RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 FMNL2Q96PY5 1086 aa8.13□□□□□ -1.11
SCFD1-217ENST00000555953 CSRNP1Q96S65 589 aa8.13□□□□□ -1.11
SCFD1-217ENST00000555953 RBCK1Q9BYM8 510 aa8.13□□□□□ -1.11
SCFD1-217ENST00000555953 GOLGA2P5Q9HBQ8 144 aa8.13□□□□□ -1.11
SCFD1-217ENST00000555953 PPP1R9AQ9ULJ8 1098 aa8.13□□□□□ -1.11
SCFD1-217ENST00000555953 ZNF157P51786 506 aaPredicted RBP8.12□□□□□ -1.11
SCFD1-217ENST00000555953 SEZ6L2Q6UXD5 910 aa8.12□□□□□ -1.11
SCFD1-217ENST00000555953 ZNF765Q7L2R6 523 aa8.12□□□□□ -1.11
SCFD1-217ENST00000555953 CCER1Q8TC90 406 aaPredicted RBP8.12□□□□□ -1.11
SCFD1-217ENST00000555953 ALKBH8Q96BT7 664 aaKnown RBP8.12□□□□□ -1.11
SCFD1-217ENST00000555953 DMRTB1Q96MA1 342 aa8.12□□□□□ -1.11
SCFD1-217ENST00000555953 SUPT5HO00267 1087 aaKnown RBP8.11□□□□□ -1.11
SCFD1-217ENST00000555953 VSIG10LQ86VR7 867 aa8.11□□□□□ -1.11
SCFD1-217ENST00000555953 WDR89Q96FK6 387 aaPredicted RBP8.11□□□□□ -1.11
SCFD1-217ENST00000555953 CCDC86Q9H6F5 360 aaKnown RBP8.11□□□□□ -1.11
SCFD1-217ENST00000555953 C1GALT1Q9NS00 363 aa8.11□□□□□ -1.11
SCFD1-217ENST00000555953 TRAK1Q9UPV9 953 aa8.11□□□□□ -1.11
SCFD1-217ENST00000555953 DAGLAQ9Y4D2 1042 aa8.11□□□□□ -1.11
SCFD1-217ENST00000555953 SYNGAP1Q96PV0 1343 aa8.1□□□□□ -1.11
SCFD1-217ENST00000555953 SOWAHDA6NJG2 315 aa8.1□□□□□ -1.11
SCFD1-217ENST00000555953 LIG1P18858 919 aa8.1□□□□□ -1.11
SCFD1-217ENST00000555953 PI16Q6UXB8 463 aa8.1□□□□□ -1.11
SCFD1-217ENST00000555953 ZC3H12CQ9C0D7 883 aaKnown RBP8.1□□□□□ -1.11
SCFD1-217ENST00000555953 LGR6Q9HBX8 967 aa8.1□□□□□ -1.11
SCFD1-217ENST00000555953 BSDC1Q9NW68 430 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-217ENST00000555953 TMPRSS2O15393 492 aa8.09□□□□□ -1.11
SCFD1-217ENST00000555953 CYP27A1Q02318 531 aa8.09□□□□□ -1.11
SCFD1-217ENST00000555953 DUSP27Q5VZP5 1158 aa8.09□□□□□ -1.11
SCFD1-217ENST00000555953 LRRC4CQ9HCJ2 640 aa8.09□□□□□ -1.11
SCFD1-217ENST00000555953 ZC3H7BQ9UGR2 993 aaKnown RBP8.09□□□□□ -1.11
SCFD1-217ENST00000555953 ZNF862O60290 1169 aa8.08□□□□□ -1.12
SCFD1-217ENST00000555953 TMC7Q7Z402 723 aa8.08□□□□□ -1.12
SCFD1-217ENST00000555953 CRIM1Q9NZV1 1036 aa8.08□□□□□ -1.12
SCFD1-217ENST00000555953 RNF114Q9Y508 228 aa8.08□□□□□ -1.12
SCFD1-217ENST00000555953 GSTP1P09211 210 aaKnown RBP8.07□□□□□ -1.12
SCFD1-217ENST00000555953 TXKP42681 527 aa8.07□□□□□ -1.12
SCFD1-217ENST00000555953 FCGRTP55899 365 aa8.07□□□□□ -1.12
SCFD1-217ENST00000555953 PDE4CQ08493 712 aa8.07□□□□□ -1.12
SCFD1-217ENST00000555953 DTHD1Q6ZMT9 781 aa8.07□□□□□ -1.12
SCFD1-217ENST00000555953 FBXL18Q96ME1 805 aa8.07□□□□□ -1.12
SCFD1-217ENST00000555953 COL19A1Q14993 1142 aa8.06□□□□□ -1.12
SCFD1-217ENST00000555953 KIF4BQ2VIQ3 1234 aa8.06□□□□□ -1.12
SCFD1-217ENST00000555953 OGFOD3Q6PK18 319 aa8.06□□□□□ -1.12
SCFD1-217ENST00000555953 TP53INP2Q8IXH6 220 aa8.06□□□□□ -1.12
SCFD1-217ENST00000555953 FANCD2OSQ96PS1 177 aa8.06□□□□□ -1.12
SCFD1-217ENST00000555953 GPN3Q9UHW5 284 aaPredicted RBP8.06□□□□□ -1.12
SCFD1-217ENST00000555953 PCDHGC5Q9Y5F6 944 aa8.06□□□□□ -1.12
SCFD1-217ENST00000555953 ID3Q02535 119 aa8.05□□□□□ -1.12
SCFD1-217ENST00000555953 CBLL1Q75N03 491 aa8.05□□□□□ -1.12
SCFD1-217ENST00000555953 PDZD3Q86UT5 571 aa8.05□□□□□ -1.12
SCFD1-217ENST00000555953 FLCNQ8NFG4 579 aa8.05□□□□□ -1.12
SCFD1-217ENST00000555953 BCO2Q9BYV7 579 aa8.05□□□□□ -1.12
SCFD1-217ENST00000555953 PAK6Q9NQU5 681 aaPredicted RBP8.05□□□□□ -1.12
SCFD1-217ENST00000555953 DISC1Q9NRI5 854 aa8.05□□□□□ -1.12
SCFD1-217ENST00000555953 TMEM39AQ9NV64 488 aa8.05□□□□□ -1.12
SCFD1-217ENST00000555953 NLRP2Q9NX02 1062 aa8.05□□□□□ -1.12
SCFD1-217ENST00000555953 BIN2Q9UBW5 565 aaPredicted RBP8.05□□□□□ -1.12
SCFD1-217ENST00000555953 DCTN4Q9UJW0 460 aa8.05□□□□□ -1.12
SCFD1-217ENST00000555953 GNEQ9Y223 722 aaKnown RBP8.05□□□□□ -1.12
SCFD1-217ENST00000555953 SLFN14P0C7P3 912 aa8.04□□□□□ -1.12
SCFD1-217ENST00000555953 CDK5R2Q13319 367 aa8.04□□□□□ -1.12
SCFD1-217ENST00000555953 DSC3Q14574 896 aa8.04□□□□□ -1.12
SCFD1-217ENST00000555953 STK35Q8TDR2 534 aa8.04□□□□□ -1.12
SCFD1-217ENST00000555953 ATXN3LQ9H3M9 355 aa8.04□□□□□ -1.12
SCFD1-217ENST00000555953 PIDD1Q9HB75 910 aa8.04□□□□□ -1.12
SCFD1-217ENST00000555953 KRT82Q9NSB4 513 aa8.04□□□□□ -1.12
SCFD1-217ENST00000555953 PPP2R3AQ06190 1150 aa8.03□□□□□ -1.12
SCFD1-217ENST00000555953 PNMA6FA0A0J9YX94 578 aa8.02□□□□□ -1.13
SCFD1-217ENST00000555953 FAM87AP0C7U9 286 aa8.02□□□□□ -1.13
SCFD1-217ENST00000555953 XRCC5P13010 732 aaKnown RBP8.02□□□□□ -1.13
SCFD1-217ENST00000555953 TTLL4Q14679 1199 aa8.02□□□□□ -1.13
SCFD1-217ENST00000555953 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.02□□□□□ -1.13
SCFD1-217ENST00000555953 NXPE4Q6UWF7 544 aa8.02□□□□□ -1.13
SCFD1-217ENST00000555953 SULF2Q8IWU5 870 aa8.02□□□□□ -1.13
SCFD1-217ENST00000555953 KCNB2Q92953 911 aa8.02□□□□□ -1.13
SCFD1-217ENST00000555953 PPP4R2Q9NY27 417 aa8.02□□□□□ -1.13
SCFD1-217ENST00000555953 TREHO43280 583 aa8.01□□□□□ -1.13
SCFD1-217ENST00000555953 ENOX2Q16206 610 aaKnown RBP8.01□□□□□ -1.13
SCFD1-217ENST00000555953 CYP27C1Q4G0S4 372 aa8.01□□□□□ -1.13
SCFD1-217ENST00000555953 WFDC3Q8IUB2 231 aa8.01□□□□□ -1.13
SCFD1-217ENST00000555953 SMYD4Q8IYR2 804 aaPredicted RBP8.01□□□□□ -1.13
SCFD1-217ENST00000555953 BCL7CQ8WUZ0 217 aaPredicted RBP8.01□□□□□ -1.13
SCFD1-217ENST00000555953 AKAP2Q9Y2D5 859 aa8.01□□□□□ -1.13
SCFD1-217ENST00000555953 NEFMP07197 916 aa8□□□□□ -1.13
SCFD1-217ENST00000555953 HCLS1P14317 486 aaPredicted RBP8□□□□□ -1.13
SCFD1-217ENST00000555953 MAPK1P28482 360 aa8□□□□□ -1.13
SCFD1-217ENST00000555953 ZNF574Q6ZN55 896 aaPredicted RBP8□□□□□ -1.13
SCFD1-217ENST00000555953 FAM181AQ8N9Y4 354 aa8□□□□□ -1.13
SCFD1-217ENST00000555953 AGBL5Q8NDL9 886 aa8□□□□□ -1.13
SCFD1-217ENST00000555953 KRTAP9-9Q9BYP9 154 aa8□□□□□ -1.13
SCFD1-217ENST00000555953 KRTAP9-4Q9BYQ2 154 aa8□□□□□ -1.13
SCFD1-217ENST00000555953 U3KQE9 123 aa8□□□□□ -1.13
SCFD1-217ENST00000555953 RNGTTO60942 597 aaKnown RBP7.99□□□□□ -1.13
SCFD1-217ENST00000555953 BRD1O95696 1058 aa7.99□□□□□ -1.13
SCFD1-217ENST00000555953 ITGB5P18084 799 aa7.99□□□□□ -1.13
SCFD1-217ENST00000555953 ARNTP27540 789 aa7.99□□□□□ -1.13
SCFD1-217ENST00000555953 PLCB3Q01970 1234 aa7.99□□□□□ -1.13
SCFD1-217ENST00000555953 C3orf58Q8NDZ4 430 aa7.99□□□□□ -1.13
SCFD1-217ENST00000555953 SLC5A6Q9Y289 635 aa7.99□□□□□ -1.13
SCFD1-217ENST00000555953 LEFTY1O75610 366 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms