RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	GPHN	Q9NQX3	736 aa	Predicted RBP	18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	DACH1	Q9UI36	760 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	FHOD1	Q9Y613	1164 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	IGSF3	O75054	1194 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	METAP2	P50579	478 aa	Known RBP eCLIP	18.74	■□□□□ 0.59	1e-6	■■■□□ 16.1
SHMT2-231	ENST00000557433	CFAP100	Q494V2	611 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	PLA2G12B	Q9BX93	195 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	CALCOCO1	Q9P1Z2	691 aa		18.74	■□□□□ 0.59
SHMT2-231	ENST00000557433	ADAMTSL3	P82987	1691 aa		18.73	■□□□□ 0.59
SHMT2-231	ENST00000557433	STK36	Q9NRP7	1315 aa		18.73	■□□□□ 0.59
SHMT2-231	ENST00000557433	TADA3	O75528	432 aa		18.73	■□□□□ 0.59
SHMT2-231	ENST00000557433	ZRANB2	O95218	330 aa	Known RBP eCLIP	18.73	■□□□□ 0.59	1e-7	■□□□□ 9.4
SHMT2-231	ENST00000557433	HAND2	P61296	217 aa		18.73	■□□□□ 0.59
SHMT2-231	ENST00000557433	TRIM29	Q14134	588 aa		18.73	■□□□□ 0.59
SHMT2-231	ENST00000557433	TTF1	Q15361	905 aa	Predicted RBP	18.73	■□□□□ 0.59
SHMT2-231	ENST00000557433	REXO1L1P	Q8IX06	675 aa		18.73	■□□□□ 0.59
SHMT2-231	ENST00000557433	C19orf44	Q9H6X5	657 aa		18.73	■□□□□ 0.59
SHMT2-231	ENST00000557433	UBR2	Q8IWV8	1755 aa		18.73	■□□□□ 0.59
SHMT2-231	ENST00000557433	ERVV-2	B6SEH9	535 aa		18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	GPAA1	O43292	621 aa		18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	PNMA6A	P0CW24	399 aa	Predicted RBP	18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	TRIM28	Q13263	835 aa	Known RBP	18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	GNL2	Q13823	731 aa	Known RBP	18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	KRT40	Q6A162	431 aa		18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	SHC4	Q6S5L8	630 aa		18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	WASF1	Q92558	559 aa		18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	MAP3K14	Q99558	947 aa		18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	ISCA1	Q9BUE6	129 aa		18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	SH2B2	O14492	632 aa	Predicted RBP	18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	STX10	O60499	249 aa		18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	PPFIA3	O75145	1194 aa		18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	ATP1A3	P13637	1013 aa		18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	TEX35	Q5T0J7	233 aa		18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	KRBA2	Q6ZNG9	492 aa		18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	TTLL7	Q6ZT98	887 aa		18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	ZNF594	Q96JF6	807 aa	Predicted RBP	18.72	■□□□□ 0.59
SHMT2-231	ENST00000557433	MARCKS	P29966	332 aa	Predicted RBP	18.71	■□□□□ 0.59
SHMT2-231	ENST00000557433	CT47A1	Q5JQC4	288 aa	Predicted RBP	18.71	■□□□□ 0.59
SHMT2-231	ENST00000557433	MYH7	P12883	1935 aa		18.71	■□□□□ 0.59
SHMT2-231	ENST00000557433	TBX2	Q13207	712 aa	Predicted RBP	18.7	■□□□□ 0.58
SHMT2-231	ENST00000557433	TRIML1	Q8N9V2	468 aa		18.7	■□□□□ 0.58
SHMT2-231	ENST00000557433	CNNM3	Q8NE01	707 aa		18.7	■□□□□ 0.58
SHMT2-231	ENST00000557433	PUS3	Q9BZE2	481 aa	Known RBP	18.7	■□□□□ 0.58
SHMT2-231	ENST00000557433	PUS7L	Q9H0K6	701 aa	Known RBP	18.7	■□□□□ 0.58
SHMT2-231	ENST00000557433	UBE3C	Q15386	1083 aa		18.7	■□□□□ 0.58
SHMT2-231	ENST00000557433	SGMS1	Q86VZ5	419 aa		18.7	■□□□□ 0.58
SHMT2-231	ENST00000557433	GPR161	Q8N6U8	529 aa	Known RBP	18.7	■□□□□ 0.58
SHMT2-231	ENST00000557433	MLKL	Q8NB16	471 aa		18.7	■□□□□ 0.58
SHMT2-231	ENST00000557433	KCNH3	Q9ULD8	1083 aa		18.7	■□□□□ 0.58
SHMT2-231	ENST00000557433	PPP2R2C	Q9Y2T4	447 aa		18.7	■□□□□ 0.58
SHMT2-231	ENST00000557433	PARP3	Q9Y6F1	533 aa		18.7	■□□□□ 0.58
SHMT2-231	ENST00000557433	PCDH11X	Q9BZA7	1347 aa		18.69	■□□□□ 0.58
SHMT2-231	ENST00000557433	PCDH11Y	Q9BZA8	1340 aa		18.69	■□□□□ 0.58
SHMT2-231	ENST00000557433	URI1	O94763	535 aa	Predicted RBP	18.69	■□□□□ 0.58
SHMT2-231	ENST00000557433	CYP2C19	P33261	490 aa		18.69	■□□□□ 0.58
SHMT2-231	ENST00000557433	IARS	P41252	1262 aa	Known RBP	18.69	■□□□□ 0.58
SHMT2-231	ENST00000557433	ZAP70	P43403	619 aa		18.69	■□□□□ 0.58
SHMT2-231	ENST00000557433	NT5DC1	Q5TFE4	455 aa		18.69	■□□□□ 0.58
SHMT2-231	ENST00000557433	JAKMIP3	Q5VZ66	844 aa		18.69	■□□□□ 0.58
SHMT2-231	ENST00000557433	APOA5	Q6Q788	366 aa		18.69	■□□□□ 0.58
SHMT2-231	ENST00000557433	KRI1	Q8N9T8	703 aa	Known RBP	18.69	■□□□□ 0.58
SHMT2-231	ENST00000557433	UTP14A	Q9BVJ6	771 aa	Known RBP	18.69	■□□□□ 0.58
SHMT2-231	ENST00000557433	NID2	Q14112	1375 aa		18.69	■□□□□ 0.58
SHMT2-231	ENST00000557433	PCCA	P05165	728 aa	Predicted RBP	18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	CASQ1	P31415	396 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	ADD2	P35612	726 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	ALX1	Q15699	326 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	KANK3	Q6NY19	840 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	METTL16	Q86W50	562 aa	Known RBP	18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	TMEM139	Q8IV31	216 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	ENOX1	Q8TC92	643 aa	Known RBP	18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	DPF2	Q92785	391 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	BAG1	Q99933	345 aa	Predicted RBP	18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	18.68	■□□□□ 0.58	5e-8	■■■□□ 18.8
SHMT2-231	ENST00000557433	KCP	Q6ZWJ8	1503 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	PAPPA	Q13219	1627 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	ZBTB43	O43298	467 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	CSF1R	P07333	972 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	ADORA1	P30542	326 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	LIFR	P42702	1097 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	TUBB4B	P68371	445 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	MAP3K9	P80192	1104 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	TCIRG1	Q13488	830 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	PNOC	Q13519	176 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	FANCL	Q9NW38	375 aa		18.68	■□□□□ 0.58
SHMT2-231	ENST00000557433	VWA3A	A6NCI4	1184 aa		18.67	■□□□□ 0.58
SHMT2-231	ENST00000557433	NPHP1	O15259	732 aa		18.67	■□□□□ 0.58
SHMT2-231	ENST00000557433	PLA2G4A	P47712	749 aa		18.67	■□□□□ 0.58
SHMT2-231	ENST00000557433	TAF7L	Q5H9L4	462 aa		18.67	■□□□□ 0.58
SHMT2-231	ENST00000557433	SPECC1L	Q69YQ0	1117 aa		18.67	■□□□□ 0.58
SHMT2-231	ENST00000557433	ZNF579	Q8NAF0	562 aa	Known RBP	18.67	■□□□□ 0.58
SHMT2-231	ENST00000557433	CCDC34	Q96HJ3	373 aa		18.67	■□□□□ 0.58
SHMT2-231	ENST00000557433	PCDHA5	Q9Y5H7	936 aa		18.67	■□□□□ 0.58
SHMT2-231	ENST00000557433	MDM2	Q00987	491 aa	Predicted RBP	18.66	■□□□□ 0.58
SHMT2-231	ENST00000557433	IFIT5	Q13325	482 aa	Known RBP	18.66	■□□□□ 0.58
SHMT2-231	ENST00000557433	SAFB	Q15424	915 aa	Known RBP eCLIP	18.66	■□□□□ 0.58
SHMT2-231	ENST00000557433	LRRN4CL	Q8ND94	238 aa		18.66	■□□□□ 0.58
SHMT2-231	ENST00000557433	UBXN6	Q9BZV1	441 aa		18.66	■□□□□ 0.58
SHMT2-231	ENST00000557433	ZBTB3	Q9H5J0	574 aa		18.66	■□□□□ 0.58
SHMT2-231	ENST00000557433	GJB4	Q9NTQ9	266 aa		18.66	■□□□□ 0.58

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