RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 SPATA31A3Q5VYP0 1347 aa17.07■□□□□ 0.32
CUX1-215ENST00000556210 CCDC196A0A1B0GTZ2 297 aa17.06■□□□□ 0.32
CUX1-215ENST00000556210 POLR2DO15514 142 aaKnown RBP17.06■□□□□ 0.32
CUX1-215ENST00000556210 PDE8BO95263 885 aa17.06■□□□□ 0.32
CUX1-215ENST00000556210 CACTINQ8WUQ7 758 aaKnown RBP17.06■□□□□ 0.32
CUX1-215ENST00000556210 WASF1Q92558 559 aa17.06■□□□□ 0.32
CUX1-215ENST00000556210 EEF2KMTQ96G04 330 aa17.06■□□□□ 0.32
CUX1-215ENST00000556210 ZNF609O15014 1411 aa17.06■□□□□ 0.32
CUX1-215ENST00000556210 FAM98CQ17RN3 349 aaKnown RBP17.06■□□□□ 0.32
CUX1-215ENST00000556210 FAM47AQ5JRC9 791 aa17.06■□□□□ 0.32
CUX1-215ENST00000556210 SYT10Q6XYQ8 523 aa17.06■□□□□ 0.32
CUX1-215ENST00000556210 TTLL11Q8NHH1 800 aa17.06■□□□□ 0.32
CUX1-215ENST00000556210 VPS54Q9P1Q0 977 aa17.06■□□□□ 0.32
CUX1-215ENST00000556210 MAGEB6P1A0A0J9YX57 407 aa17.06■□□□□ 0.32
CUX1-215ENST00000556210 PCCAP05165 728 aaPredicted RBP17.06■□□□□ 0.32
CUX1-215ENST00000556210 RFX5P48382 616 aaPredicted RBP17.06■□□□□ 0.32
CUX1-215ENST00000556210 IKQ13123 557 aaPredicted RBP17.06■□□□□ 0.32
CUX1-215ENST00000556210 TMX4Q9H1E5 349 aaPredicted RBP17.06■□□□□ 0.32
CUX1-215ENST00000556210 ZHX3Q9H4I2 956 aa17.06■□□□□ 0.32
CUX1-215ENST00000556210 ARGLU1Q9NWB6 273 aaPredicted RBP17.06■□□□□ 0.32
CUX1-215ENST00000556210 FBXO18Q8NFZ0 1043 aa17.05■□□□□ 0.32
CUX1-215ENST00000556210 SMARCE1Q969G3 411 aa17.05■□□□□ 0.32
CUX1-215ENST00000556210 XPO4Q9C0E2 1151 aaKnown RBP17.05■□□□□ 0.32
CUX1-215ENST00000556210 AATFQ9NY61 560 aaKnown RBP eCLIP17.05■□□□□ 0.323e-6■■■□□ 18.2
CUX1-215ENST00000556210 GOLPH3LQ9H4A5 285 aa17.05■□□□□ 0.32
CUX1-215ENST00000556210 PFKFB1P16118 471 aa17.05■□□□□ 0.32
CUX1-215ENST00000556210 LPIN2Q92539 896 aa17.05■□□□□ 0.32
CUX1-215ENST00000556210 TRERF1Q96PN7 1200 aa17.05■□□□□ 0.32
CUX1-215ENST00000556210 RNF41Q9H4P4 317 aaPredicted RBP17.05■□□□□ 0.32
CUX1-215ENST00000556210 DMTNQ08495 405 aa17.05■□□□□ 0.32
CUX1-215ENST00000556210 NAA30Q147X3 362 aaPredicted RBP17.05■□□□□ 0.32
CUX1-215ENST00000556210 TEX35Q5T0J7 233 aa17.05■□□□□ 0.32
CUX1-215ENST00000556210 IFNL3Q8IZI9 196 aa17.05■□□□□ 0.32
CUX1-215ENST00000556210 ESR2Q92731 530 aa17.05■□□□□ 0.32
CUX1-215ENST00000556210 MCM9Q9NXL9 1143 aa17.05■□□□□ 0.32
CUX1-215ENST00000556210 CARMIL3Q8ND23 1372 aa17.04■□□□□ 0.32
CUX1-215ENST00000556210 MAP3K15Q6ZN16 1313 aa17.04■□□□□ 0.32
CUX1-215ENST00000556210 UBE2Q2LH0YL09 131 aa17.04■□□□□ 0.32
CUX1-215ENST00000556210 ERCC3P19447 782 aa17.04■□□□□ 0.32
CUX1-215ENST00000556210 ZNF274Q96GC6 653 aaPredicted RBP17.04■□□□□ 0.32
CUX1-215ENST00000556210 CARD10Q9BWT7 1032 aa17.04■□□□□ 0.32
CUX1-215ENST00000556210 RNF216Q9NWF9 866 aaPredicted RBP17.04■□□□□ 0.32
CUX1-215ENST00000556210 MCM7P33993 719 aa17.04■□□□□ 0.32
CUX1-215ENST00000556210 FILIP1LQ4L180 1135 aa17.04■□□□□ 0.32
CUX1-215ENST00000556210 GRAMD1CQ8IYS0 662 aa17.04■□□□□ 0.32
CUX1-215ENST00000556210 VWA3AA6NCI4 1184 aa17.03■□□□□ 0.32
CUX1-215ENST00000556210 KRT23Q9C075 422 aa17.03■□□□□ 0.32
CUX1-215ENST00000556210 ATG3Q9NT62 314 aa17.03■□□□□ 0.32
CUX1-215ENST00000556210 KCNH3Q9ULD8 1083 aa17.03■□□□□ 0.32
CUX1-215ENST00000556210 NAP1L1P55209 391 aaKnown RBP17.03■□□□□ 0.32
CUX1-215ENST00000556210 NR5A1Q13285 461 aa17.03■□□□□ 0.32
CUX1-215ENST00000556210 KARSQ15046 597 aaKnown RBP17.03■□□□□ 0.32
CUX1-215ENST00000556210 UBXN4Q92575 508 aa17.03■□□□□ 0.32
CUX1-215ENST00000556210 C6orf229H3BNL8 230 aa17.03■□□□□ 0.32
CUX1-215ENST00000556210 FEZ1Q99689 392 aa17.03■□□□□ 0.32
CUX1-215ENST00000556210 SENP2Q9HC62 589 aa17.03■□□□□ 0.32
CUX1-215ENST00000556210 OGFRQ9NZT2 677 aa17.03■□□□□ 0.32
CUX1-215ENST00000556210 GNG11P61952 73 aa17.02■□□□□ 0.32
CUX1-215ENST00000556210 ZSWIM5Q9P217 1185 aa17.02■□□□□ 0.32
CUX1-215ENST00000556210 KIAA1468Q9P260 1216 aa17.02■□□□□ 0.32
CUX1-215ENST00000556210 TXLNAP40222 546 aa17.02■□□□□ 0.32
CUX1-215ENST00000556210 SETDB2Q96T68 719 aa17.02■□□□□ 0.32
CUX1-215ENST00000556210 AP5Z1O43299 807 aa17.02■□□□□ 0.31
CUX1-215ENST00000556210 CBFA2T2O43439 604 aa17.02■□□□□ 0.31
CUX1-215ENST00000556210 BRAPQ7Z569 592 aa17.02■□□□□ 0.31
CUX1-215ENST00000556210 TBC1D10CQ8IV04 446 aa17.02■□□□□ 0.31
CUX1-215ENST00000556210 KRT222Q8N1A0 295 aa17.02■□□□□ 0.31
CUX1-215ENST00000556210 NLRP3Q96P20 1036 aa17.02■□□□□ 0.31
CUX1-215ENST00000556210 SAP30BPQ9UHR5 308 aaKnown RBP17.02■□□□□ 0.31
CUX1-215ENST00000556210 KIF20AO95235 890 aa17.01■□□□□ 0.31
CUX1-215ENST00000556210 ENOX2Q16206 610 aaKnown RBP17.01■□□□□ 0.31
CUX1-215ENST00000556210 APOA5Q6Q788 366 aa17.01■□□□□ 0.31
CUX1-215ENST00000556210 IPO7O95373 1038 aaKnown RBP17.01■□□□□ 0.31
CUX1-215ENST00000556210 RBM5P52756 815 aaKnown RBP eCLIP17.01■□□□□ 0.315e-8■■■□□ 16.8
CUX1-215ENST00000556210 RASGRF1Q13972 1273 aa17.01■□□□□ 0.31
CUX1-215ENST00000556210 SUSD4Q5VX71 490 aa17.01■□□□□ 0.31
CUX1-215ENST00000556210 ADALQ6DHV7 355 aa17.01■□□□□ 0.31
CUX1-215ENST00000556210 ZNF444Q8N0Y2 327 aaPredicted RBP17.01■□□□□ 0.31
CUX1-215ENST00000556210 C1orf167Q5SNV9 1468 aa17.01■□□□□ 0.31
CUX1-215ENST00000556210 ITSN1Q15811 1721 aa17.01■□□□□ 0.31
CUX1-215ENST00000556210 USP17L12C9JPN9 530 aa17.01■□□□□ 0.31
CUX1-215ENST00000556210 USP17L21D6R901 530 aa17.01■□□□□ 0.31
CUX1-215ENST00000556210 GNPATO15228 680 aa17.01■□□□□ 0.31
CUX1-215ENST00000556210 DYNLL1P63167 89 aaKnown RBP17.01■□□□□ 0.31
CUX1-215ENST00000556210 LCORLQ8N3X6 602 aa17.01■□□□□ 0.31
CUX1-215ENST00000556210 TMEM87AQ8NBN3 555 aa17.01■□□□□ 0.31
CUX1-215ENST00000556210 CCDC87Q9NVE4 849 aa17.01■□□□□ 0.31
CUX1-215ENST00000556210 RABL6Q3YEC7 729 aaPredicted RBP17■□□□□ 0.31
CUX1-215ENST00000556210 CYB5R4Q7L1T6 521 aa17■□□□□ 0.31
CUX1-215ENST00000556210 POLR3GO15318 223 aaPredicted RBP17■□□□□ 0.31
CUX1-215ENST00000556210 ATP1A3P13637 1013 aa17■□□□□ 0.31
CUX1-215ENST00000556210 AKNAD1Q5T1N1 836 aa17■□□□□ 0.31
CUX1-215ENST00000556210 SIPA1L2Q9P2F8 1722 aaPredicted RBP17■□□□□ 0.31
CUX1-215ENST00000556210 MPHOSPH10O00566 681 aaKnown RBP17■□□□□ 0.31
CUX1-215ENST00000556210 NEMFO60524 1076 aa17■□□□□ 0.31
CUX1-215ENST00000556210 CRKLP46109 303 aaKnown RBP17■□□□□ 0.31
CUX1-215ENST00000556210 FANCCQ00597 558 aa17■□□□□ 0.31
CUX1-215ENST00000556210 CCDC144BQ3MJ40 725 aa17■□□□□ 0.31
CUX1-215ENST00000556210 TRMT1LQ7Z2T5 733 aaKnown RBP17■□□□□ 0.31
CUX1-215ENST00000556210 ZSCAN29Q8IWY8 852 aaPredicted RBP17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms