RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 ZPR1O75312 459 aa12.42□□□□□ -0.42
CUX1-217ENST00000558836 CCDC192P0DO97 292 aa12.42□□□□□ -0.42
CUX1-217ENST00000558836 METAP2P50579 478 aaKnown RBP eCLIP12.42□□□□□ -0.42
CUX1-217ENST00000558836 TYRO3Q06418 890 aa12.42□□□□□ -0.42
CUX1-217ENST00000558836 TMEM67Q5HYA8 995 aa12.42□□□□□ -0.42
CUX1-217ENST00000558836 CCAR1Q8IX12 1150 aaKnown RBP12.42□□□□□ -0.42
CUX1-217ENST00000558836 GOLPH3LQ9H4A5 285 aa12.42□□□□□ -0.42
CUX1-217ENST00000558836 KIF3AQ9Y496 699 aa12.42□□□□□ -0.42
CUX1-217ENST00000558836 CYP2D7A0A087X1C5 515 aa12.42□□□□□ -0.42
CUX1-217ENST00000558836 KIF28PB7ZC32 967 aa12.42□□□□□ -0.42
CUX1-217ENST00000558836 IFIT3O14879 490 aaKnown RBP12.42□□□□□ -0.42
CUX1-217ENST00000558836 APOA5Q6Q788 366 aa12.42□□□□□ -0.42
CUX1-217ENST00000558836 IGDCC4Q8TDY8 1250 aa12.42□□□□□ -0.42
CUX1-217ENST00000558836 CLIC4Q9Y696 253 aa12.42□□□□□ -0.42
CUX1-217ENST00000558836 DYNLL1P63167 89 aaKnown RBP12.41□□□□□ -0.42
CUX1-217ENST00000558836 EVX2Q03828 476 aa12.41□□□□□ -0.42
CUX1-217ENST00000558836 SLC4A8Q2Y0W8 1093 aa12.41□□□□□ -0.42
CUX1-217ENST00000558836 FBXL16Q8N461 479 aa12.41□□□□□ -0.42
CUX1-217ENST00000558836 MRVI1Q9Y6F6 885 aa12.41□□□□□ -0.42
CUX1-217ENST00000558836 DHX16O60231 1041 aaKnown RBP12.41□□□□□ -0.42
CUX1-217ENST00000558836 ANO6Q4KMQ2 910 aa12.41□□□□□ -0.42
CUX1-217ENST00000558836 MFSD6Q6ZSS7 791 aa12.41□□□□□ -0.42
CUX1-217ENST00000558836 FBXO18Q8NFZ0 1043 aa12.41□□□□□ -0.42
CUX1-217ENST00000558836 ARHGEF1Q92888 912 aaKnown RBP12.41□□□□□ -0.42
CUX1-217ENST00000558836 SRCAPQ6ZRS2 3230 aa12.4□□□□□ -0.42
CUX1-217ENST00000558836 FAM84BQ96KN1 310 aaPredicted RBP12.4□□□□□ -0.42
CUX1-217ENST00000558836 LY9Q9HBG7 655 aa12.4□□□□□ -0.42
CUX1-217ENST00000558836 BSDC1Q9NW68 430 aaPredicted RBP12.4□□□□□ -0.42
CUX1-217ENST00000558836 RCOR1Q9UKL0 485 aa12.4□□□□□ -0.42
CUX1-217ENST00000558836 NOL7Q9UMY1 257 aaKnown RBP12.4□□□□□ -0.42
CUX1-217ENST00000558836 ATRNO75882 1429 aa12.4□□□□□ -0.42
CUX1-217ENST00000558836 A0A1B0GVL5 298 aa12.4□□□□□ -0.42
CUX1-217ENST00000558836 PRDM1O75626 825 aa12.4□□□□□ -0.42
CUX1-217ENST00000558836 CHAF1AQ13111 956 aaPredicted RBP12.4□□□□□ -0.42
CUX1-217ENST00000558836 SF3B3Q15393 1217 aaKnown RBP12.4□□□□□ -0.42
CUX1-217ENST00000558836 AKNAD1Q5T1N1 836 aa12.4□□□□□ -0.42
CUX1-217ENST00000558836 TXNRD3Q86VQ6 643 aa12.4□□□□□ -0.42
CUX1-217ENST00000558836 SPC24Q8NBT2 197 aa12.4□□□□□ -0.42
CUX1-217ENST00000558836 NLRP3Q96P20 1036 aa12.4□□□□□ -0.42
CUX1-217ENST00000558836 NARFQ9UHQ1 456 aa12.4□□□□□ -0.42
CUX1-217ENST00000558836 ZBTB43O43298 467 aa12.39□□□□□ -0.43
CUX1-217ENST00000558836 RPS8P62241 208 aaKnown RBP12.39□□□□□ -0.43
CUX1-217ENST00000558836 ALG1Q9BT22 464 aa12.39□□□□□ -0.43
CUX1-217ENST00000558836 DNAJC25Q9H1X3 360 aa12.39□□□□□ -0.43
CUX1-217ENST00000558836 CLSTN2Q9H4D0 955 aa12.39□□□□□ -0.43
CUX1-217ENST00000558836 PCDHA7Q9UN72 937 aa12.39□□□□□ -0.43
CUX1-217ENST00000558836 RTCBQ9Y3I0 505 aaKnown RBP12.39□□□□□ -0.43
CUX1-217ENST00000558836 LRP5O75197 1615 aa12.39□□□□□ -0.43
CUX1-217ENST00000558836 RPS6KA4O75676 772 aa12.39□□□□□ -0.43
CUX1-217ENST00000558836 CAVIN4Q5BKX8 364 aa12.39□□□□□ -0.43
CUX1-217ENST00000558836 ZNF384Q8TF68 577 aa12.39□□□□□ -0.43
CUX1-217ENST00000558836 ZNF396Q96N95 335 aaPredicted RBP12.39□□□□□ -0.43
CUX1-217ENST00000558836 TTC12Q9H892 705 aaPredicted RBP12.39□□□□□ -0.43
CUX1-217ENST00000558836 RANBP6O60518 1105 aaKnown RBP12.39□□□□□ -0.43
CUX1-217ENST00000558836 SF3A1Q15459 793 aaKnown RBP12.39□□□□□ -0.43
CUX1-217ENST00000558836 MEX3CQ5U5Q3 659 aaKnown RBP12.39□□□□□ -0.43
CUX1-217ENST00000558836 FNBP4Q8N3X1 1017 aaPredicted RBP12.39□□□□□ -0.43
CUX1-217ENST00000558836 FSIP1Q8NA03 581 aa12.39□□□□□ -0.43
CUX1-217ENST00000558836 NACAP1Q9BZK3 213 aa12.39□□□□□ -0.43
CUX1-217ENST00000558836 FAM217BQ9NTX9 383 aaPredicted RBP12.39□□□□□ -0.43
CUX1-217ENST00000558836 DDX19AQ9NUU7 478 aaKnown RBP12.39□□□□□ -0.43
CUX1-217ENST00000558836 SLC12A7Q9Y666 1083 aa12.39□□□□□ -0.43
CUX1-217ENST00000558836 COL1A1P02452 1464 aaPredicted RBP12.38□□□□□ -0.43
CUX1-217ENST00000558836 GOLGA8AA7E2F4 631 aa12.38□□□□□ -0.43
CUX1-217ENST00000558836 MARCKSP29966 332 aaPredicted RBP12.38□□□□□ -0.43
CUX1-217ENST00000558836 NUP133Q8WUM0 1156 aa12.38□□□□□ -0.43
CUX1-217ENST00000558836 GPR101Q96P66 508 aaPredicted RBP12.38□□□□□ -0.43
CUX1-217ENST00000558836 SLC26A6Q9BXS9 759 aa12.38□□□□□ -0.43
CUX1-217ENST00000558836 CCDC39Q9UFE4 941 aa12.38□□□□□ -0.43
CUX1-217ENST00000558836 ZKSCAN5Q9Y2L8 839 aa12.38□□□□□ -0.43
CUX1-217ENST00000558836 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.38□□□□□ -0.43
CUX1-217ENST00000558836 ZMYM6O95789 1325 aa12.38□□□□□ -0.43
CUX1-217ENST00000558836 MAGEB6P1A0A0J9YX57 407 aa12.38□□□□□ -0.43
CUX1-217ENST00000558836 CCDC69A6NI79 296 aa12.38□□□□□ -0.43
CUX1-217ENST00000558836 GUCY1A2P33402 732 aa12.38□□□□□ -0.43
CUX1-217ENST00000558836 SNW1Q13573 536 aaKnown RBP12.38□□□□□ -0.43
CUX1-217ENST00000558836 STK38Q15208 465 aa12.38□□□□□ -0.43
CUX1-217ENST00000558836 UVSSAQ2YD98 709 aa12.38□□□□□ -0.43
CUX1-217ENST00000558836 C17orf53Q8N3J3 647 aaPredicted RBP12.38□□□□□ -0.43
CUX1-217ENST00000558836 BCL11BQ9C0K0 894 aaPredicted RBP12.38□□□□□ -0.43
CUX1-217ENST00000558836 CBX8Q9HC52 389 aa12.38□□□□□ -0.43
CUX1-217ENST00000558836 GNL3LQ9NVN8 582 aaKnown RBP12.38□□□□□ -0.43
CUX1-217ENST00000558836 CNTNAP4Q9C0A0 1308 aa12.38□□□□□ -0.43
CUX1-217ENST00000558836 RTL9Q8NET4 1388 aa12.38□□□□□ -0.43
CUX1-217ENST00000558836 UBE4AQ14139 1066 aa12.37□□□□□ -0.43
CUX1-217ENST00000558836 ALX1Q15699 326 aa12.37□□□□□ -0.43
CUX1-217ENST00000558836 SASS6Q6UVJ0 657 aa12.37□□□□□ -0.43
CUX1-217ENST00000558836 TPTE2Q6XPS3 522 aa12.37□□□□□ -0.43
CUX1-217ENST00000558836 FAM196AQ6ZSG2 479 aa12.37□□□□□ -0.43
CUX1-217ENST00000558836 CHMP4CQ96CF2 233 aa12.37□□□□□ -0.43
CUX1-217ENST00000558836 RFC4P35249 363 aa12.37□□□□□ -0.43
CUX1-217ENST00000558836 IARSP41252 1262 aaKnown RBP12.37□□□□□ -0.43
CUX1-217ENST00000558836 KIF23Q02241 960 aaPredicted RBP12.37□□□□□ -0.43
CUX1-217ENST00000558836 PPARAQ07869 468 aa12.37□□□□□ -0.43
CUX1-217ENST00000558836 MYSM1Q5VVJ2 828 aa12.37□□□□□ -0.43
CUX1-217ENST00000558836 FAM200AQ8TCP9 573 aa12.37□□□□□ -0.43
CUX1-217ENST00000558836 hCG_1642624A0A1W2PR95 340 aa12.36□□□□□ -0.43
CUX1-217ENST00000558836 PRDX5P30044 214 aa12.36□□□□□ -0.43
CUX1-217ENST00000558836 GNL2Q13823 731 aaKnown RBP12.36□□□□□ -0.43
CUX1-217ENST00000558836 NTRK3Q16288 839 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms