQ8N1F8 1099 aa8.99□□□□□ -0.97
VPS13C-208ENST00000559119 ASIC4Q96FT7 647 aa8.99□□□□□ -0.97
VPS13C-208ENST00000559119 PNMA6FA0A0J9YX94 578 aa8.98□□□□□ -0.97
VPS13C-208ENST00000559119 HCLS1P14317 486 aaPredicted RBP8.98□□□□□ -0.97
VPS13C-208ENST00000559119 PLCB3Q01970 1234 aa8.98□□□□□ -0.97
VPS13C-208ENST00000559119 BCL7CQ8WUZ0 217 aaPredicted RBP8.98□□□□□ -0.97
VPS13C-208ENST00000559119 SSU72Q9NP77 194 aaKnown RBP8.98□□□□□ -0.97
VPS13C-208ENST00000559119 PCDHGC5Q9Y5F6 944 aa8.98□□□□□ -0.97
VPS13C-208ENST00000559119 ARNTP27540 789 aa8.97□□□□□ -0.97
VPS13C-208ENST00000559119 MAPK1P28482 360 aa8.97□□□□□ -0.97
VPS13C-208ENST00000559119 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.97□□□□□ -0.97
VPS13C-208ENST00000559119 NXPE4Q6UWF7 544 aa8.97□□□□□ -0.97
VPS13C-208ENST00000559119 PDZD3Q86UT5 571 aa8.97□□□□□ -0.97
VPS13C-208ENST00000559119 MISP3Q96FF7 219 aa8.97□□□□□ -0.97
VPS13C-208ENST00000559119 EMILIN2Q9BXX0 1053 aa8.97□□□□□ -0.97
VPS13C-208ENST00000559119 PCOLCE2Q9UKZ9 415 aa8.97□□□□□ -0.97
VPS13C-208ENST00000559119 GNEQ9Y223 722 aaKnown RBP8.97□□□□□ -0.97
VPS13C-208ENST00000559119 JUNBP17275 347 aaPredicted RBP8.96□□□□□ -0.98
VPS13C-208ENST00000559119 COL19A1Q14993 1142 aa8.96□□□□□ -0.98
VPS13C-208ENST00000559119 PLCL1Q15111 1095 aa8.96□□□□□ -0.98
VPS13C-208ENST00000559119 MAP1SQ66K74 1059 aaPredicted RBP8.96□□□□□ -0.98
VPS13C-208ENST00000559119 ARHGAP27Q6ZUM4 889 aa8.96□□□□□ -0.98
VPS13C-208ENST00000559119 NETO1Q8TDF5 533 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms