RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 PODNQ7Z5L7 613 aa17.64■□□□□ 0.41
SHMT2-208ENST00000553868 OSBPL3Q9H4L5 887 aa17.64■□□□□ 0.41
SHMT2-208ENST00000553868 GPR108Q9NPR9 543 aa17.64■□□□□ 0.41
SHMT2-208ENST00000553868 NR2E3Q9Y5X4 410 aa17.64■□□□□ 0.41
SHMT2-208ENST00000553868 A0A1W2PPC1 479 aa17.63■□□□□ 0.41
SHMT2-208ENST00000553868 TESPA1A2RU30 521 aaPredicted RBP17.63■□□□□ 0.41
SHMT2-208ENST00000553868 IGHMBP2P38935 993 aaKnown RBP17.63■□□□□ 0.41
SHMT2-208ENST00000553868 BMP2KLQ5H9B9 411 aa17.63■□□□□ 0.41
SHMT2-208ENST00000553868 LDHAL6AQ6ZMR3 332 aa17.63■□□□□ 0.41
SHMT2-208ENST00000553868 HTATIP2Q9BUP3 242 aa17.63■□□□□ 0.41
SHMT2-208ENST00000553868 CNNM1Q9NRU3 951 aa17.63■□□□□ 0.41
SHMT2-208ENST00000553868 CEP126Q9P2H0 1117 aa17.63■□□□□ 0.41
SHMT2-208ENST00000553868 STXBP5LQ9Y2K9 1186 aa17.63■□□□□ 0.41
SHMT2-208ENST00000553868 PDE1AP54750 535 aa17.62■□□□□ 0.41
SHMT2-208ENST00000553868 TAF1CQ15572 869 aaPredicted RBP17.62■□□□□ 0.41
SHMT2-208ENST00000553868 ATG9AQ7Z3C6 839 aa17.62■□□□□ 0.41
SHMT2-208ENST00000553868 AACSQ86V21 672 aa17.62■□□□□ 0.41
SHMT2-208ENST00000553868 KIAA0825Q8IV33 1275 aa17.62■□□□□ 0.41
SHMT2-208ENST00000553868 ZNF594Q96JF6 807 aaPredicted RBP17.62■□□□□ 0.41
SHMT2-208ENST00000553868 MPHOSPH8Q99549 860 aa17.62■□□□□ 0.41
SHMT2-208ENST00000553868 AKAP2Q9Y2D5 859 aa17.62■□□□□ 0.41
SHMT2-208ENST00000553868 PPP1R12BO60237 982 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-208ENST00000553868 TFCP2Q12800 502 aa17.61■□□□□ 0.41
SHMT2-208ENST00000553868 ARHGEF6Q15052 776 aa17.61■□□□□ 0.41
SHMT2-208ENST00000553868 CNKSR2Q8WXI2 1034 aa17.61■□□□□ 0.41
SHMT2-208ENST00000553868 BRI3BPQ8WY22 251 aa17.61■□□□□ 0.41
SHMT2-208ENST00000553868 ZBED3Q96IU2 234 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-208ENST00000553868 MS4A4AQ96JQ5 239 aa17.61■□□□□ 0.41
SHMT2-208ENST00000553868 PCDHAC2Q9Y5I4 1007 aa17.61■□□□□ 0.41
SHMT2-208ENST00000553868 TTC41PQ6P2S7 1318 aa17.61■□□□□ 0.41
SHMT2-208ENST00000553868 SALL3Q9BXA9 1300 aa17.61■□□□□ 0.41
SHMT2-208ENST00000553868 ERC2O15083 957 aa17.6■□□□□ 0.41
SHMT2-208ENST00000553868 USP2O75604 605 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-208ENST00000553868 LRRC24Q50LG9 513 aa17.6■□□□□ 0.41
SHMT2-208ENST00000553868 TNNI3KQ59H18 835 aa17.6■□□□□ 0.41
SHMT2-208ENST00000553868 METTL24Q5JXM2 366 aa17.6■□□□□ 0.41
SHMT2-208ENST00000553868 TTC22Q5TAA0 569 aa17.6■□□□□ 0.41
SHMT2-208ENST00000553868 NBPF12Q5TAG4 269 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-208ENST00000553868 ANKRD18AQ8IVF6 992 aa17.6■□□□□ 0.41
SHMT2-208ENST00000553868 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.6■□□□□ 0.41
SHMT2-208ENST00000553868 FAM43AQ8N2R8 423 aa17.6■□□□□ 0.41
SHMT2-208ENST00000553868 OTUD7AQ8TE49 926 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-208ENST00000553868 OPTNQ96CV9 577 aa17.6■□□□□ 0.41
SHMT2-208ENST00000553868 ELP3Q9H9T3 547 aa17.6■□□□□ 0.41
SHMT2-208ENST00000553868 ZFYVE28Q9HCC9 887 aa17.6■□□□□ 0.41
SHMT2-208ENST00000553868 FPGT-TNNI3KV9GXZ4 949 aa17.6■□□□□ 0.41
SHMT2-208ENST00000553868 XDHP47989 1333 aa17.6■□□□□ 0.41
SHMT2-208ENST00000553868 MROH5Q6ZUA9 1318 aa17.6■□□□□ 0.41
SHMT2-208ENST00000553868 OTOFQ9HC10 1997 aa17.59■□□□□ 0.41
SHMT2-208ENST00000553868 PUS3Q9BZE2 481 aaKnown RBP17.59■□□□□ 0.41
SHMT2-208ENST00000553868 ECHDC1Q9NTX5 307 aa17.59■□□□□ 0.41
SHMT2-208ENST00000553868 MTMR10Q9NXD2 777 aa17.59■□□□□ 0.41
SHMT2-208ENST00000553868 RIPOR2Q9Y4F9 1068 aa17.59■□□□□ 0.41
SHMT2-208ENST00000553868 EIF5BO60841 1220 aaKnown RBP17.58■□□□□ 0.4
SHMT2-208ENST00000553868 GJA8P48165 433 aa17.58■□□□□ 0.4
SHMT2-208ENST00000553868 EAF2Q96CJ1 260 aaPredicted RBP17.58■□□□□ 0.4
SHMT2-208ENST00000553868 EYSQ5T1H1 3165 aa17.58■□□□□ 0.4
SHMT2-208ENST00000553868 COL1A1P02452 1464 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-208ENST00000553868 MYO3BQ8WXR4 1341 aa17.57■□□□□ 0.4
SHMT2-208ENST00000553868 CCL15-CCL14A0A0B4J2E2 113 aa17.57■□□□□ 0.4
SHMT2-208ENST00000553868 CLRN2A0PK11 232 aa17.57■□□□□ 0.4
SHMT2-208ENST00000553868 GLRX3O76003 335 aaKnown RBP17.57■□□□□ 0.4
SHMT2-208ENST00000553868 ATP2B4P23634 1241 aa17.57■□□□□ 0.4
SHMT2-208ENST00000553868 LACTBP83111 547 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-208ENST00000553868 CCL15Q16663 113 aa17.57■□□□□ 0.4
SHMT2-208ENST00000553868 STRIP1Q5VSL9 837 aa17.57■□□□□ 0.4
SHMT2-208ENST00000553868 TXNRD3Q86VQ6 643 aa17.57■□□□□ 0.4
SHMT2-208ENST00000553868 EVI5O60447 810 aa17.56■□□□□ 0.4
SHMT2-208ENST00000553868 FARP2O94887 1054 aaPredicted RBP17.56■□□□□ 0.4
SHMT2-208ENST00000553868 CCL5P13501 91 aa17.56■□□□□ 0.4
SHMT2-208ENST00000553868 CTGFP29279 349 aa17.56■□□□□ 0.4
SHMT2-208ENST00000553868 IREB2P48200 963 aaKnown RBP17.56■□□□□ 0.4
SHMT2-208ENST00000553868 ANKRD13AQ8IZ07 590 aa17.56■□□□□ 0.4
SHMT2-208ENST00000553868 CCDC8Q9H0W5 538 aaPredicted RBP17.56■□□□□ 0.4
SHMT2-208ENST00000553868 BSDC1Q9NW68 430 aaPredicted RBP17.56■□□□□ 0.4
SHMT2-208ENST00000553868 GJB1P08034 283 aa17.55■□□□□ 0.4
SHMT2-208ENST00000553868 NKX2-3Q8TAU0 364 aa17.55■□□□□ 0.4
SHMT2-208ENST00000553868 BACH2Q9BYV9 841 aa17.55■□□□□ 0.4
SHMT2-208ENST00000553868 RNF208Q9H0X6 261 aa17.55■□□□□ 0.4
SHMT2-208ENST00000553868 PRDM6Q9NQX0 595 aa17.55■□□□□ 0.4
SHMT2-208ENST00000553868 MED23Q9ULK4 1368 aa17.54■□□□□ 0.4
SHMT2-208ENST00000553868 A0A1B0GUL7 405 aa17.54■□□□□ 0.4
SHMT2-208ENST00000553868 PDE8BO95263 885 aa17.54■□□□□ 0.4
SHMT2-208ENST00000553868 GSPT1P15170 499 aaKnown RBP17.54■□□□□ 0.4
SHMT2-208ENST00000553868 PUM3Q15397 648 aaKnown RBP17.54■□□□□ 0.4
SHMT2-208ENST00000553868 ATP2B3Q16720 1220 aa17.54■□□□□ 0.4
SHMT2-208ENST00000553868 SUPT20HL1Q3ZLR7 823 aa17.54■□□□□ 0.4
SHMT2-208ENST00000553868 TTLL5Q6EMB2 1281 aa17.54■□□□□ 0.4
SHMT2-208ENST00000553868 CASC1Q6TDU7 716 aa17.54■□□□□ 0.4
SHMT2-208ENST00000553868 NEUROD6Q96NK8 337 aa17.54■□□□□ 0.4
SHMT2-208ENST00000553868 ALPK3Q96L96 1907 aa17.53■□□□□ 0.4
SHMT2-208ENST00000553868 UNCXA6NJT0 531 aa17.53■□□□□ 0.4
SHMT2-208ENST00000553868 CDC45O75419 566 aa17.53■□□□□ 0.4
SHMT2-208ENST00000553868 KLRK1P26718 216 aa17.53■□□□□ 0.4
SHMT2-208ENST00000553868 KIF22Q14807 665 aa17.53■□□□□ 0.4
SHMT2-208ENST00000553868 DLGAP5Q15398 846 aa17.53■□□□□ 0.4
SHMT2-208ENST00000553868 C8orf34Q49A92 452 aa17.53■□□□□ 0.4
SHMT2-208ENST00000553868 GORABQ5T7V8 394 aa17.53■□□□□ 0.4
SHMT2-208ENST00000553868 GPR153Q6NV75 609 aa17.53■□□□□ 0.4
SHMT2-208ENST00000553868 PI4K2BQ8TCG2 481 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms