RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 SHISA4Q96DD7 197 aa14.23□□□□□ -0.13
VPS33B-204ENST00000554660 SPINK5Q9NQ38 1064 aaPredicted RBP14.23□□□□□ -0.13
VPS33B-204ENST00000554660 RIPOR2Q9Y4F9 1068 aa14.23□□□□□ -0.13
VPS33B-204ENST00000554660 MROH5Q6ZUA9 1318 aa14.22□□□□□ -0.13
VPS33B-204ENST00000554660 FRAT2O75474 233 aaPredicted RBP14.22□□□□□ -0.13
VPS33B-204ENST00000554660 WDHD1O75717 1129 aaPredicted RBP14.22□□□□□ -0.13
VPS33B-204ENST00000554660 NBPF7P0C2Y1 421 aaPredicted RBP14.22□□□□□ -0.13
VPS33B-204ENST00000554660 PDE4AP27815 886 aa14.22□□□□□ -0.13
VPS33B-204ENST00000554660 CTGFP29279 349 aa14.22□□□□□ -0.13
VPS33B-204ENST00000554660 MTFR1Q15390 333 aa14.22□□□□□ -0.13
VPS33B-204ENST00000554660 LRRC24Q50LG9 513 aa14.22□□□□□ -0.13
VPS33B-204ENST00000554660 FBXO33Q7Z6M2 555 aa14.22□□□□□ -0.13
VPS33B-204ENST00000554660 CRBNQ96SW2 442 aa14.22□□□□□ -0.13
VPS33B-204ENST00000554660 SRCIN1Q9C0H9 1055 aa14.22□□□□□ -0.13
VPS33B-204ENST00000554660 TMOD2Q9NZR1 351 aa14.22□□□□□ -0.13
VPS33B-204ENST00000554660 ZBTB47Q9UFB7 747 aaPredicted RBP14.22□□□□□ -0.13
VPS33B-204ENST00000554660 CPA4Q9UI42 421 aa14.22□□□□□ -0.13
VPS33B-204ENST00000554660 RPAP1Q9BWH6 1393 aaPredicted RBP14.22□□□□□ -0.13
VPS33B-204ENST00000554660 ALDH1L1O75891 902 aa14.21□□□□□ -0.13
VPS33B-204ENST00000554660 PPIL2Q13356 520 aa14.21□□□□□ -0.13
VPS33B-204ENST00000554660 METTL24Q5JXM2 366 aa14.21□□□□□ -0.13
VPS33B-204ENST00000554660 CHRDL2Q6WN34 429 aa14.21□□□□□ -0.13
VPS33B-204ENST00000554660 TBC1D22AQ8WUA7 517 aa14.21□□□□□ -0.13
VPS33B-204ENST00000554660 DDRGK1Q96HY6 314 aa14.21□□□□□ -0.13
VPS33B-204ENST00000554660 ZDHHC15Q96MV8 337 aa14.21□□□□□ -0.13
VPS33B-204ENST00000554660 BICC1Q9H694 974 aaKnown RBP14.21□□□□□ -0.13
VPS33B-204ENST00000554660 ZCCHC17Q9NP64 241 aaKnown RBP14.21□□□□□ -0.13
VPS33B-204ENST00000554660 RANBP2P49792 3224 aaKnown RBP14.2□□□□□ -0.14
VPS33B-204ENST00000554660 INPP5BP32019 993 aa14.2□□□□□ -0.14
VPS33B-204ENST00000554660 BCAMP50895 628 aa14.2□□□□□ -0.14
VPS33B-204ENST00000554660 HDLBPQ00341 1268 aaKnown RBP14.2□□□□□ -0.14
VPS33B-204ENST00000554660 CAVIN4Q5BKX8 364 aa14.2□□□□□ -0.14
VPS33B-204ENST00000554660 APOBEC3HQ6NTF7 200 aaKnown RBP14.2□□□□□ -0.14
VPS33B-204ENST00000554660 MIGA2Q7L4E1 593 aa14.2□□□□□ -0.14
VPS33B-204ENST00000554660 FAM83AQ86UY5 434 aa14.2□□□□□ -0.14
VPS33B-204ENST00000554660 WDR63Q8IWG1 891 aa14.2□□□□□ -0.14
VPS33B-204ENST00000554660 VGLL2Q8N8G2 317 aa14.2□□□□□ -0.14
VPS33B-204ENST00000554660 KLHDC4Q8TBB5 520 aa14.2□□□□□ -0.14
VPS33B-204ENST00000554660 TRIM47Q96LD4 638 aa14.2□□□□□ -0.14
VPS33B-204ENST00000554660 PSMC4P43686 418 aa14.19□□□□□ -0.14
VPS33B-204ENST00000554660 PDE3AQ14432 1141 aa14.19□□□□□ -0.14
VPS33B-204ENST00000554660 DCAF15Q66K64 600 aa14.19□□□□□ -0.14
VPS33B-204ENST00000554660 C17orf99Q6UX52 265 aa14.19□□□□□ -0.14
VPS33B-204ENST00000554660 ANKRD44Q8N8A2 993 aa14.19□□□□□ -0.14
VPS33B-204ENST00000554660 MAST3O60307 1309 aa14.18□□□□□ -0.14
VPS33B-204ENST00000554660 ADGRA2Q96PE1 1338 aa14.18□□□□□ -0.14
VPS33B-204ENST00000554660 TRIOBPQ9H2D6 2365 aa14.18□□□□□ -0.14
VPS33B-204ENST00000554660 PDHXO00330 501 aa14.18□□□□□ -0.14
VPS33B-204ENST00000554660 PDE8BO95263 885 aa14.18□□□□□ -0.14
VPS33B-204ENST00000554660 GNRH1P01148 92 aa14.18□□□□□ -0.14
VPS33B-204ENST00000554660 OSBPP22059 807 aa14.18□□□□□ -0.14
VPS33B-204ENST00000554660 PRMT2P55345 433 aa14.18□□□□□ -0.14
VPS33B-204ENST00000554660 PPATQ06203 517 aa14.18□□□□□ -0.14
VPS33B-204ENST00000554660 RABL6Q3YEC7 729 aaPredicted RBP14.18□□□□□ -0.14
VPS33B-204ENST00000554660 HOOK2Q96ED9 719 aa14.18□□□□□ -0.14
VPS33B-204ENST00000554660 ZNF341Q9BYN7 854 aa14.18□□□□□ -0.14
VPS33B-204ENST00000554660 SRRDQ9UH36 339 aa14.18□□□□□ -0.14
VPS33B-204ENST00000554660 UTYO14607 1347 aa14.17□□□□□ -0.14
VPS33B-204ENST00000554660 MYPNQ86TC9 1320 aa14.17□□□□□ -0.14
VPS33B-204ENST00000554660 MYH13Q9UKX3 1938 aa14.17□□□□□ -0.14
VPS33B-204ENST00000554660 CEP290O15078 2479 aa14.17□□□□□ -0.14
VPS33B-204ENST00000554660 FMNL1O95466 1100 aaPredicted RBP14.17□□□□□ -0.14
VPS33B-204ENST00000554660 FKBP1CQ5VVH2 108 aa14.17□□□□□ -0.14
VPS33B-204ENST00000554660 ANKRD23Q86SG2 305 aa14.17□□□□□ -0.14
VPS33B-204ENST00000554660 RAET1EQ8TD07 263 aa14.17□□□□□ -0.14
VPS33B-204ENST00000554660 DPF3Q92784 378 aa14.17□□□□□ -0.14
VPS33B-204ENST00000554660 RBM27Q9P2N5 1060 aaKnown RBP14.17□□□□□ -0.14
VPS33B-204ENST00000554660 GRK4P32298 578 aa14.16□□□□□ -0.14
VPS33B-204ENST00000554660 TCP10Q12799 353 aa14.16□□□□□ -0.14
VPS33B-204ENST00000554660 NFIAQ12857 509 aa14.16□□□□□ -0.14
VPS33B-204ENST00000554660 DIXDC1Q155Q3 683 aa14.16□□□□□ -0.14
VPS33B-204ENST00000554660 CYP2C8P10632 490 aa14.15□□□□□ -0.14
VPS33B-204ENST00000554660 CCL5P13501 91 aa14.15□□□□□ -0.14
VPS33B-204ENST00000554660 PRKCZQ05513 592 aa14.15□□□□□ -0.14
VPS33B-204ENST00000554660 MOGSQ13724 837 aa14.15□□□□□ -0.14
VPS33B-204ENST00000554660 PUM3Q15397 648 aaKnown RBP14.15□□□□□ -0.14
VPS33B-204ENST00000554660 HHIPL2Q6UWX4 724 aa14.15□□□□□ -0.14
VPS33B-204ENST00000554660 FAM151AQ8WW52 585 aa14.15□□□□□ -0.14
VPS33B-204ENST00000554660 KCNH4Q9UQ05 1017 aa14.15□□□□□ -0.14
VPS33B-204ENST00000554660 SUGT1Q9Y2Z0 365 aa14.15□□□□□ -0.14
VPS33B-204ENST00000554660 DAGLAQ9Y4D2 1042 aa14.15□□□□□ -0.14
VPS33B-204ENST00000554660 KIF16BQ96L93 1317 aa14.15□□□□□ -0.15
VPS33B-204ENST00000554660 DOCK2Q92608 1830 aa14.14□□□□□ -0.15
VPS33B-204ENST00000554660 IFIT1P09914 478 aaKnown RBP14.14□□□□□ -0.15
VPS33B-204ENST00000554660 FGFR2P21802 821 aa14.14□□□□□ -0.15
VPS33B-204ENST00000554660 GJA8P48165 433 aa14.14□□□□□ -0.15
VPS33B-204ENST00000554660 CDC42EP5Q6NZY7 148 aa14.14□□□□□ -0.15
VPS33B-204ENST00000554660 UBE2Q1Q7Z7E8 422 aa14.14□□□□□ -0.15
VPS33B-204ENST00000554660 NKX2-3Q8TAU0 364 aa14.14□□□□□ -0.15
VPS33B-204ENST00000554660 MRIQ9BWK5 157 aa14.14□□□□□ -0.15
VPS33B-204ENST00000554660 RNF208Q9H0X6 261 aa14.14□□□□□ -0.15
VPS33B-204ENST00000554660 BIN2Q9UBW5 565 aaPredicted RBP14.14□□□□□ -0.15
VPS33B-204ENST00000554660 ZNF112Q9UJU3 913 aa14.14□□□□□ -0.15
VPS33B-204ENST00000554660 GJB1P08034 283 aa14.13□□□□□ -0.15
VPS33B-204ENST00000554660 CT47B1P0C2W7 299 aaPredicted RBP14.13□□□□□ -0.15
VPS33B-204ENST00000554660 HOXD10P28358 340 aa14.13□□□□□ -0.15
VPS33B-204ENST00000554660 PRDX5P30044 214 aa14.13□□□□□ -0.15
VPS33B-204ENST00000554660 NOL9Q5SY16 702 aaKnown RBP14.13□□□□□ -0.15
VPS33B-204ENST00000554660 PARK7Q99497 189 aaKnown RBP14.13□□□□□ -0.15
VPS33B-204ENST00000554660 GABRQQ9UN88 632 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms