RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 GRM1Q13255 1194 aa18.59■□□□□ 0.57
CUX1-213ENST00000549414 GIGYF2Q6Y7W6 1299 aaKnown RBP18.59■□□□□ 0.57
CUX1-213ENST00000549414 ANKARQ7Z5J8 1434 aa18.58■□□□□ 0.57
CUX1-213ENST00000549414 ZNF335Q9H4Z2 1342 aaPredicted RBP18.58■□□□□ 0.57
CUX1-213ENST00000549414 TDRD12Q587J7 1177 aaKnown RBP18.58■□□□□ 0.57
CUX1-213ENST00000549414 ODF2Q5BJF6 829 aa18.58■□□□□ 0.57
CUX1-213ENST00000549414 TMCO3Q6UWJ1 677 aa18.58■□□□□ 0.57
CUX1-213ENST00000549414 SCRN1Q12765 414 aa18.58■□□□□ 0.56
CUX1-213ENST00000549414 ANKRD2Q9GZV1 360 aa18.58■□□□□ 0.56
CUX1-213ENST00000549414 PDCL3Q9H2J4 239 aa18.58■□□□□ 0.56
CUX1-213ENST00000549414 ECM2O94769 699 aaPredicted RBP18.58■□□□□ 0.56
CUX1-213ENST00000549414 SPA17Q15506 151 aa18.58■□□□□ 0.56
CUX1-213ENST00000549414 YEATS4O95619 227 aa18.57■□□□□ 0.56
CUX1-213ENST00000549414 PRIMPOLQ96LW4 560 aa18.57■□□□□ 0.56
CUX1-213ENST00000549414 CDCA7Q9BWT1 371 aaPredicted RBP18.57■□□□□ 0.56
CUX1-213ENST00000549414 MYO3AQ8NEV4 1616 aa18.57■□□□□ 0.56
CUX1-213ENST00000549414 MROH5Q6ZUA9 1318 aa18.57■□□□□ 0.56
CUX1-213ENST00000549414 UFL1O94874 794 aa18.57■□□□□ 0.56
CUX1-213ENST00000549414 EIF6P56537 245 aaKnown RBP18.57■□□□□ 0.56
CUX1-213ENST00000549414 GNAQP50148 359 aa18.57■□□□□ 0.56
CUX1-213ENST00000549414 SEC31BQ9NQW1 1179 aa18.57■□□□□ 0.56
CUX1-213ENST00000549414 POLR1AO95602 1720 aaPredicted RBP18.57■□□□□ 0.56
CUX1-213ENST00000549414 CALM1P0DP23 149 aa18.57■□□□□ 0.56
CUX1-213ENST00000549414 CALM2P0DP24 149 aa18.57■□□□□ 0.56
CUX1-213ENST00000549414 CALM3P0DP25 149 aa18.57■□□□□ 0.56
CUX1-213ENST00000549414 PPP4R3BQ5MIZ7 849 aa18.57■□□□□ 0.56
CUX1-213ENST00000549414 SYNE4Q8N205 404 aa18.57■□□□□ 0.56
CUX1-213ENST00000549414 ZBTB9Q96C00 473 aa18.57■□□□□ 0.56
CUX1-213ENST00000549414 KCNH3Q9ULD8 1083 aa18.57■□□□□ 0.56
CUX1-213ENST00000549414 MAST3O60307 1309 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 ZNF202O95125 648 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 BMP15O95972 392 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 TCERG1LQ5VWI1 586 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 CCDC148Q8NFR7 591 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 PIGBQ92521 554 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 DYNC1I1O14576 645 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 ERLIN1O75477 346 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 PDE8BO95263 885 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 TSG101Q99816 390 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 RNF216Q9NWF9 866 aaPredicted RBP18.56■□□□□ 0.56
CUX1-213ENST00000549414 LOC102724428A0A0B4J2F2 783 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 POLR2DO15514 142 aaKnown RBP18.56■□□□□ 0.56
CUX1-213ENST00000549414 TNNI2P48788 182 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 SIK1P57059 783 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 FAM47AQ5JRC9 791 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 AKNAD1Q5T1N1 836 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 BRINP3Q76B58 766 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 STAMQ92783 540 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 FTOQ9C0B1 505 aaKnown RBP eCLIP18.56■□□□□ 0.56
CUX1-213ENST00000549414 IQGAP1P46940 1657 aa18.56■□□□□ 0.56
CUX1-213ENST00000549414 SNAP23O00161 211 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 ASIC1P78348 528 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 ATL3Q6DD88 541 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 TEX11Q8IYF3 940 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 CCDC102AQ96A19 550 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 ADCY9O60503 1353 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 HEG1Q9ULI3 1381 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 CCDC40Q4G0X9 1142 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 KIF2CQ99661 725 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 MAPK8IP1Q9UQF2 711 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 ELP1O95163 1332 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 PFKFB2O60825 505 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 DEXIO95424 95 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 ZMYM1Q5SVZ6 1142 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 MYSM1Q5VVJ2 828 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 EXOC1Q9NV70 894 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 PIK3C2BO00750 1634 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 FSD2A1L4K1 749 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 ERICH4A6NGS2 130 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 PIK3AP1Q6ZUJ8 805 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 IFNL3Q8IZI9 196 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 OSBP2Q969R2 916 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 VPS54Q9P1Q0 977 aa18.55■□□□□ 0.56
CUX1-213ENST00000549414 CLTCQ00610 1675 aaKnown RBP18.54■□□□□ 0.56
CUX1-213ENST00000549414 A0A087WWV3 80 aa18.54■□□□□ 0.56
CUX1-213ENST00000549414 USP17L12C9JPN9 530 aa18.54■□□□□ 0.56
CUX1-213ENST00000549414 USP17L21D6R901 530 aa18.54■□□□□ 0.56
CUX1-213ENST00000549414 PDIA3P30101 505 aaKnown RBP18.54■□□□□ 0.56
CUX1-213ENST00000549414 RPS8P62241 208 aaKnown RBP18.54■□□□□ 0.56
CUX1-213ENST00000549414 OGFOD1Q8N543 542 aa18.54■□□□□ 0.56
CUX1-213ENST00000549414 ADGRB1O14514 1584 aa18.54■□□□□ 0.56
CUX1-213ENST00000549414 AMPD3Q01432 767 aa18.54■□□□□ 0.56
CUX1-213ENST00000549414 RILPL1Q5EBL4 403 aa18.54■□□□□ 0.56
CUX1-213ENST00000549414 CENPHQ9H3R5 247 aa18.54■□□□□ 0.56
CUX1-213ENST00000549414 GPHNQ9NQX3 736 aaPredicted RBP18.54■□□□□ 0.56
CUX1-213ENST00000549414 M0R2C6 588 aa18.54■□□□□ 0.56
CUX1-213ENST00000549414 TRIM21P19474 475 aaKnown RBP18.54■□□□□ 0.56
CUX1-213ENST00000549414 CALML3P27482 149 aa18.54■□□□□ 0.56
CUX1-213ENST00000549414 CRKLP46109 303 aaKnown RBP18.53■□□□□ 0.56
CUX1-213ENST00000549414 MYL5Q02045 173 aa18.53■□□□□ 0.56
CUX1-213ENST00000549414 NECTIN1Q15223 517 aa18.53■□□□□ 0.56
CUX1-213ENST00000549414 CUL5Q93034 780 aa18.53■□□□□ 0.56
CUX1-213ENST00000549414 PARP3Q9Y6F1 533 aa18.53■□□□□ 0.56
CUX1-213ENST00000549414 CRB1P82279 1406 aa18.53■□□□□ 0.56
CUX1-213ENST00000549414 PATL2C9JE40 543 aaKnown RBP18.53■□□□□ 0.56
CUX1-213ENST00000549414 ZNF274Q96GC6 653 aaPredicted RBP18.53■□□□□ 0.56
CUX1-213ENST00000549414 LETM2Q2VYF4 491 aa18.52■□□□□ 0.56
CUX1-213ENST00000549414 MAPKAPK5Q8IW41 473 aa18.52■□□□□ 0.56
CUX1-213ENST00000549414 VEZTQ9HBM0 779 aa18.52■□□□□ 0.56
CUX1-213ENST00000549414 USP31Q70CQ4 1352 aa18.52■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms