RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 PTGS1P23219 599 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 AK2P54819 239 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 UBASH3AP57075 661 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 FAM47CQ5HY64 1035 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 TEKT1Q969V4 418 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 GPAA1O43292 621 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 CFBP00751 764 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 STX17P56962 302 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 GADL1Q6ZQY3 521 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 MAEAQ7L5Y9 396 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 KIFC2Q96AC6 838 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 FNBP1Q96RU3 617 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 PLVAPQ9BX97 442 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.29□□□□□ -0.92
SYNE2-220ENST00000555612 VWA3AA6NCI4 1184 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 STAMBPO95630 424 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 GCKRQ14397 625 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 DCAF17Q5H9S7 520 aaPredicted RBP9.29□□□□□ -0.92
SYNE2-220ENST00000555612 RAD50Q92878 1312 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 LPXNO60711 386 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 SPAG1Q07617 926 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 KRT27Q7Z3Y8 459 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 CTAGE1Q96RT6 745 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 ATF5Q9Y2D1 282 aaPredicted RBP9.29□□□□□ -0.92
SYNE2-220ENST00000555612 CEP83Q9Y592 693 aa9.29□□□□□ -0.92
SYNE2-220ENST00000555612 RTL1A6NKG5 1358 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 M0QZ92 97 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 HOXB7P09629 217 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 RLBP1P12271 317 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 SMC1AQ14683 1233 aaKnown RBP9.28□□□□□ -0.92
SYNE2-220ENST00000555612 FAM196AQ6ZSG2 479 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 CCDC50Q8IVM0 306 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 NLGN1Q8N2Q7 840 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 PROCA1Q8NCQ7 364 aaPredicted RBP9.28□□□□□ -0.92
SYNE2-220ENST00000555612 MSANTD4Q8NCY6 345 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 CNKSR1Q969H4 720 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 DNM1Q05193 864 aaKnown RBP9.28□□□□□ -0.92
SYNE2-220ENST00000555612 NCAPH2Q6IBW4 605 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 PIK3AP1Q6ZUJ8 805 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 BABAM1Q9NWV8 329 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 V9GY48 417 aaPredicted RBP9.28□□□□□ -0.92
SYNE2-220ENST00000555612 PHKG2P15735 406 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 TERF1P54274 439 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 CERS3Q8IU89 383 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 APPBP2Q92624 585 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 IFT74Q96LB3 600 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 AS3MTQ9HBK9 375 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 CCNT1O60563 726 aaKnown RBP9.28□□□□□ -0.92
SYNE2-220ENST00000555612 SMTNP53814 917 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 PLCB3Q01970 1234 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 C16orf45Q96MC5 204 aaPredicted RBP9.28□□□□□ -0.92
SYNE2-220ENST00000555612 GOLGA6L10A0A0M3HER8 536 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 GIGYF2Q6Y7W6 1299 aaKnown RBP9.28□□□□□ -0.92
SYNE2-220ENST00000555612 TBC1D32Q96NH3 1257 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 TTC12Q9H892 705 aaPredicted RBP9.28□□□□□ -0.92
SYNE2-220ENST00000555612 SPC25Q9HBM1 224 aa9.28□□□□□ -0.92
SYNE2-220ENST00000555612 CEP170Q5SW79 1584 aa9.27□□□□□ -0.92
SYNE2-220ENST00000555612 F13A1P00488 732 aa9.27□□□□□ -0.92
SYNE2-220ENST00000555612 CPA1P15085 419 aa9.27□□□□□ -0.92
SYNE2-220ENST00000555612 ZAP70P43403 619 aa9.27□□□□□ -0.92
SYNE2-220ENST00000555612 STRN3Q13033 797 aa9.27□□□□□ -0.92
SYNE2-220ENST00000555612 RUFY3Q7L099 469 aa9.27□□□□□ -0.92
SYNE2-220ENST00000555612 ADCY5O95622 1261 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 MCM3P25205 808 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 CHMLP26374 656 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 CYLC1P35663 651 aaPredicted RBP9.27□□□□□ -0.93
SYNE2-220ENST00000555612 CEP135Q66GS9 1140 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 SV2BQ7L1I2 683 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 PPP1R14CQ8TAE6 165 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 TXKP42681 527 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 CTSWP56202 376 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 C8orf34Q49A92 452 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 ZSWIM4Q9H7M6 989 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 DACT1Q9NYF0 836 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 GCC2Q8IWJ2 1684 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 LOC102724428A0A0B4J2F2 783 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 BICDL2A1A5D9 508 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 KRT5P13647 590 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 SIK1P57059 783 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 MAATS1Q7Z4T9 603 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 CCDC65Q8IXS2 484 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 RNF34Q969K3 372 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 SLC5A4Q9NY91 659 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 ZNF532Q9HCE3 1301 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 CLASP1Q7Z460 1538 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 ARHGEF35A5YM69 484 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 ADCY7P51828 1080 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 KCNQ4P56696 695 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 RAPGEF1Q13905 1077 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 ANO6Q4KMQ2 910 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 GSTA5Q7RTV2 222 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 AOPEPQ8N6M6 819 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 INCENPQ9NQS7 918 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 KDM2BQ8NHM5 1336 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 MAST1Q9Y2H9 1570 aa9.27□□□□□ -0.93
SYNE2-220ENST00000555612 EIF4A1P60842 406 aaKnown RBP9.26□□□□□ -0.93
SYNE2-220ENST00000555612 FAM47AQ5JRC9 791 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 FRMD4BQ9Y2L6 1034 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 MBD5Q9P267 1494 aa9.26□□□□□ -0.93
SYNE2-220ENST00000555612 ESPNB1AK53 854 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms