RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 SPTY2D1Q68D10 685 aaPredicted RBP17.36■□□□□ 0.37
VPS33B-205ENST00000556096 ZNF804AQ7Z570 1209 aa17.36■□□□□ 0.37
VPS33B-205ENST00000556096 ADGRA1Q86SQ6 560 aa17.36■□□□□ 0.37
VPS33B-205ENST00000556096 NSUN4Q96CB9 384 aaKnown RBP17.36■□□□□ 0.37
VPS33B-205ENST00000556096 RIOK1Q9BRS2 568 aaKnown RBP17.36■□□□□ 0.37
VPS33B-205ENST00000556096 GGA1Q9UJY5 639 aa17.36■□□□□ 0.37
VPS33B-205ENST00000556096 PPEF1O14829 653 aaPredicted RBP17.35■□□□□ 0.37
VPS33B-205ENST00000556096 DEKP35659 375 aaKnown RBP17.35■□□□□ 0.37
VPS33B-205ENST00000556096 APOBRQ0VD83 1088 aa17.35■□□□□ 0.37
VPS33B-205ENST00000556096 TBC1D10CQ8IV04 446 aa17.35■□□□□ 0.37
VPS33B-205ENST00000556096 SP8Q8IXZ3 490 aa17.35■□□□□ 0.37
VPS33B-205ENST00000556096 MIGA1Q8NAN2 632 aa17.35■□□□□ 0.37
VPS33B-205ENST00000556096 WDR66Q8TBY9 1149 aa17.35■□□□□ 0.37
VPS33B-205ENST00000556096 ZNF384Q8TF68 577 aa17.35■□□□□ 0.37
VPS33B-205ENST00000556096 NSFL1CQ9UNZ2 370 aaKnown RBP17.35■□□□□ 0.37
VPS33B-205ENST00000556096 BCS1LQ9Y276 419 aa17.35■□□□□ 0.37
VPS33B-205ENST00000556096 PRKAB2O43741 272 aa17.35■□□□□ 0.37
VPS33B-205ENST00000556096 ALDH1B1P30837 517 aa17.35■□□□□ 0.37
VPS33B-205ENST00000556096 ANTXR2P58335 489 aa17.35■□□□□ 0.37
VPS33B-205ENST00000556096 SCRN1Q12765 414 aa17.35■□□□□ 0.37
VPS33B-205ENST00000556096 FOXD4L5Q5VV16 416 aaPredicted RBP17.35■□□□□ 0.37
VPS33B-205ENST00000556096 OLFM4Q6UX06 510 aa17.35■□□□□ 0.37
VPS33B-205ENST00000556096 FOXD4L4Q8WXT5 416 aaPredicted RBP17.35■□□□□ 0.37
VPS33B-205ENST00000556096 LMBRD1Q9NUN5 540 aa17.35■□□□□ 0.37
VPS33B-205ENST00000556096 PIM2Q9P1W9 311 aa17.35■□□□□ 0.37
VPS33B-205ENST00000556096 PDIA3P30101 505 aaKnown RBP17.34■□□□□ 0.37
VPS33B-205ENST00000556096 MECOMQ03112 1051 aa17.34■□□□□ 0.37
VPS33B-205ENST00000556096 CHAF1AQ13111 956 aaPredicted RBP17.34■□□□□ 0.37
VPS33B-205ENST00000556096 STYK1Q6J9G0 422 aa17.34■□□□□ 0.37
VPS33B-205ENST00000556096 CHST3Q7LGC8 479 aa17.34■□□□□ 0.37
VPS33B-205ENST00000556096 SMARCC2Q8TAQ2 1214 aa17.34■□□□□ 0.37
VPS33B-205ENST00000556096 CNNM2Q9H8M5 875 aa17.34■□□□□ 0.37
VPS33B-205ENST00000556096 MTMR6Q9Y217 621 aa17.34■□□□□ 0.37
VPS33B-205ENST00000556096 UTRNP46939 3433 aa17.34■□□□□ 0.37
VPS33B-205ENST00000556096 BRCA1P38398 1863 aaKnown RBP17.34■□□□□ 0.37
VPS33B-205ENST00000556096 TIAM2Q8IVF5 1701 aa17.33■□□□□ 0.37
VPS33B-205ENST00000556096 UFL1O94874 794 aa17.33■□□□□ 0.37
VPS33B-205ENST00000556096 F13A1P00488 732 aa17.33■□□□□ 0.37
VPS33B-205ENST00000556096 TDO2P48775 406 aa17.33■□□□□ 0.37
VPS33B-205ENST00000556096 LARP1BQ659C4 914 aaKnown RBP17.33■□□□□ 0.37
VPS33B-205ENST00000556096 GIMAP6Q6P9H5 292 aa17.33■□□□□ 0.37
VPS33B-205ENST00000556096 ATP6V1DQ9Y5K8 247 aa17.33■□□□□ 0.37
VPS33B-205ENST00000556096 YBX3P16989 372 aaKnown RBP eCLIP17.33■□□□□ 0.36
VPS33B-205ENST00000556096 AKNAD1Q5T1N1 836 aa17.33■□□□□ 0.36
VPS33B-205ENST00000556096 TTLL6Q8N841 843 aa17.33■□□□□ 0.36
VPS33B-205ENST00000556096 STAG1Q8WVM7 1258 aa17.33■□□□□ 0.36
VPS33B-205ENST00000556096 ANAPC4Q9UJX5 808 aa17.33■□□□□ 0.36
VPS33B-205ENST00000556096 ATP6V0A2Q9Y487 856 aa17.33■□□□□ 0.36
VPS33B-205ENST00000556096 MAST2Q6P0Q8 1798 aa17.32■□□□□ 0.36
VPS33B-205ENST00000556096 IL1R1P14778 569 aa17.32■□□□□ 0.36
VPS33B-205ENST00000556096 PRDX5P30044 214 aa17.32■□□□□ 0.36
VPS33B-205ENST00000556096 KLHL40Q2TBA0 621 aa17.32■□□□□ 0.36
VPS33B-205ENST00000556096 DALRD3Q5D0E6 543 aaKnown RBP17.32■□□□□ 0.36
VPS33B-205ENST00000556096 TBC1D16Q8TBP0 767 aa17.32■□□□□ 0.36
VPS33B-205ENST00000556096 TMEM87BQ96K49 555 aa17.32■□□□□ 0.36
VPS33B-205ENST00000556096 KRT23Q9C075 422 aa17.32■□□□□ 0.36
VPS33B-205ENST00000556096 CD209Q9NNX6 404 aa17.32■□□□□ 0.36
VPS33B-205ENST00000556096 C21orf2O43822 256 aa17.31■□□□□ 0.36
VPS33B-205ENST00000556096 HMGN5P82970 282 aaKnown RBP17.31■□□□□ 0.36
VPS33B-205ENST00000556096 CYB5R4Q7L1T6 521 aa17.31■□□□□ 0.36
VPS33B-205ENST00000556096 RNF41Q9H4P4 317 aaPredicted RBP17.31■□□□□ 0.36
VPS33B-205ENST00000556096 POLLQ9UGP5 575 aa17.31■□□□□ 0.36
VPS33B-205ENST00000556096 DUOX1Q9NRD9 1551 aa17.31■□□□□ 0.36
VPS33B-205ENST00000556096 CCDC88AQ3V6T2 1871 aa17.3■□□□□ 0.36
VPS33B-205ENST00000556096 PRPF40AO75400 957 aaKnown RBP17.3■□□□□ 0.36
VPS33B-205ENST00000556096 DYNLL1P63167 89 aaKnown RBP17.3■□□□□ 0.36
VPS33B-205ENST00000556096 CTDSPL2Q05D32 466 aa17.3■□□□□ 0.36
VPS33B-205ENST00000556096 GPR162Q16538 588 aa17.3■□□□□ 0.36
VPS33B-205ENST00000556096 MFSD6Q6ZSS7 791 aa17.3■□□□□ 0.36
VPS33B-205ENST00000556096 NSUN7Q8NE18 718 aaKnown RBP17.3■□□□□ 0.36
VPS33B-205ENST00000556096 CNKSR1Q969H4 720 aa17.3■□□□□ 0.36
VPS33B-205ENST00000556096 MTA3Q9BTC8 594 aa17.3■□□□□ 0.36
VPS33B-205ENST00000556096 ANGEL1Q9UNK9 670 aaKnown RBP17.3■□□□□ 0.36
VPS33B-205ENST00000556096 NEDD4P46934 1319 aa17.3■□□□□ 0.36
VPS33B-205ENST00000556096 B4E1Z4 1266 aa17.3■□□□□ 0.36
VPS33B-205ENST00000556096 SH2B2O14492 632 aaPredicted RBP17.3■□□□□ 0.36
VPS33B-205ENST00000556096 JAK2O60674 1132 aa17.3■□□□□ 0.36
VPS33B-205ENST00000556096 LDHBP07195 334 aaKnown RBP17.3■□□□□ 0.36
VPS33B-205ENST00000556096 PPARAQ07869 468 aa17.3■□□□□ 0.36
VPS33B-205ENST00000556096 SDR42E1Q8WUS8 393 aa17.3■□□□□ 0.36
VPS33B-205ENST00000556096 GPR101Q96P66 508 aaPredicted RBP17.3■□□□□ 0.36
VPS33B-205ENST00000556096 GPHNQ9NQX3 736 aaPredicted RBP17.3■□□□□ 0.36
VPS33B-205ENST00000556096 KIF3AQ9Y496 699 aa17.3■□□□□ 0.36
VPS33B-205ENST00000556096 DDX49Q9Y6V7 483 aaKnown RBP17.3■□□□□ 0.36
VPS33B-205ENST00000556096 KLF18A0A0U1RQI7 1052 aa17.29■□□□□ 0.36
VPS33B-205ENST00000556096 CTDNEP1O95476 244 aa17.29■□□□□ 0.36
VPS33B-205ENST00000556096 GSTO1P78417 241 aa17.29■□□□□ 0.36
VPS33B-205ENST00000556096 DZIP1Q86YF9 867 aaKnown RBP17.29■□□□□ 0.36
VPS33B-205ENST00000556096 IGDCC4Q8TDY8 1250 aa17.29■□□□□ 0.36
VPS33B-205ENST00000556096 CRNKL1Q9BZJ0 848 aaKnown RBP17.29■□□□□ 0.36
VPS33B-205ENST00000556096 BRPF3Q9ULD4 1205 aa17.29■□□□□ 0.36
VPS33B-205ENST00000556096 TACC3Q9Y6A5 838 aa17.29■□□□□ 0.36
VPS33B-205ENST00000556096 VPS37CA5D8V6 355 aaPredicted RBP17.28■□□□□ 0.36
VPS33B-205ENST00000556096 DHX16O60231 1041 aaKnown RBP17.28■□□□□ 0.36
VPS33B-205ENST00000556096 LIFRP42702 1097 aa17.28■□□□□ 0.36
VPS33B-205ENST00000556096 CCT2P78371 535 aaKnown RBP17.28■□□□□ 0.36
VPS33B-205ENST00000556096 TMEM87AQ8NBN3 555 aa17.28■□□□□ 0.36
VPS33B-205ENST00000556096 CHAMP1Q96JM3 812 aa17.28■□□□□ 0.36
VPS33B-205ENST00000556096 ATP8A2Q9NTI2 1148 aa17.28■□□□□ 0.36
VPS33B-205ENST00000556096 ZSWIM5Q9P217 1185 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms