RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 KIAA0825Q8IV33 1275 aa9.67□□□□□ -0.86
NEK3-201ENST00000550331 ZBED3Q96IU2 234 aaPredicted RBP9.67□□□□□ -0.86
NEK3-201ENST00000550331 SCAF8Q9UPN6 1271 aaKnown RBP9.67□□□□□ -0.86
NEK3-201ENST00000550331 RBBP6Q7Z6E9 1792 aaKnown RBP9.67□□□□□ -0.86
NEK3-201ENST00000550331 F6X3S4 739 aa9.66□□□□□ -0.86
NEK3-201ENST00000550331 GRM8O00222 908 aa9.66□□□□□ -0.86
NEK3-201ENST00000550331 FKTNO75072 461 aa9.66□□□□□ -0.86
NEK3-201ENST00000550331 IL1R1P14778 569 aa9.66□□□□□ -0.86
NEK3-201ENST00000550331 FKBP1AP62942 108 aaKnown RBP9.66□□□□□ -0.86
NEK3-201ENST00000550331 NOM1Q5C9Z4 860 aaKnown RBP9.66□□□□□ -0.86
NEK3-201ENST00000550331 TJAP1Q5JTD0 557 aa9.66□□□□□ -0.86
NEK3-201ENST00000550331 PRAMEF18Q5VWM3 479 aa9.66□□□□□ -0.86
NEK3-201ENST00000550331 ARMC9Q7Z3E5 817 aa9.66□□□□□ -0.86
NEK3-201ENST00000550331 ZNF804AQ7Z570 1209 aa9.66□□□□□ -0.86
NEK3-201ENST00000550331 MTMR14Q8NCE2 650 aa9.66□□□□□ -0.86
NEK3-201ENST00000550331 LRCH3Q96II8 777 aa9.66□□□□□ -0.86
NEK3-201ENST00000550331 KIAA1468Q9P260 1216 aa9.66□□□□□ -0.86
NEK3-201ENST00000550331 STK17AQ9UEE5 414 aa9.66□□□□□ -0.86
NEK3-201ENST00000550331 SALL2Q9Y467 1007 aaPredicted RBP9.66□□□□□ -0.86
NEK3-201ENST00000550331 MYH3P11055 1940 aa9.66□□□□□ -0.86
NEK3-201ENST00000550331 EVI5O60447 810 aa9.65□□□□□ -0.86
NEK3-201ENST00000550331 TAF5LO75529 589 aa9.65□□□□□ -0.86
NEK3-201ENST00000550331 ALDH1L1O75891 902 aa9.65□□□□□ -0.86
NEK3-201ENST00000550331 COL9A1P20849 921 aa9.65□□□□□ -0.86
NEK3-201ENST00000550331 TM4SF4P48230 202 aa9.65□□□□□ -0.86
NEK3-201ENST00000550331 SREBF2Q12772 1141 aa9.65□□□□□ -0.86
NEK3-201ENST00000550331 DLGAP5Q15398 846 aa9.65□□□□□ -0.86
NEK3-201ENST00000550331 CCDC57Q2TAC2 916 aa9.65□□□□□ -0.86
NEK3-201ENST00000550331 LMBR1LQ6UX01 489 aa9.65□□□□□ -0.86
NEK3-201ENST00000550331 CERS5Q8N5B7 392 aa9.65□□□□□ -0.86
NEK3-201ENST00000550331 CHMP3Q9Y3E7 222 aa9.65□□□□□ -0.86
NEK3-201ENST00000550331 PPP2R3BQ9Y5P8 575 aa9.65□□□□□ -0.86
NEK3-201ENST00000550331 SPEF2Q9C093 1822 aa9.65□□□□□ -0.86
NEK3-201ENST00000550331 SNAP23O00161 211 aa9.64□□□□□ -0.87
NEK3-201ENST00000550331 MYO1BO43795 1136 aa9.64□□□□□ -0.87
NEK3-201ENST00000550331 TAF7LQ5H9L4 462 aa9.64□□□□□ -0.87
NEK3-201ENST00000550331 LDLRAD1Q5T700 205 aa9.64□□□□□ -0.87
NEK3-201ENST00000550331 LDHAL6AQ6ZMR3 332 aa9.64□□□□□ -0.87
NEK3-201ENST00000550331 CFHR5Q9BXR6 569 aa9.64□□□□□ -0.87
NEK3-201ENST00000550331 SRCIN1Q9C0H9 1055 aa9.64□□□□□ -0.87
NEK3-201ENST00000550331 DEFB129Q9H1M3 183 aa9.64□□□□□ -0.87
NEK3-201ENST00000550331 R3HDMLQ9H3Y0 253 aa9.64□□□□□ -0.87
NEK3-201ENST00000550331 CNNM1Q9NRU3 951 aa9.64□□□□□ -0.87
NEK3-201ENST00000550331 CENPFP49454 3210 aa9.64□□□□□ -0.87
NEK3-201ENST00000550331 CEP290O15078 2479 aa9.64□□□□□ -0.87
NEK3-201ENST00000550331 UNCXA6NJT0 531 aa9.63□□□□□ -0.87
NEK3-201ENST00000550331 FXR1P51114 621 aaKnown RBP eCLIP9.63□□□□□ -0.87
NEK3-201ENST00000550331 PTPN12Q05209 780 aaKnown RBP9.63□□□□□ -0.87
NEK3-201ENST00000550331 MAP3K11Q16584 847 aa9.63□□□□□ -0.87
NEK3-201ENST00000550331 EPHA10Q5JZY3 1008 aa9.63□□□□□ -0.87
NEK3-201ENST00000550331 INTS3Q68E01 1043 aaKnown RBP9.63□□□□□ -0.87
NEK3-201ENST00000550331 HELBQ8NG08 1087 aaPredicted RBP9.63□□□□□ -0.87
NEK3-201ENST00000550331 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.63□□□□□ -0.87
NEK3-201ENST00000550331 C9orf78Q9NZ63 289 aaPredicted RBP9.63□□□□□ -0.87
NEK3-201ENST00000550331 TRIM17Q9Y577 477 aa9.63□□□□□ -0.87
NEK3-201ENST00000550331 HTTP42858 3142 aa9.63□□□□□ -0.87
NEK3-201ENST00000550331 BRCA2P51587 3418 aa9.62□□□□□ -0.87
NEK3-201ENST00000550331 UTYO14607 1347 aa9.62□□□□□ -0.87
NEK3-201ENST00000550331 FAM205AQ6ZU69 1335 aa9.62□□□□□ -0.87
NEK3-201ENST00000550331 TRIOBPQ9H2D6 2365 aa9.62□□□□□ -0.87
NEK3-201ENST00000550331 F8W031 263 aaPredicted RBP9.62□□□□□ -0.87
NEK3-201ENST00000550331 ALDH1A1P00352 501 aa9.62□□□□□ -0.87
NEK3-201ENST00000550331 INHBEP58166 350 aa9.62□□□□□ -0.87
NEK3-201ENST00000550331 UBE4AQ14139 1066 aa9.62□□□□□ -0.87
NEK3-201ENST00000550331 SUPT20HL1Q3ZLR7 823 aa9.62□□□□□ -0.87
NEK3-201ENST00000550331 CFAP100Q494V2 611 aa9.62□□□□□ -0.87
NEK3-201ENST00000550331 SPRYD7Q5W111 196 aa9.62□□□□□ -0.87
NEK3-201ENST00000550331 SLC4A10Q6U841 1118 aa9.62□□□□□ -0.87
NEK3-201ENST00000550331 ZNF594Q96JF6 807 aaPredicted RBP9.62□□□□□ -0.87
NEK3-201ENST00000550331 PRMT6Q96LA8 375 aaPredicted RBP9.62□□□□□ -0.87
NEK3-201ENST00000550331 SEPT9Q9UHD8 586 aaPredicted RBP9.62□□□□□ -0.87
NEK3-201ENST00000550331 ANGEL1Q9UNK9 670 aaKnown RBP9.62□□□□□ -0.87
NEK3-201ENST00000550331 SSC5DA1L4H1 1573 aa9.62□□□□□ -0.87
NEK3-201ENST00000550331 ZNF521Q96K83 1311 aa9.61□□□□□ -0.87
NEK3-201ENST00000550331 MANSC4A6NHS7 340 aaPredicted RBP9.61□□□□□ -0.87
NEK3-201ENST00000550331 PPP1R12BO60237 982 aaPredicted RBP9.61□□□□□ -0.87
NEK3-201ENST00000550331 ZBTB48P10074 688 aaPredicted RBP9.61□□□□□ -0.87
NEK3-201ENST00000550331 PRKG1Q13976 671 aa9.61□□□□□ -0.87
NEK3-201ENST00000550331 RABL6Q3YEC7 729 aaPredicted RBP9.61□□□□□ -0.87
NEK3-201ENST00000550331 OTOP1Q7RTM1 612 aa9.61□□□□□ -0.87
NEK3-201ENST00000550331 FAM9BQ8IZU0 186 aa9.61□□□□□ -0.87
NEK3-201ENST00000550331 TDRD7Q8NHU6 1098 aaKnown RBP9.61□□□□□ -0.87
NEK3-201ENST00000550331 KAZALD1Q96I82 304 aa9.61□□□□□ -0.87
NEK3-201ENST00000550331 A0A1B0GUL6 1792 aa9.6□□□□□ -0.87
NEK3-201ENST00000550331 LAMB1P07942 1786 aa9.6□□□□□ -0.87
NEK3-201ENST00000550331 PTPRCP08575 1304 aa9.6□□□□□ -0.87
NEK3-201ENST00000550331 MROH5Q6ZUA9 1318 aa9.6□□□□□ -0.87
NEK3-201ENST00000550331 CLRN2A0PK11 232 aa9.6□□□□□ -0.87
NEK3-201ENST00000550331 PLIN1O60240 522 aa9.6□□□□□ -0.87
NEK3-201ENST00000550331 NBPF7P0C2Y1 421 aaPredicted RBP9.6□□□□□ -0.87
NEK3-201ENST00000550331 HIBADHP31937 336 aaKnown RBP9.6□□□□□ -0.87
NEK3-201ENST00000550331 RBM5P52756 815 aaKnown RBP eCLIP9.6□□□□□ -0.87
NEK3-201ENST00000550331 TNFAIP1Q13829 316 aa9.6□□□□□ -0.87
NEK3-201ENST00000550331 MFSD14BQ5SR56 506 aa9.6□□□□□ -0.87
NEK3-201ENST00000550331 SLC10A4Q96EP9 437 aa9.6□□□□□ -0.87
NEK3-201ENST00000550331 SUCLG2Q96I99 432 aa9.6□□□□□ -0.87
NEK3-201ENST00000550331 IL21Q9HBE4 155 aa9.6□□□□□ -0.87
NEK3-201ENST00000550331 VEZTQ9HBM0 779 aa9.6□□□□□ -0.87
NEK3-201ENST00000550331 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.6□□□□□ -0.87
NEK3-201ENST00000550331 SERPINA10Q9UK55 444 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms