RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 ZKSCAN5Q9Y2L8 839 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 FAM169AQ9Y6X4 670 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 SSH2Q76I76 1423 aa12.04□□□□□ -0.48
ACTN1-216ENST00000556083 GIGYF1O75420 1035 aaPredicted RBP12.03□□□□□ -0.48
ACTN1-216ENST00000556083 HCLS1P14317 486 aaPredicted RBP12.03□□□□□ -0.48
ACTN1-216ENST00000556083 CHMP4BP1P59074 171 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 TYRO3Q06418 890 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 RAB3GAP1Q15042 981 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 VTI1AQ96AJ9 217 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 NT5C3AQ9H0P0 336 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 TRMT1Q9NXH9 659 aaKnown RBP12.03□□□□□ -0.48
ACTN1-216ENST00000556083 ANGEL1Q9UNK9 670 aaKnown RBP12.03□□□□□ -0.48
ACTN1-216ENST00000556083 KIF21AQ7Z4S6 1674 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 FAM83GA6ND36 823 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 AFMP43652 599 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 TAOK1Q7L7X3 1001 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 USP48Q86UV5 1035 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 RPGRIP1Q96KN7 1286 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 ABCD1P33897 745 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 TAF12Q16514 161 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 MAGEB6Q8N7X4 407 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 C8orf58Q8NAV2 365 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 USH1CQ9Y6N9 552 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 PLXNC1O60486 1568 aa12.03□□□□□ -0.48
ACTN1-216ENST00000556083 ZNF608Q9ULD9 1512 aaPredicted RBP12.03□□□□□ -0.48
ACTN1-216ENST00000556083 NOLC1Q14978 699 aaKnown RBP eCLIP12.02□□□□□ -0.48
ACTN1-216ENST00000556083 MAP7D1Q3KQU3 841 aa12.02□□□□□ -0.48
ACTN1-216ENST00000556083 ZNF790Q6PG37 636 aa12.02□□□□□ -0.48
ACTN1-216ENST00000556083 CCDC144CPQ8IYA2 1237 aa12.02□□□□□ -0.48
ACTN1-216ENST00000556083 DHX58Q96C10 678 aa12.02□□□□□ -0.48
ACTN1-216ENST00000556083 EYA1Q99502 592 aa12.02□□□□□ -0.48
ACTN1-216ENST00000556083 RTEL1Q9NZ71 1219 aa12.02□□□□□ -0.48
ACTN1-216ENST00000556083 SWAP70Q9UH65 585 aa12.02□□□□□ -0.48
ACTN1-216ENST00000556083 KIAA0556O60303 1618 aa12.02□□□□□ -0.48
ACTN1-216ENST00000556083 ADGRL2O95490 1459 aa12.02□□□□□ -0.48
ACTN1-216ENST00000556083 CLCN1P35523 988 aa12.02□□□□□ -0.48
ACTN1-216ENST00000556083 PPM1FP49593 454 aaPredicted RBP12.02□□□□□ -0.48
ACTN1-216ENST00000556083 INF2Q27J81 1249 aa12.02□□□□□ -0.48
ACTN1-216ENST00000556083 MKRN1Q9UHC7 482 aaKnown RBP12.02□□□□□ -0.48
ACTN1-216ENST00000556083 FAM184BQ9ULE4 1060 aa12.02□□□□□ -0.48
ACTN1-216ENST00000556083 NEO1Q92859 1461 aa12.02□□□□□ -0.49
ACTN1-216ENST00000556083 EIF6P56537 245 aaKnown RBP12.02□□□□□ -0.49
ACTN1-216ENST00000556083 SETDB1Q15047 1291 aa12.02□□□□□ -0.49
ACTN1-216ENST00000556083 GSTA5Q7RTV2 222 aa12.02□□□□□ -0.49
ACTN1-216ENST00000556083 SYCE1Q8N0S2 351 aa12.02□□□□□ -0.49
ACTN1-216ENST00000556083 NFATC2IPQ8NCF5 419 aa12.02□□□□□ -0.49
ACTN1-216ENST00000556083 GOLGA5Q8TBA6 731 aa12.02□□□□□ -0.49
ACTN1-216ENST00000556083 IVNS1ABPQ9Y6Y0 642 aa12.02□□□□□ -0.49
ACTN1-216ENST00000556083 BACH1O14867 736 aa12.02□□□□□ -0.49
ACTN1-216ENST00000556083 ZBED4O75132 1171 aa12.02□□□□□ -0.49
ACTN1-216ENST00000556083 TRIM37O94972 964 aa12.02□□□□□ -0.49
ACTN1-216ENST00000556083 DNM2P50570 870 aa12.02□□□□□ -0.49
ACTN1-216ENST00000556083 LGSNQ5TDP6 509 aa12.02□□□□□ -0.49
ACTN1-216ENST00000556083 CCDC51Q96ER9 411 aa12.02□□□□□ -0.49
ACTN1-216ENST00000556083 KDM3AQ9Y4C1 1321 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 GMNNO75496 209 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 MRPS9P82933 396 aaKnown RBP12.01□□□□□ -0.49
ACTN1-216ENST00000556083 UBXN1Q04323 297 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 STRN3Q13033 797 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 PABPC4Q13310 644 aaKnown RBP eCLIP12.01□□□□□ -0.496e-7■■□□□ 13.6
ACTN1-216ENST00000556083 MAK16Q9BXY0 300 aaKnown RBP12.01□□□□□ -0.49
ACTN1-216ENST00000556083 STIM2Q9P246 746 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 AKR1B15C9JRZ8 316 aaPredicted RBP12.01□□□□□ -0.49
ACTN1-216ENST00000556083 AOPEPQ8N6M6 819 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 UBL4BQ8N7F7 174 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 SLC17A8Q8NDX2 589 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 COL17A1Q9UMD9 1497 aaPredicted RBP12.01□□□□□ -0.49
ACTN1-216ENST00000556083 PLEKHG3A1L390 1219 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 IGHDP01880 384 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 P4HA1P13674 534 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 KIF11P52732 1056 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 PPP1R2P3Q6NXS1 205 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 KBTBD3Q8NAB2 608 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 DDX23Q9BUQ8 820 aaKnown RBP12.01□□□□□ -0.49
ACTN1-216ENST00000556083 DSCC1Q9BVC3 393 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 CCDC87Q9NVE4 849 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.01□□□□□ -0.49
ACTN1-216ENST00000556083 RPS6KB1P23443 525 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 NONOQ15233 471 aaKnown RBP eCLIP12.01□□□□□ -0.49
ACTN1-216ENST00000556083 SRGAP1Q7Z6B7 1085 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 CHURC1Q8WUH1 139 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 PANK2Q9BZ23 570 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 AS3MTQ9HBK9 375 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 ARPP21Q9UBL0 812 aaPredicted RBP12.01□□□□□ -0.49
ACTN1-216ENST00000556083 DNAI1Q9UI46 699 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 TPCN1Q9ULQ1 816 aa12.01□□□□□ -0.49
ACTN1-216ENST00000556083 CHL1O00533 1208 aa12□□□□□ -0.49
ACTN1-216ENST00000556083 ERCC5P28715 1186 aaPredicted RBP12□□□□□ -0.49
ACTN1-216ENST00000556083 VEZTQ9HBM0 779 aa12□□□□□ -0.49
ACTN1-216ENST00000556083 CLEC11AQ9Y240 323 aa12□□□□□ -0.49
ACTN1-216ENST00000556083 EEF2P13639 858 aaKnown RBP12□□□□□ -0.49
ACTN1-216ENST00000556083 PICALMQ13492 652 aa12□□□□□ -0.49
ACTN1-216ENST00000556083 ARHGEF6Q15052 776 aa12□□□□□ -0.49
ACTN1-216ENST00000556083 CCDC6Q16204 474 aa12□□□□□ -0.49
ACTN1-216ENST00000556083 GIMAP6Q6P9H5 292 aa12□□□□□ -0.49
ACTN1-216ENST00000556083 CCDC186Q7Z3E2 898 aa12□□□□□ -0.49
ACTN1-216ENST00000556083 TMTC1Q8IUR5 882 aa12□□□□□ -0.49
ACTN1-216ENST00000556083 SBNO2Q9Y2G9 1366 aa12□□□□□ -0.49
ACTN1-216ENST00000556083 MAP3K19Q56UN5 1328 aa12□□□□□ -0.49
ACTN1-216ENST00000556083 AK2P54819 239 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms