RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 PSMC4P43686 418 aa10.34□□□□□ -0.75
CCDC88C-214ENST00000557507 HDLBPQ00341 1268 aaKnown RBP10.34□□□□□ -0.75
CCDC88C-214ENST00000557507 EXOSC9Q06265 439 aaKnown RBP10.34□□□□□ -0.75
CCDC88C-214ENST00000557507 FBXO33Q7Z6M2 555 aa10.34□□□□□ -0.75
CCDC88C-214ENST00000557507 FAM83AQ86UY5 434 aa10.34□□□□□ -0.75
CCDC88C-214ENST00000557507 DPF3Q92784 378 aa10.34□□□□□ -0.75
CCDC88C-214ENST00000557507 ZDHHC15Q96MV8 337 aa10.34□□□□□ -0.75
CCDC88C-214ENST00000557507 RIPOR2Q9Y4F9 1068 aa10.34□□□□□ -0.75
CCDC88C-214ENST00000557507 FRMPD3Q5JV73 1810 aa10.34□□□□□ -0.75
CCDC88C-214ENST00000557507 MYPNQ86TC9 1320 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 PDHXO00330 501 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 CCL5P13501 91 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 GRK4P32298 578 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 GJA8P48165 433 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 MOGSQ13724 837 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 LRRC24Q50LG9 513 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 APOBEC3HQ6NTF7 200 aaKnown RBP10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 MIGA2Q7L4E1 593 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 ANKRD23Q86SG2 305 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 VGLL2Q8N8G2 317 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 TBC1D22AQ8WUA7 517 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 ZNF341Q9BYN7 854 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 C9orf78Q9NZ63 289 aaPredicted RBP10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 TMOD2Q9NZR1 351 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 CDK5RAP2Q96SN8 1893 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 MROH5Q6ZUA9 1318 aa10.33□□□□□ -0.76
CCDC88C-214ENST00000557507 GJB1P08034 283 aa10.32□□□□□ -0.76
CCDC88C-214ENST00000557507 NBPF7P0C2Y1 421 aaPredicted RBP10.32□□□□□ -0.76
CCDC88C-214ENST00000557507 PRKCZQ05513 592 aa10.32□□□□□ -0.76
CCDC88C-214ENST00000557507 PPATQ06203 517 aa10.32□□□□□ -0.76
CCDC88C-214ENST00000557507 FKBP1CQ5VVH2 108 aa10.32□□□□□ -0.76
CCDC88C-214ENST00000557507 DCAF15Q66K64 600 aa10.32□□□□□ -0.76
CCDC88C-214ENST00000557507 VPS37DQ86XT2 251 aa10.32□□□□□ -0.76
CCDC88C-214ENST00000557507 RAET1EQ8TD07 263 aa10.32□□□□□ -0.76
CCDC88C-214ENST00000557507 KCNH4Q9UQ05 1017 aa10.32□□□□□ -0.76
CCDC88C-214ENST00000557507 MAST3O60307 1309 aa10.32□□□□□ -0.76
CCDC88C-214ENST00000557507 SOX1O00570 391 aaPredicted RBP10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 ZBTB7BO15156 539 aaPredicted RBP10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 FRAT2O75474 233 aaPredicted RBP10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 ALDH1L1O75891 902 aa10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 FARP2O94887 1054 aaPredicted RBP10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 FMNL1O95466 1100 aaPredicted RBP10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 BCRP11274 1271 aa10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 BCAMP50895 628 aa10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 METTL24Q5JXM2 366 aa10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 SLC4A10Q6U841 1118 aa10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 ANKRD44Q8N8A2 993 aa10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 NKX2-3Q8TAU0 364 aa10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 HOOK2Q96ED9 719 aa10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 HTATIP2Q9BUP3 242 aa10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 RNF208Q9H0X6 261 aa10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 UNC93B1Q9H1C4 597 aa10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 BICC1Q9H694 974 aaKnown RBP10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 SPINK5Q9NQ38 1064 aaPredicted RBP10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 GABRQQ9UN88 632 aa10.31□□□□□ -0.76
CCDC88C-214ENST00000557507 SIPA1L1O43166 1804 aa10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 ATRNL1Q5VV63 1379 aa10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 CYP2C8P10632 490 aa10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 HOXD10P28358 340 aa10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 TCP10Q12799 353 aa10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 NFIAQ12857 509 aa10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 RABL6Q3YEC7 729 aaPredicted RBP10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 CAVIN4Q5BKX8 364 aa10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 NOL9Q5SY16 702 aaKnown RBP10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 GPAT2Q6NUI2 795 aa10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 HHIPL2Q6UWX4 724 aa10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 KLHDC4Q8TBB5 520 aa10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 U2AF1L4Q8WU68 220 aaKnown RBP10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 MRIQ9BWK5 157 aa10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 SRCIN1Q9C0H9 1055 aa10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 ZNF112Q9UJU3 913 aa10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 SALL2Q9Y467 1007 aaPredicted RBP10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 UTYO14607 1347 aa10.3□□□□□ -0.76
CCDC88C-214ENST00000557507 FOCADQ5VW36 1801 aa10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 PDE8BO95263 885 aa10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 FGFR2P21802 821 aa10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 FCGRTP55899 365 aa10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 UBXN2AP68543 259 aa10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 DIXDC1Q155Q3 683 aa10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 NCBP3Q53F19 620 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 CDC42EP5Q6NZY7 148 aa10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 SLAIN1Q8ND83 568 aa10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 FAM151AQ8WW52 585 aa10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 LRCH3Q96II8 777 aa10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 PARK7Q99497 189 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 BIN2Q9UBW5 565 aaPredicted RBP10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 SUGT1Q9Y2Z0 365 aa10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 DAGLAQ9Y4D2 1042 aa10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 MYO5AQ9Y4I1 1855 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 A0A0C4DFX4 3053 aa10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 KIF16BQ96L93 1317 aa10.29□□□□□ -0.76
CCDC88C-214ENST00000557507 RFX7Q2KHR2 1363 aa10.28□□□□□ -0.76
CCDC88C-214ENST00000557507 DLL1O00548 723 aa10.28□□□□□ -0.76
CCDC88C-214ENST00000557507 INHAP05111 366 aa10.28□□□□□ -0.76
CCDC88C-214ENST00000557507 ELNP15502 786 aa10.28□□□□□ -0.76
CCDC88C-214ENST00000557507 WDR63Q8IWG1 891 aa10.28□□□□□ -0.76
CCDC88C-214ENST00000557507 SLC17A8Q8NDX2 589 aa10.28□□□□□ -0.76
CCDC88C-214ENST00000557507 FAM198AQ9UFP1 575 aa10.28□□□□□ -0.76
CCDC88C-214ENST00000557507 NR2E3Q9Y5X4 410 aa10.28□□□□□ -0.76
CCDC88C-214ENST00000557507 MAST2Q6P0Q8 1798 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms