RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 LARP6Q9BRS8 491 aaKnown RBP15.69■□□□□ 0.1
SHMT2-226ENST00000556825 IFNKQ9P0W0 207 aa15.69■□□□□ 0.1
SHMT2-226ENST00000556825 BIN2Q9UBW5 565 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-226ENST00000556825 HPCAL4Q9UM19 191 aa15.69■□□□□ 0.1
SHMT2-226ENST00000556825 AK2P54819 239 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 ZBED6P86452 979 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 SF3B2Q13435 895 aaKnown RBP15.68■□□□□ 0.1
SHMT2-226ENST00000556825 TUBB2AQ13885 445 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 CCDC47Q96A33 483 aaKnown RBP15.68■□□□□ 0.1
SHMT2-226ENST00000556825 BICD1Q96G01 975 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 TUBB2BQ9BVA1 445 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 YIPF3Q9GZM5 350 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 NDUFAB1O14561 156 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 IFFO1Q0D2I5 559 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 HSP90AB4PQ58FF6 505 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 WDR93Q6P2C0 686 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 FUKQ8N0W3 1084 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 CCDC114Q96M63 670 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 YIPF2Q9BWQ6 316 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 CARD14Q9BXL6 1004 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 PICK1Q9NRD5 415 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 SUN2Q9UH99 717 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 PUF60Q9UHX1 559 aaKnown RBP15.68■□□□□ 0.1
SHMT2-226ENST00000556825 ABCC4O15439 1325 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 ZC3H4Q9UPT8 1303 aaKnown RBP15.68■□□□□ 0.1
SHMT2-226ENST00000556825 ABCC3O15438 1527 aa15.68■□□□□ 0.1
SHMT2-226ENST00000556825 NPATQ14207 1427 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 GOLGA6L7A0A1B0GV03 622 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 GOLGA6CA6NDK9 693 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 OPA1O60313 960 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 PPFIA3O75145 1194 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 GOLGA6DP0CG33 693 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 HSPA4P34932 840 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 RRP12Q5JTH9 1297 aaKnown RBP15.67■□□□□ 0.1
SHMT2-226ENST00000556825 MTHFD1LQ6UB35 978 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 RBM17Q96I25 401 aaKnown RBP15.67■□□□□ 0.1
SHMT2-226ENST00000556825 RABEP2Q9H5N1 569 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 PAPOLBQ9NRJ5 636 aaKnown RBP15.67■□□□□ 0.1
SHMT2-226ENST00000556825 GOLGA6AQ9NYA3 693 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 CDC23Q9UJX2 597 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 LIN7AO14910 233 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-226ENST00000556825 ARHGAP6O43182 974 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 FCHSD2O94868 740 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 G3BP1Q13283 466 aaKnown RBP eCLIP15.67■□□□□ 0.12e-7■■■□□ 18
SHMT2-226ENST00000556825 ATL2Q8NHH9 583 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 CCDC12Q8WUD4 166 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-226ENST00000556825 PGBD1Q96JS3 809 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 MMADHCQ9H3L0 296 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-226ENST00000556825 ACTR5Q9H9F9 607 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-226ENST00000556825 TMEM165Q9HC07 324 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 GGA2Q9UJY4 613 aa15.67■□□□□ 0.1
SHMT2-226ENST00000556825 BIN1O00499 593 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 RNF8O76064 485 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 RHOXF2BP0C7M4 288 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 PAX3P23760 479 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 SFSWAPQ12872 951 aaKnown RBP15.66■□□□□ 0.1
SHMT2-226ENST00000556825 ZFAND2BQ8WV99 257 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 ACSBG1Q96GR2 724 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 RBM41Q96IZ5 413 aaKnown RBP15.66■□□□□ 0.1
SHMT2-226ENST00000556825 SH3GL2Q99962 352 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 RHOXF2Q9BQY4 288 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 LRRCC1Q9C099 1032 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 CAMSAP1Q5T5Y3 1602 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 KIAA1210Q9ULL0 1709 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 STIM1Q13586 685 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 SLMAPQ14BN4 828 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 LRRC23Q53EV4 343 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-226ENST00000556825 ANKRD44Q8N8A2 993 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 EBF2Q9HAK2 575 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 TRIM35Q9UPQ4 493 aa15.66■□□□□ 0.1
SHMT2-226ENST00000556825 ACCSLQ4AC99 568 aa15.65■□□□□ 0.1
SHMT2-226ENST00000556825 CFAP70Q5T0N1 1121 aa15.65■□□□□ 0.1
SHMT2-226ENST00000556825 ACBD5Q5T8D3 534 aaPredicted RBP15.65■□□□□ 0.1
SHMT2-226ENST00000556825 RNF187Q5TA31 235 aaPredicted RBP15.65■□□□□ 0.1
SHMT2-226ENST00000556825 MFSD4BQ5TF39 518 aa15.65■□□□□ 0.1
SHMT2-226ENST00000556825 NBPF15Q8N660 670 aa15.65■□□□□ 0.1
SHMT2-226ENST00000556825 ADGRF5Q8IZF2 1346 aa15.65■□□□□ 0.1
SHMT2-226ENST00000556825 MROH2AA6NES4 1674 aa15.65■□□□□ 0.1
SHMT2-226ENST00000556825 IFT172Q9UG01 1749 aa15.65■□□□□ 0.1
SHMT2-226ENST00000556825 GOLGA6BA6NDN3 693 aa15.64■□□□□ 0.09
SHMT2-226ENST00000556825 GGCXP38435 758 aa15.64■□□□□ 0.09
SHMT2-226ENST00000556825 AMPHP49418 695 aa15.64■□□□□ 0.09
SHMT2-226ENST00000556825 FAM173BQ6P4H8 233 aa15.64■□□□□ 0.09
SHMT2-226ENST00000556825 DZIP3Q86Y13 1208 aaKnown RBP15.64■□□□□ 0.09
SHMT2-226ENST00000556825 CCDC83Q8IWF9 413 aa15.64■□□□□ 0.09
SHMT2-226ENST00000556825 CCDC170Q8IYT3 715 aa15.64■□□□□ 0.09
SHMT2-226ENST00000556825 MRPL50Q8N5N7 158 aaKnown RBP15.64■□□□□ 0.09
SHMT2-226ENST00000556825 RASSF8Q8NHQ8 419 aa15.64■□□□□ 0.09
SHMT2-226ENST00000556825 NSMCE1Q8WV22 266 aa15.64■□□□□ 0.09
SHMT2-226ENST00000556825 RIN2Q8WYP3 895 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-226ENST00000556825 CFAP53Q96M91 514 aa15.64■□□□□ 0.09
SHMT2-226ENST00000556825 KIF24Q5T7B8 1368 aa15.64■□□□□ 0.09
SHMT2-226ENST00000556825 PDE1AP54750 535 aa15.64■□□□□ 0.09
SHMT2-226ENST00000556825 LARP1BQ659C4 914 aaKnown RBP15.64■□□□□ 0.09
SHMT2-226ENST00000556825 GORASP1Q9BQQ3 440 aa15.64■□□□□ 0.09
SHMT2-226ENST00000556825 TFIP11Q9UBB9 837 aaKnown RBP15.64■□□□□ 0.09
SHMT2-226ENST00000556825 ADGRL3Q9HAR2 1447 aa15.64■□□□□ 0.09
SHMT2-226ENST00000556825 PDLIM1O00151 329 aa15.63■□□□□ 0.09
SHMT2-226ENST00000556825 ZSCAN31Q96LW9 406 aaPredicted RBP15.63■□□□□ 0.09
SHMT2-226ENST00000556825 HOOK1Q9UJC3 728 aaKnown RBP15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms