RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 USP40Q9NVE5 1235 aa18.78■□□□□ 0.6
SHMT2-204ENST00000553324 LRP2BPQ9P2M1 347 aa18.78■□□□□ 0.6
SHMT2-204ENST00000553324 DBNLQ9UJU6 430 aaKnown RBP18.78■□□□□ 0.6
SHMT2-204ENST00000553324 PAPPA2Q9BXP8 1791 aa18.78■□□□□ 0.6
SHMT2-204ENST00000553324 FOXN1O15353 648 aa18.77■□□□□ 0.6
SHMT2-204ENST00000553324 MAP4K4O95819 1239 aaPredicted RBP18.77■□□□□ 0.6
SHMT2-204ENST00000553324 KIF23Q02241 960 aaPredicted RBP18.77■□□□□ 0.6
SHMT2-204ENST00000553324 MECOMQ03112 1051 aa18.77■□□□□ 0.6
SHMT2-204ENST00000553324 RASAL3Q86YV0 1011 aa18.77■□□□□ 0.6
SHMT2-204ENST00000553324 FAM151AQ8WW52 585 aa18.77■□□□□ 0.6
SHMT2-204ENST00000553324 SLC10A4Q96EP9 437 aa18.77■□□□□ 0.6
SHMT2-204ENST00000553324 TEPSINQ96N21 525 aa18.77■□□□□ 0.6
SHMT2-204ENST00000553324 TMEM39BQ9GZU3 492 aa18.77■□□□□ 0.6
SHMT2-204ENST00000553324 RAI14Q9P0K7 980 aa18.77■□□□□ 0.6
SHMT2-204ENST00000553324 GAKO14976 1311 aa18.76■□□□□ 0.59
SHMT2-204ENST00000553324 USP2O75604 605 aaPredicted RBP18.76■□□□□ 0.59
SHMT2-204ENST00000553324 CACNB3P54284 484 aa18.76■□□□□ 0.59
SHMT2-204ENST00000553324 ANKRD13AQ8IZ07 590 aa18.76■□□□□ 0.59
SHMT2-204ENST00000553324 ARAP2Q8WZ64 1704 aa18.76■□□□□ 0.59
SHMT2-204ENST00000553324 IFIT2P09913 472 aaKnown RBP18.75■□□□□ 0.59
SHMT2-204ENST00000553324 PI16Q6UXB8 463 aa18.75■□□□□ 0.59
SHMT2-204ENST00000553324 TBC1D9Q6ZT07 1266 aa18.75■□□□□ 0.59
SHMT2-204ENST00000553324 NSUN4Q96CB9 384 aaKnown RBP18.75■□□□□ 0.59
SHMT2-204ENST00000553324 IL1RAPL2Q9NP60 686 aa18.75■□□□□ 0.59
SHMT2-204ENST00000553324 PRDM10Q9NQV6 1147 aa18.75■□□□□ 0.59
SHMT2-204ENST00000553324 MROH7-TTC4A0A0A0MT08 1334 aa18.74■□□□□ 0.59
SHMT2-204ENST00000553324 GPR75-ASB3A0A0A6YYF3 556 aa18.74■□□□□ 0.59
SHMT2-204ENST00000553324 DCAF15Q66K64 600 aa18.74■□□□□ 0.59
SHMT2-204ENST00000553324 TMED8Q6PL24 325 aaPredicted RBP18.74■□□□□ 0.59
SHMT2-204ENST00000553324 IDI2Q9BXS1 227 aa18.74■□□□□ 0.59
SHMT2-204ENST00000553324 SNRKQ9NRH2 765 aa18.74■□□□□ 0.59
SHMT2-204ENST00000553324 APBB1O00213 710 aa18.73■□□□□ 0.59
SHMT2-204ENST00000553324 CYP2E1P05181 493 aaPredicted RBP18.73■□□□□ 0.59
SHMT2-204ENST00000553324 BTDP43251 543 aa18.73■□□□□ 0.59
SHMT2-204ENST00000553324 ZAP70P43403 619 aa18.73■□□□□ 0.59
SHMT2-204ENST00000553324 INHBEP58166 350 aa18.73■□□□□ 0.59
SHMT2-204ENST00000553324 MAP3K9P80192 1104 aa18.73■□□□□ 0.59
SHMT2-204ENST00000553324 CSRNP1Q96S65 589 aa18.73■□□□□ 0.59
SHMT2-204ENST00000553324 ZIC5Q96T25 663 aa18.73■□□□□ 0.59
SHMT2-204ENST00000553324 NOL10Q9BSC4 688 aaKnown RBP18.73■□□□□ 0.59
SHMT2-204ENST00000553324 TLR7Q9NYK1 1049 aaKnown RBP18.73■□□□□ 0.59
SHMT2-204ENST00000553324 ECM29Q5VYK3 1845 aa18.72■□□□□ 0.59
SHMT2-204ENST00000553324 ENTPD3O75355 529 aa18.72■□□□□ 0.59
SHMT2-204ENST00000553324 BAG3O95817 575 aa18.72■□□□□ 0.59
SHMT2-204ENST00000553324 ZBTB48P10074 688 aaPredicted RBP18.72■□□□□ 0.59
SHMT2-204ENST00000553324 AAMPQ13685 434 aa18.72■□□□□ 0.59
SHMT2-204ENST00000553324 NAA16Q6N069 864 aaPredicted RBP18.72■□□□□ 0.59
SHMT2-204ENST00000553324 LRRCC1Q9C099 1032 aa18.72■□□□□ 0.59
SHMT2-204ENST00000553324 SAGE1Q9NXZ1 904 aa18.72■□□□□ 0.59
SHMT2-204ENST00000553324 RPAP1Q9BWH6 1393 aaPredicted RBP18.71■□□□□ 0.59
SHMT2-204ENST00000553324 NPM3O75607 178 aaKnown RBP18.71■□□□□ 0.59
SHMT2-204ENST00000553324 SREBF2Q12772 1141 aa18.71■□□□□ 0.59
SHMT2-204ENST00000553324 TCP10Q12799 353 aa18.71■□□□□ 0.59
SHMT2-204ENST00000553324 TTF1Q15361 905 aaPredicted RBP18.71■□□□□ 0.59
SHMT2-204ENST00000553324 SPRYD7Q5W111 196 aa18.71■□□□□ 0.59
SHMT2-204ENST00000553324 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.71■□□□□ 0.59
SHMT2-204ENST00000553324 DCTPP1Q9H773 170 aa18.71■□□□□ 0.59
SHMT2-204ENST00000553324 FZD1Q9UP38 647 aa18.71■□□□□ 0.59
SHMT2-204ENST00000553324 CSADQ9Y600 493 aa18.71■□□□□ 0.59
SHMT2-204ENST00000553324 MYH13Q9UKX3 1938 aa18.7■□□□□ 0.58
SHMT2-204ENST00000553324 HSPA8P11142 646 aaKnown RBP18.7■□□□□ 0.58
SHMT2-204ENST00000553324 PLCG2P16885 1265 aa18.7■□□□□ 0.58
SHMT2-204ENST00000553324 TM4SF4P48230 202 aa18.7■□□□□ 0.58
SHMT2-204ENST00000553324 LBX1P52954 281 aa18.7■□□□□ 0.58
SHMT2-204ENST00000553324 NFIAQ12857 509 aa18.7■□□□□ 0.58
SHMT2-204ENST00000553324 FAM198AQ9UFP1 575 aa18.7■□□□□ 0.58
SHMT2-204ENST00000553324 SSC5DA1L4H1 1573 aa18.69■□□□□ 0.58
SHMT2-204ENST00000553324 MANSC4A6NHS7 340 aaPredicted RBP18.69■□□□□ 0.58
SHMT2-204ENST00000553324 RGS3P49796 1198 aa18.69■□□□□ 0.58
SHMT2-204ENST00000553324 MAP3K12Q12852 859 aa18.69■□□□□ 0.58
SHMT2-204ENST00000553324 COL13A1Q5TAT6 717 aaPredicted RBP18.69■□□□□ 0.58
SHMT2-204ENST00000553324 CERS3Q8IU89 383 aa18.69■□□□□ 0.58
SHMT2-204ENST00000553324 CDAN1Q8IWY9 1227 aa18.69■□□□□ 0.58
SHMT2-204ENST00000553324 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.69■□□□□ 0.588e-7■■□□□ 11.7
SHMT2-204ENST00000553324 ZNF384Q8TF68 577 aa18.69■□□□□ 0.58
SHMT2-204ENST00000553324 ZNF341Q9BYN7 854 aa18.69■□□□□ 0.58
SHMT2-204ENST00000553324 THSD7BQ9C0I4 1608 aa18.69■□□□□ 0.58
SHMT2-204ENST00000553324 WDHD1O75717 1129 aaPredicted RBP18.68■□□□□ 0.58
SHMT2-204ENST00000553324 RHBDL3P58872 404 aa18.68■□□□□ 0.58
SHMT2-204ENST00000553324 PPP4CP60510 307 aa18.68■□□□□ 0.58
SHMT2-204ENST00000553324 ZSCAN29Q8IWY8 852 aaPredicted RBP18.68■□□□□ 0.58
SHMT2-204ENST00000553324 CLMNQ96JQ2 1002 aa18.68■□□□□ 0.58
SHMT2-204ENST00000553324 RNF186Q9NXI6 227 aa18.68■□□□□ 0.58
SHMT2-204ENST00000553324 IDH1O75874 414 aaKnown RBP18.67■□□□□ 0.58
SHMT2-204ENST00000553324 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.67■□□□□ 0.58
SHMT2-204ENST00000553324 WNK4Q96J92 1243 aa18.67■□□□□ 0.58
SHMT2-204ENST00000553324 WRNIP1Q96S55 665 aa18.67■□□□□ 0.58
SHMT2-204ENST00000553324 BCL11AQ9H165 835 aa18.67■□□□□ 0.58
SHMT2-204ENST00000553324 PIH1D3Q9NQM4 214 aaKnown RBP18.67■□□□□ 0.58
SHMT2-204ENST00000553324 PCDHB15Q9Y5E8 787 aa18.67■□□□□ 0.58
SHMT2-204ENST00000553324 TRPA1O75762 1119 aa18.66■□□□□ 0.58
SHMT2-204ENST00000553324 ALDH1A1P00352 501 aa18.66■□□□□ 0.58
SHMT2-204ENST00000553324 MKRN3Q13064 507 aaKnown RBP18.66■□□□□ 0.58
SHMT2-204ENST00000553324 MIGA2Q7L4E1 593 aa18.66■□□□□ 0.58
SHMT2-204ENST00000553324 CRBNQ96SW2 442 aa18.66■□□□□ 0.58
SHMT2-204ENST00000553324 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.66■□□□□ 0.58
SHMT2-204ENST00000553324 ATP5JP18859 108 aa18.65■□□□□ 0.58
SHMT2-204ENST00000553324 PICALMQ13492 652 aa18.65■□□□□ 0.58
SHMT2-204ENST00000553324 VGLL4Q14135 290 aa18.65■□□□□ 0.58
SHMT2-204ENST00000553324 OTUD7BQ6GQQ9 843 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms