RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PHLDB3Q6NSJ2 640 aa7.78□□□□□ -1.16
SCFD1-216ENST00000555550 PLD6Q8N2A8 252 aaKnown RBP7.78□□□□□ -1.16
SCFD1-216ENST00000555550 FAM181AQ8N9Y4 354 aa7.78□□□□□ -1.16
SCFD1-216ENST00000555550 WDR18Q9BV38 432 aa7.78□□□□□ -1.16
SCFD1-216ENST00000555550 B3GALT4O96024 378 aa7.77□□□□□ -1.17
SCFD1-216ENST00000555550 CD8BP10966 210 aa7.77□□□□□ -1.17
SCFD1-216ENST00000555550 LIG1P18858 919 aa7.77□□□□□ -1.17
SCFD1-216ENST00000555550 CD96P40200 585 aa7.77□□□□□ -1.17
SCFD1-216ENST00000555550 CDK5R2Q13319 367 aa7.77□□□□□ -1.17
SCFD1-216ENST00000555550 SF3B2Q13435 895 aaKnown RBP7.77□□□□□ -1.17
SCFD1-216ENST00000555550 CYP27C1Q4G0S4 372 aa7.77□□□□□ -1.17
SCFD1-216ENST00000555550 WDR89Q96FK6 387 aaPredicted RBP7.77□□□□□ -1.17
SCFD1-216ENST00000555550 KRTAP4-9Q9BYQ8 210 aa7.77□□□□□ -1.17
SCFD1-216ENST00000555550 ZC3H12CQ9C0D7 883 aaKnown RBP7.77□□□□□ -1.17
SCFD1-216ENST00000555550 BIN1O00499 593 aa7.76□□□□□ -1.17
SCFD1-216ENST00000555550 ZNF157P51786 506 aaPredicted RBP7.76□□□□□ -1.17
SCFD1-216ENST00000555550 STK11IPQ8N1F8 1099 aa7.76□□□□□ -1.17
SCFD1-216ENST00000555550 DDX54Q8TDD1 881 aaKnown RBP7.76□□□□□ -1.17
SCFD1-216ENST00000555550 ZNF576Q9H609 170 aa7.76□□□□□ -1.17
SCFD1-216ENST00000555550 FAM87AP0C7U9 286 aa7.75□□□□□ -1.17
SCFD1-216ENST00000555550 LCE4AQ5TA78 99 aa7.75□□□□□ -1.17
SCFD1-216ENST00000555550 NETO1Q8TDF5 533 aa7.75□□□□□ -1.17
SCFD1-216ENST00000555550 EHD4Q9H223 541 aa7.75□□□□□ -1.17
SCFD1-216ENST00000555550 ADAMTS6Q9UKP5 1117 aa7.75□□□□□ -1.17
SCFD1-216ENST00000555550 U3KQE9 123 aa7.75□□□□□ -1.17
SCFD1-216ENST00000555550 RNASE1P07998 156 aaKnown RBP7.74□□□□□ -1.17
SCFD1-216ENST00000555550 KIAA0319Q5VV43 1072 aa7.74□□□□□ -1.17
SCFD1-216ENST00000555550 GLIS3Q8NEA6 775 aa7.74□□□□□ -1.17
SCFD1-216ENST00000555550 RC3H2Q9HBD1 1191 aaKnown RBP7.74□□□□□ -1.17
SCFD1-216ENST00000555550 MBNL3Q9NUK0 354 aaKnown RBP7.74□□□□□ -1.17
SCFD1-216ENST00000555550 TMPRSS2O15393 492 aa7.73□□□□□ -1.17
SCFD1-216ENST00000555550 ATG4DQ86TL0 474 aaPredicted RBP7.73□□□□□ -1.17
SCFD1-216ENST00000555550 FAM168AQ92567 244 aa7.73□□□□□ -1.17
SCFD1-216ENST00000555550 CCDC86Q9H6F5 360 aaKnown RBP7.73□□□□□ -1.17
SCFD1-216ENST00000555550 CRIM1Q9NZV1 1036 aa7.73□□□□□ -1.17
SCFD1-216ENST00000555550 MTMR7Q9Y216 660 aa7.73□□□□□ -1.17
SCFD1-216ENST00000555550 FARP2O94887 1054 aaPredicted RBP7.72□□□□□ -1.17
SCFD1-216ENST00000555550 FUT4P22083 530 aa7.72□□□□□ -1.17
SCFD1-216ENST00000555550 ITPKAP23677 461 aa7.72□□□□□ -1.17
SCFD1-216ENST00000555550 PI4K2BQ8TCG2 481 aa7.72□□□□□ -1.17
SCFD1-216ENST00000555550 MISP3Q96FF7 219 aa7.72□□□□□ -1.17
SCFD1-216ENST00000555550 FANCD2OSQ96PS1 177 aa7.72□□□□□ -1.17
SCFD1-216ENST00000555550 PIDD1Q9HB75 910 aa7.72□□□□□ -1.17
SCFD1-216ENST00000555550 DBX1A6NMT0 343 aa7.71□□□□□ -1.18
SCFD1-216ENST00000555550 LEFTY1O75610 366 aa7.71□□□□□ -1.18
SCFD1-216ENST00000555550 ORC1Q13415 861 aa7.71□□□□□ -1.18
SCFD1-216ENST00000555550 CCDC82Q8N4S0 544 aa7.71□□□□□ -1.18
SCFD1-216ENST00000555550 LRRN4CLQ8ND94 238 aa7.71□□□□□ -1.18
SCFD1-216ENST00000555550 NPHS2Q9NP85 383 aa7.71□□□□□ -1.18
SCFD1-216ENST00000555550 DISC1Q9NRI5 854 aa7.71□□□□□ -1.18
SCFD1-216ENST00000555550 ZNF862O60290 1169 aa7.7□□□□□ -1.18
SCFD1-216ENST00000555550 RNGTTO60942 597 aaKnown RBP7.7□□□□□ -1.18
SCFD1-216ENST00000555550 SLFN14P0C7P3 912 aa7.7□□□□□ -1.18
SCFD1-216ENST00000555550 AP3B2Q13367 1082 aa7.7□□□□□ -1.18
SCFD1-216ENST00000555550 AOC3Q16853 763 aa7.7□□□□□ -1.18
SCFD1-216ENST00000555550 SMYD4Q8IYR2 804 aaPredicted RBP7.7□□□□□ -1.18
SCFD1-216ENST00000555550 VAV3Q9UKW4 847 aa7.7□□□□□ -1.18
SCFD1-216ENST00000555550 BRPF3Q9ULD4 1205 aa7.7□□□□□ -1.18
SCFD1-216ENST00000555550 SYNGAP1Q96PV0 1343 aa7.7□□□□□ -1.18
SCFD1-216ENST00000555550 HCLS1P14317 486 aaPredicted RBP7.69□□□□□ -1.18
SCFD1-216ENST00000555550 PRKCQQ04759 706 aa7.69□□□□□ -1.18
SCFD1-216ENST00000555550 FAAP100Q0VG06 881 aa7.69□□□□□ -1.18
SCFD1-216ENST00000555550 TTLL4Q14679 1199 aa7.69□□□□□ -1.18
SCFD1-216ENST00000555550 ID3Q02535 119 aa7.68□□□□□ -1.18
SCFD1-216ENST00000555550 ECM1Q16610 540 aa7.68□□□□□ -1.18
SCFD1-216ENST00000555550 FBLN7Q53RD9 439 aa7.68□□□□□ -1.18
SCFD1-216ENST00000555550 KSR1Q8IVT5 923 aa7.68□□□□□ -1.18
SCFD1-216ENST00000555550 TMEM40Q8WWA1 233 aa7.68□□□□□ -1.18
SCFD1-216ENST00000555550 ATXN3LQ9H3M9 355 aa7.68□□□□□ -1.18
SCFD1-216ENST00000555550 ABCB6Q9NP58 842 aa7.68□□□□□ -1.18
SCFD1-216ENST00000555550 PLAGL2Q9UPG8 496 aa7.68□□□□□ -1.18
SCFD1-216ENST00000555550 ICMTO60725 284 aa7.67□□□□□ -1.18
SCFD1-216ENST00000555550 CPNE3O75131 537 aaKnown RBP7.67□□□□□ -1.18
SCFD1-216ENST00000555550 NEFLP07196 543 aa7.67□□□□□ -1.18
SCFD1-216ENST00000555550 OXCT1P55809 520 aa7.67□□□□□ -1.18
SCFD1-216ENST00000555550 PKN1Q16512 942 aa7.67□□□□□ -1.18
SCFD1-216ENST00000555550 SPOCD1Q6ZMY3 1216 aa7.67□□□□□ -1.18
SCFD1-216ENST00000555550 ARHGAP27Q6ZUM4 889 aa7.67□□□□□ -1.18
SCFD1-216ENST00000555550 ERICH6Q7L0X2 663 aa7.67□□□□□ -1.18
SCFD1-216ENST00000555550 PRDM7Q9NQW5 492 aa7.67□□□□□ -1.18
SCFD1-216ENST00000555550 TMEM238LA0A1B0GVL6 79 aa7.66□□□□□ -1.18
SCFD1-216ENST00000555550 GADD45BO75293 160 aaPredicted RBP7.66□□□□□ -1.18
SCFD1-216ENST00000555550 PTPN12Q05209 780 aaKnown RBP7.66□□□□□ -1.18
SCFD1-216ENST00000555550 IFI16Q16666 785 aaKnown RBP7.66□□□□□ -1.18
SCFD1-216ENST00000555550 DUSP23Q9BVJ7 150 aa7.66□□□□□ -1.18
SCFD1-216ENST00000555550 PCDHGC5Q9Y5F6 944 aa7.66□□□□□ -1.18
SCFD1-216ENST00000555550 KIF4BQ2VIQ3 1234 aa7.65□□□□□ -1.18
SCFD1-216ENST00000555550 CCDC74AQ96AQ1 378 aa7.65□□□□□ -1.18
SCFD1-216ENST00000555550 HRASLS5Q96KN8 279 aa7.65□□□□□ -1.18
SCFD1-216ENST00000555550 SSU72Q9NP77 194 aaKnown RBP7.65□□□□□ -1.18
SCFD1-216ENST00000555550 PCOLCE2Q9UKZ9 415 aa7.65□□□□□ -1.18
SCFD1-216ENST00000555550 H3BRB1 525 aa7.64□□□□□ -1.19
SCFD1-216ENST00000555550 GSTP1P09211 210 aaKnown RBP7.64□□□□□ -1.19
SCFD1-216ENST00000555550 ITIH2P19823 946 aa7.64□□□□□ -1.19
SCFD1-216ENST00000555550 KCNB2Q92953 911 aa7.64□□□□□ -1.19
SCFD1-216ENST00000555550 TUT1Q9H6E5 874 aaKnown RBP7.64□□□□□ -1.19
SCFD1-216ENST00000555550 TMEM265A0A087WTH1 108 aa7.63□□□□□ -1.19
SCFD1-216ENST00000555550 EIF1AYO14602 144 aaKnown RBP7.63□□□□□ -1.19
SCFD1-216ENST00000555550 PPP1R15AO75807 674 aaPredicted RBP7.63□□□□□ -1.19
SCFD1-216ENST00000555550 CEACAM5P06731 702 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms