RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 NACAP1Q9BZK3 213 aa6.96□□□□□ -1.3
SYNE2-225ENST00000557060 ORC3Q9UBD5 711 aaPredicted RBP6.96□□□□□ -1.3
SYNE2-225ENST00000557060 ZNF804BA4D1E1 1349 aa6.95□□□□□ -1.3
SYNE2-225ENST00000557060 PATL2C9JE40 543 aaKnown RBP6.95□□□□□ -1.3
SYNE2-225ENST00000557060 SERPINB2P05120 415 aa6.95□□□□□ -1.3
SYNE2-225ENST00000557060 ATP2B1P20020 1258 aa6.95□□□□□ -1.3
SYNE2-225ENST00000557060 GNL2Q13823 731 aaKnown RBP6.95□□□□□ -1.3
SYNE2-225ENST00000557060 ERCC4Q92889 916 aaPredicted RBP6.95□□□□□ -1.3
SYNE2-225ENST00000557060 BCL11BQ9C0K0 894 aaPredicted RBP6.95□□□□□ -1.3
SYNE2-225ENST00000557060 RFX7Q2KHR2 1363 aa6.95□□□□□ -1.3
SYNE2-225ENST00000557060 PFKFB2O60825 505 aa6.95□□□□□ -1.3
SYNE2-225ENST00000557060 GYS1P13807 737 aa6.95□□□□□ -1.3
SYNE2-225ENST00000557060 METAP2P50579 478 aaKnown RBP eCLIP6.95□□□□□ -1.3
SYNE2-225ENST00000557060 TXNRD1Q16881 649 aa6.95□□□□□ -1.3
SYNE2-225ENST00000557060 PRR5LQ6MZQ0 368 aa6.95□□□□□ -1.3
SYNE2-225ENST00000557060 DZIP1Q86YF9 867 aaKnown RBP6.95□□□□□ -1.3
SYNE2-225ENST00000557060 MB21D2Q8IYB1 491 aaPredicted RBP6.95□□□□□ -1.3
SYNE2-225ENST00000557060 MYO5AQ9Y4I1 1855 aaKnown RBP6.95□□□□□ -1.3
SYNE2-225ENST00000557060 A0A087WWV3 80 aa6.95□□□□□ -1.3
SYNE2-225ENST00000557060 UFL1O94874 794 aa6.95□□□□□ -1.3
SYNE2-225ENST00000557060 LIG1P18858 919 aa6.95□□□□□ -1.3
SYNE2-225ENST00000557060 MECOMQ03112 1051 aa6.95□□□□□ -1.3
SYNE2-225ENST00000557060 ANGEL1Q9UNK9 670 aaKnown RBP6.95□□□□□ -1.3
SYNE2-225ENST00000557060 TACC3Q9Y6A5 838 aa6.95□□□□□ -1.3
SYNE2-225ENST00000557060 CCDC69A6NI79 296 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 USP17L12C9JPN9 530 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 USP17L21D6R901 530 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 NMT2O60551 498 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 CYP2D6P10635 497 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 UBE2HP62256 183 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 UBE4AQ14139 1066 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 GRIK5Q16478 980 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 RC3H1Q5TC82 1133 aaKnown RBP6.94□□□□□ -1.3
SYNE2-225ENST00000557060 SYAP1Q96A49 352 aaPredicted RBP6.94□□□□□ -1.3
SYNE2-225ENST00000557060 C8orf76Q96K31 380 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 SLC12A7Q9Y666 1083 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 SPEF2Q9C093 1822 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 MYH3P11055 1940 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 CDC27P30260 824 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 ME1P48163 572 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 FAM47AQ5JRC9 791 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 ZNF384Q8TF68 577 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 UBAC1Q9BSL1 405 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 DACT1Q9NYF0 836 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 HPS5Q9UPZ3 1129 aa6.94□□□□□ -1.3
SYNE2-225ENST00000557060 ERICH2A1L162 156 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 GOLGA8AA7E2F4 631 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 ZBTB43O43298 467 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 FDPSP14324 419 aaKnown RBP6.93□□□□□ -1.3
SYNE2-225ENST00000557060 TM4SF1P30408 202 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 AKNAD1Q5T1N1 836 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 ZNF512BQ96KM6 892 aaPredicted RBP6.93□□□□□ -1.3
SYNE2-225ENST00000557060 SLC26A6Q9BXS9 759 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 SAP30BPQ9UHR5 308 aaKnown RBP6.93□□□□□ -1.3
SYNE2-225ENST00000557060 BAZ2BQ9UIF8 2168 aaKnown RBP6.93□□□□□ -1.3
SYNE2-225ENST00000557060 CARMIL3Q8ND23 1372 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 ST5P78524 1137 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 PPARAQ07869 468 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 DDR1Q08345 913 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 SF3A1Q15459 793 aaKnown RBP6.93□□□□□ -1.3
SYNE2-225ENST00000557060 APOA5Q6Q788 366 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 LEO1Q8WVC0 666 aaPredicted RBP6.93□□□□□ -1.3
SYNE2-225ENST00000557060 USP28Q96RU2 1077 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 MCM9Q9NXL9 1143 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 BTAF1O14981 1849 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 WNK3Q9BYP7 1800 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 COL1A1P02452 1464 aaPredicted RBP6.93□□□□□ -1.3
SYNE2-225ENST00000557060 GPSM2P81274 684 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 LRSAM1Q6UWE0 723 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 SYNE3Q6ZMZ3 975 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 ZNF622Q969S3 477 aaKnown RBP eCLIP6.93□□□□□ -1.3
SYNE2-225ENST00000557060 ZNF274Q96GC6 653 aaPredicted RBP6.93□□□□□ -1.3
SYNE2-225ENST00000557060 TSPY26PQ9H489 355 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 NWD2Q9ULI1 1742 aa6.93□□□□□ -1.3
SYNE2-225ENST00000557060 DHX16O60231 1041 aaKnown RBP6.92□□□□□ -1.3
SYNE2-225ENST00000557060 NR1I2O75469 434 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 USP17L8P0C7I0 530 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 USP5P45974 858 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 ZNF445P59923 1031 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 HMGN5P82970 282 aaKnown RBP6.92□□□□□ -1.3
SYNE2-225ENST00000557060 GRAPQ13588 217 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 WTAPQ15007 396 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 ZNF827Q17R98 1081 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 SLC10A5Q5PT55 438 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 GRAPLQ8TC17 118 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-225ENST00000557060 ALG1Q9BT22 464 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 MXD3Q9BW11 206 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 KIF3AQ9Y496 699 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 AKAP11Q9UKA4 1901 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 ANKRD36CQ5JPF3 1778 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 G3V3G9 751 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 MARCKSP29966 332 aaPredicted RBP6.92□□□□□ -1.3
SYNE2-225ENST00000557060 RESTQ13127 1097 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 SART3Q15020 963 aaKnown RBP6.92□□□□□ -1.3
SYNE2-225ENST00000557060 DOK7Q18PE1 504 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 CSPP1Q1MSJ5 1256 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 CCDC183Q5T5S1 534 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 DCAF8Q5TAQ9 597 aa6.92□□□□□ -1.3
SYNE2-225ENST00000557060 NSUN4Q96CB9 384 aaKnown RBP6.92□□□□□ -1.3
SYNE2-225ENST00000557060 ANKRD2Q9GZV1 360 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms