RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 POLA2Q14181 598 aa15.24■□□□□ 0.03
SHMT2-214ENST00000554604 DIXDC1Q155Q3 683 aa15.24■□□□□ 0.03
SHMT2-214ENST00000554604 SSH3Q8TE77 659 aa15.24■□□□□ 0.03
SHMT2-214ENST00000554604 CLMNQ96JQ2 1002 aa15.24■□□□□ 0.03
SHMT2-214ENST00000554604 ABCF2Q9UG63 623 aa15.24■□□□□ 0.03
SHMT2-214ENST00000554604 USP2O75604 605 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-214ENST00000554604 IGHDP01880 384 aa15.23■□□□□ 0.03
SHMT2-214ENST00000554604 FKBP1CQ5VVH2 108 aa15.23■□□□□ 0.03
SHMT2-214ENST00000554604 SPRYD7Q5W111 196 aa15.23■□□□□ 0.03
SHMT2-214ENST00000554604 SPTY2D1Q68D10 685 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-214ENST00000554604 FAM83AQ86UY5 434 aa15.23■□□□□ 0.03
SHMT2-214ENST00000554604 DZIP1Q86YF9 867 aaKnown RBP15.23■□□□□ 0.03
SHMT2-214ENST00000554604 ANKRD13AQ8IZ07 590 aa15.23■□□□□ 0.03
SHMT2-214ENST00000554604 HOOK2Q96ED9 719 aa15.23■□□□□ 0.03
SHMT2-214ENST00000554604 TEPSINQ96N21 525 aa15.23■□□□□ 0.03
SHMT2-214ENST00000554604 DAGLAQ9Y4D2 1042 aa15.23■□□□□ 0.03
SHMT2-214ENST00000554604 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-214ENST00000554604 PDS5AQ29RF7 1337 aaKnown RBP15.22■□□□□ 0.03
SHMT2-214ENST00000554604 ZBTB22O15209 634 aa15.22■□□□□ 0.03
SHMT2-214ENST00000554604 CDAN1Q8IWY9 1227 aa15.22■□□□□ 0.03
SHMT2-214ENST00000554604 SLF2Q8IX21 1173 aa15.22■□□□□ 0.03
SHMT2-214ENST00000554604 CHMP4BQ9H444 224 aaKnown RBP15.22■□□□□ 0.03
SHMT2-214ENST00000554604 RWDD1Q9H446 243 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-214ENST00000554604 ZBTB48P10074 688 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-214ENST00000554604 PDE4AP27815 886 aa15.21■□□□□ 0.03
SHMT2-214ENST00000554604 TM4SF4P48230 202 aa15.21■□□□□ 0.03
SHMT2-214ENST00000554604 WNK4Q96J92 1243 aa15.21■□□□□ 0.03
SHMT2-214ENST00000554604 BACH2Q9BYV9 841 aa15.21■□□□□ 0.03
SHMT2-214ENST00000554604 PCDHB15Q9Y5E8 787 aa15.21■□□□□ 0.03
SHMT2-214ENST00000554604 MANSC4A6NHS7 340 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-214ENST00000554604 UQCRFS1P1P0C7P4 283 aa15.2■□□□□ 0.02
SHMT2-214ENST00000554604 INHBEP58166 350 aa15.2■□□□□ 0.02
SHMT2-214ENST00000554604 TCP10Q12799 353 aa15.2■□□□□ 0.02
SHMT2-214ENST00000554604 TNNI3KQ59H18 835 aa15.2■□□□□ 0.02
SHMT2-214ENST00000554604 CDC42EP5Q6NZY7 148 aa15.2■□□□□ 0.02
SHMT2-214ENST00000554604 ERICH6Q7L0X2 663 aa15.2■□□□□ 0.02
SHMT2-214ENST00000554604 SPATA5Q8NB90 893 aa15.2■□□□□ 0.02
SHMT2-214ENST00000554604 ELP3Q9H9T3 547 aa15.2■□□□□ 0.02
SHMT2-214ENST00000554604 GPR108Q9NPR9 543 aa15.2■□□□□ 0.02
SHMT2-214ENST00000554604 USP40Q9NVE5 1235 aa15.2■□□□□ 0.02
SHMT2-214ENST00000554604 HMG20BQ9P0W2 317 aa15.2■□□□□ 0.02
SHMT2-214ENST00000554604 CSADQ9Y600 493 aa15.2■□□□□ 0.02
SHMT2-214ENST00000554604 FPGT-TNNI3KV9GXZ4 949 aa15.2■□□□□ 0.02
SHMT2-214ENST00000554604 LAMB1P07942 1786 aa15.2■□□□□ 0.02
SHMT2-214ENST00000554604 ARID4AP29374 1257 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-214ENST00000554604 MAP3K9P80192 1104 aa15.19■□□□□ 0.02
SHMT2-214ENST00000554604 CCDC158Q5M9N0 1113 aa15.19■□□□□ 0.02
SHMT2-214ENST00000554604 TTC39AQ5SRH9 613 aa15.19■□□□□ 0.02
SHMT2-214ENST00000554604 DCAF15Q66K64 600 aa15.19■□□□□ 0.02
SHMT2-214ENST00000554604 CEP85Q6P2H3 762 aa15.19■□□□□ 0.02
SHMT2-214ENST00000554604 FAM151AQ8WW52 585 aa15.19■□□□□ 0.02
SHMT2-214ENST00000554604 NOP58Q9Y2X3 529 aaKnown RBP15.19■□□□□ 0.02
SHMT2-214ENST00000554604 MYO5AQ9Y4I1 1855 aaKnown RBP15.18■□□□□ 0.02
SHMT2-214ENST00000554604 TBC1D8O95759 1140 aa15.18■□□□□ 0.02
SHMT2-214ENST00000554604 HDAC1Q13547 482 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-214ENST00000554604 DGKZQ13574 1117 aa15.18■□□□□ 0.02
SHMT2-214ENST00000554604 PI16Q6UXB8 463 aa15.18■□□□□ 0.02
SHMT2-214ENST00000554604 OPTNQ96CV9 577 aa15.18■□□□□ 0.02
SHMT2-214ENST00000554604 ABHD8Q96I13 439 aa15.18■□□□□ 0.02
SHMT2-214ENST00000554604 ZBTB40Q9NUA8 1239 aa15.18■□□□□ 0.02
SHMT2-214ENST00000554604 RPAP1Q9BWH6 1393 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-214ENST00000554604 DOCK2Q92608 1830 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 ALDH1A1P00352 501 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 MCAMP43121 646 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 GSTO1P78417 241 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 MECOMQ03112 1051 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 NFIAQ12857 509 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 VGLL4Q14135 290 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-214ENST00000554604 TBC1D9Q6ZT07 1266 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 ERC1Q8IUD2 1116 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.17■□□□□ 0.028e-7■■□□□ 11.7
SHMT2-214ENST00000554604 WRNIP1Q96S55 665 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 DBNDD2Q9BQY9 259 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 RAI14Q9P0K7 980 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 LRP2BPQ9P2M1 347 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 MROH7-TTC4A0A0A0MT08 1334 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 GAKO14976 1311 aa15.17■□□□□ 0.02
SHMT2-214ENST00000554604 LDHCP07864 332 aa15.16■□□□□ 0.02
SHMT2-214ENST00000554604 HSP90AB4PQ58FF6 505 aa15.16■□□□□ 0.02
SHMT2-214ENST00000554604 OTUD7BQ6GQQ9 843 aa15.16■□□□□ 0.02
SHMT2-214ENST00000554604 MIGA2Q7L4E1 593 aa15.16■□□□□ 0.02
SHMT2-214ENST00000554604 SKAP1Q86WV1 359 aa15.16■□□□□ 0.02
SHMT2-214ENST00000554604 IFNL1Q8IU54 200 aa15.16■□□□□ 0.02
SHMT2-214ENST00000554604 FAM163AQ96GL9 167 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-214ENST00000554604 ZNF341Q9BYN7 854 aa15.16■□□□□ 0.02
SHMT2-214ENST00000554604 MCOLN1Q9GZU1 580 aa15.16■□□□□ 0.02
SHMT2-214ENST00000554604 SNRKQ9NRH2 765 aa15.16■□□□□ 0.02
SHMT2-214ENST00000554604 EXOC6BQ9Y2D4 811 aa15.16■□□□□ 0.02
SHMT2-214ENST00000554604 HMMRO75330 724 aa15.15■□□□□ 0.02
SHMT2-214ENST00000554604 GJA5P36382 358 aa15.15■□□□□ 0.02
SHMT2-214ENST00000554604 BTDP43251 543 aa15.15■□□□□ 0.02
SHMT2-214ENST00000554604 RGS3P49796 1198 aa15.15■□□□□ 0.02
SHMT2-214ENST00000554604 ZSCAN29Q8IWY8 852 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-214ENST00000554604 OTUD5Q96G74 571 aa15.15■□□□□ 0.02
SHMT2-214ENST00000554604 FAM198AQ9UFP1 575 aa15.15■□□□□ 0.02
SHMT2-214ENST00000554604 ENTPD3O75355 529 aa15.14■□□□□ 0.01
SHMT2-214ENST00000554604 RPAP2Q8IXW5 612 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-214ENST00000554604 CNKSR2Q8WXI2 1034 aa15.14■□□□□ 0.01
SHMT2-214ENST00000554604 ZKSCAN4Q969J2 545 aaPredicted RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms