RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 UBE4AQ14139 1066 aa11.86□□□□□ -0.51
TMEM260-211ENST00000556648 MEX3CQ5U5Q3 659 aaKnown RBP11.86□□□□□ -0.51
TMEM260-211ENST00000556648 CKAP2LQ8IYA6 745 aa11.86□□□□□ -0.51
TMEM260-211ENST00000556648 SDR42E1Q8WUS8 393 aa11.86□□□□□ -0.51
TMEM260-211ENST00000556648 C8orf76Q96K31 380 aa11.86□□□□□ -0.51
TMEM260-211ENST00000556648 FAM84BQ96KN1 310 aaPredicted RBP11.86□□□□□ -0.51
TMEM260-211ENST00000556648 GOLPH3LQ9H4A5 285 aa11.86□□□□□ -0.51
TMEM260-211ENST00000556648 TFCP2L1Q9NZI6 479 aa11.86□□□□□ -0.51
TMEM260-211ENST00000556648 RAI14Q9P0K7 980 aa11.86□□□□□ -0.51
TMEM260-211ENST00000556648 USP25Q9UHP3 1055 aa11.86□□□□□ -0.51
TMEM260-211ENST00000556648 TAOK2Q9UL54 1235 aa11.86□□□□□ -0.51
TMEM260-211ENST00000556648 RTCBQ9Y3I0 505 aaKnown RBP11.86□□□□□ -0.51
TMEM260-211ENST00000556648 AFF2P51816 1311 aa11.85□□□□□ -0.51
TMEM260-211ENST00000556648 GOLGA6L4A6NEF3 574 aa11.85□□□□□ -0.51
TMEM260-211ENST00000556648 UBE2Q2LH0YL09 131 aa11.85□□□□□ -0.51
TMEM260-211ENST00000556648 CLCN1P35523 988 aa11.85□□□□□ -0.51
TMEM260-211ENST00000556648 METAP2P50579 478 aaKnown RBP eCLIP11.85□□□□□ -0.51
TMEM260-211ENST00000556648 DYNLL1P63167 89 aaKnown RBP11.85□□□□□ -0.51
TMEM260-211ENST00000556648 TMEM67Q5HYA8 995 aa11.85□□□□□ -0.51
TMEM260-211ENST00000556648 RRP12Q5JTH9 1297 aaKnown RBP11.85□□□□□ -0.51
TMEM260-211ENST00000556648 APOA5Q6Q788 366 aa11.85□□□□□ -0.51
TMEM260-211ENST00000556648 MICU3Q86XE3 530 aa11.85□□□□□ -0.51
TMEM260-211ENST00000556648 GJD4Q96KN9 370 aaPredicted RBP11.85□□□□□ -0.51
TMEM260-211ENST00000556648 ZKSCAN3Q9BRR0 538 aa11.85□□□□□ -0.51
TMEM260-211ENST00000556648 CLSTN2Q9H4D0 955 aa11.85□□□□□ -0.51
TMEM260-211ENST00000556648 KIF3AQ9Y496 699 aa11.85□□□□□ -0.51
TMEM260-211ENST00000556648 MYH13Q9UKX3 1938 aa11.85□□□□□ -0.51
TMEM260-211ENST00000556648 CPLX1O14810 134 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 AP5Z1O43299 807 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 AKNAD1Q5T1N1 836 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 PHKBQ93100 1093 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 NYXQ9GZU5 481 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 FAM217BQ9NTX9 383 aaPredicted RBP11.84□□□□□ -0.51
TMEM260-211ENST00000556648 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.84□□□□□ -0.51
TMEM260-211ENST00000556648 ZSWIM5Q9P217 1185 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 CFAP45Q9UL16 551 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 MAGEB6P1A0A0J9YX57 407 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 RANBP6O60518 1105 aaKnown RBP11.84□□□□□ -0.51
TMEM260-211ENST00000556648 TM4SF1P30408 202 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 RPS8P62241 208 aaKnown RBP11.84□□□□□ -0.51
TMEM260-211ENST00000556648 MAP3K11Q16584 847 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 NFXL1Q6ZNB6 911 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 FAM196AQ6ZSG2 479 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 STAG1Q8WVM7 1258 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 NLRP3Q96P20 1036 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 LRRC4BQ9NT99 713 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 RCOR1Q9UKL0 485 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 JAG2Q9Y219 1238 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 MRVI1Q9Y6F6 885 aa11.84□□□□□ -0.51
TMEM260-211ENST00000556648 BAZ2AQ9UIF9 1905 aaKnown RBP11.84□□□□□ -0.51
TMEM260-211ENST00000556648 CYP2D7A0A087X1C5 515 aa11.83□□□□□ -0.52
TMEM260-211ENST00000556648 GOLGA8AA7E2F4 631 aa11.83□□□□□ -0.52
TMEM260-211ENST00000556648 IFIT3O14879 490 aaKnown RBP11.83□□□□□ -0.52
TMEM260-211ENST00000556648 RGL2O15211 777 aa11.83□□□□□ -0.52
TMEM260-211ENST00000556648 HSPA1LP34931 641 aa11.83□□□□□ -0.52
TMEM260-211ENST00000556648 EVX2Q03828 476 aa11.83□□□□□ -0.52
TMEM260-211ENST00000556648 TYRO3Q06418 890 aa11.83□□□□□ -0.52
TMEM260-211ENST00000556648 FBXO33Q7Z6M2 555 aa11.83□□□□□ -0.52
TMEM260-211ENST00000556648 ZSCAN30Q86W11 494 aa11.83□□□□□ -0.52
TMEM260-211ENST00000556648 VPS37DQ86XT2 251 aa11.83□□□□□ -0.52
TMEM260-211ENST00000556648 MPNDQ8N594 471 aa11.83□□□□□ -0.52
TMEM260-211ENST00000556648 FBXO18Q8NFZ0 1043 aa11.83□□□□□ -0.52
TMEM260-211ENST00000556648 TMEM87BQ96K49 555 aa11.83□□□□□ -0.52
TMEM260-211ENST00000556648 RIOK1Q9BRS2 568 aaKnown RBP11.83□□□□□ -0.52
TMEM260-211ENST00000556648 TNMDQ9H2S6 317 aa11.83□□□□□ -0.52
TMEM260-211ENST00000556648 GNL3LQ9NVN8 582 aaKnown RBP11.83□□□□□ -0.52
TMEM260-211ENST00000556648 CLIC4Q9Y696 253 aa11.83□□□□□ -0.52
TMEM260-211ENST00000556648 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.82□□□□□ -0.52
TMEM260-211ENST00000556648 DHX16O60231 1041 aaKnown RBP11.82□□□□□ -0.52
TMEM260-211ENST00000556648 POLR3DP05423 398 aaPredicted RBP11.82□□□□□ -0.52
TMEM260-211ENST00000556648 GNAT2P19087 354 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 PPARAQ07869 468 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 CAVIN4Q5BKX8 364 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 TXNRD3Q86VQ6 643 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 CCAR1Q8IX12 1150 aaKnown RBP11.82□□□□□ -0.52
TMEM260-211ENST00000556648 SEPT12Q8IYM1 358 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 ZNF396Q96N95 335 aaPredicted RBP11.82□□□□□ -0.52
TMEM260-211ENST00000556648 TOMM22Q9NS69 142 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 DDX19AQ9NUU7 478 aaKnown RBP11.82□□□□□ -0.52
TMEM260-211ENST00000556648 MINDY4BA8MYZ0 360 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 ZBTB43O43298 467 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 CCDC192P0DO97 292 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 KIF23Q02241 960 aaPredicted RBP11.82□□□□□ -0.52
TMEM260-211ENST00000556648 CHAF1AQ13111 956 aaPredicted RBP11.82□□□□□ -0.52
TMEM260-211ENST00000556648 NFIXQ14938 502 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 NTRK3Q16288 839 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 UVSSAQ2YD98 709 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 TPTE2Q6XPS3 522 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 MFSD6Q6ZSS7 791 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 SGMS1Q86VZ5 419 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 ALG1Q9BT22 464 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 NACAP1Q9BZK3 213 aa11.82□□□□□ -0.52
TMEM260-211ENST00000556648 DUOX1Q9NRD9 1551 aa11.81□□□□□ -0.52
TMEM260-211ENST00000556648 IRS2Q9Y4H2 1338 aa11.81□□□□□ -0.52
TMEM260-211ENST00000556648 RBM43Q6ZSC3 357 aaKnown RBP11.81□□□□□ -0.52
TMEM260-211ENST00000556648 CHMP4CQ96CF2 233 aa11.81□□□□□ -0.52
TMEM260-211ENST00000556648 MAST2Q6P0Q8 1798 aa11.81□□□□□ -0.52
TMEM260-211ENST00000556648 A0A087WWV3 80 aa11.81□□□□□ -0.52
TMEM260-211ENST00000556648 ADCY5O95622 1261 aa11.81□□□□□ -0.52
TMEM260-211ENST00000556648 RFC4P35249 363 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms