RNA–Protein interactions for RNA: ENST00000549354.6

LINC00661-204, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best) BASIC

Gene LINC00661, Length 3,340 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-204ENST00000549354 MCAMP43121 646 aa12.92□□□□□ -0.34
LINC00661-204ENST00000549354 ZNF75DP51815 510 aa12.92□□□□□ -0.34
LINC00661-204ENST00000549354 TBC1D9BQ66K14 1250 aa12.92□□□□□ -0.34
LINC00661-204ENST00000549354 CCAR1Q8IX12 1150 aaKnown RBP12.92□□□□□ -0.34
LINC00661-204ENST00000549354 AIFM3Q96NN9 605 aa12.92□□□□□ -0.34
LINC00661-204ENST00000549354 QTRT2Q9H974 415 aaKnown RBP12.92□□□□□ -0.34
LINC00661-204ENST00000549354 MTMR7Q9Y216 660 aa12.92□□□□□ -0.34
LINC00661-204ENST00000549354 COL4A1P02462 1669 aa12.92□□□□□ -0.34
LINC00661-204ENST00000549354 ZAP70P43403 619 aa12.92□□□□□ -0.34
LINC00661-204ENST00000549354 ERFEQ4G0M1 354 aa12.92□□□□□ -0.34
LINC00661-204ENST00000549354 CMTR1Q8N1G2 835 aaKnown RBP12.92□□□□□ -0.34
LINC00661-204ENST00000549354 SCRN1Q12765 414 aa12.91□□□□□ -0.34
LINC00661-204ENST00000549354 FAM182BQ5T319 152 aa12.91□□□□□ -0.34
LINC00661-204ENST00000549354 NYXQ9GZU5 481 aa12.91□□□□□ -0.34
LINC00661-204ENST00000549354 SCAND2PQ9GZW5 306 aaPredicted RBP12.91□□□□□ -0.34
LINC00661-204ENST00000549354 RTCBQ9Y3I0 505 aaKnown RBP12.91□□□□□ -0.34
LINC00661-204ENST00000549354 MAST3O60307 1309 aa12.91□□□□□ -0.34
LINC00661-204ENST00000549354 UBE2Q2LH0YL09 131 aa12.91□□□□□ -0.34
LINC00661-204ENST00000549354 NCBP1Q09161 790 aaKnown RBP12.91□□□□□ -0.34
LINC00661-204ENST00000549354 TTF1Q15361 905 aaPredicted RBP12.91□□□□□ -0.34
LINC00661-204ENST00000549354 CCDC102BQ68D86 513 aa12.91□□□□□ -0.34
LINC00661-204ENST00000549354 CCDC112Q8NEF3 446 aa12.91□□□□□ -0.34
LINC00661-204ENST00000549354 IGHMBP2P38935 993 aaKnown RBP12.91□□□□□ -0.34
LINC00661-204ENST00000549354 STOX1Q6ZVD7 989 aa12.91□□□□□ -0.34
LINC00661-204ENST00000549354 ZNF771Q7L3S4 317 aaPredicted RBP12.91□□□□□ -0.34
LINC00661-204ENST00000549354 DOCK2Q92608 1830 aa12.91□□□□□ -0.34
LINC00661-204ENST00000549354 ARHGEF1Q92888 912 aaKnown RBP12.91□□□□□ -0.34
LINC00661-204ENST00000549354 USP28Q96RU2 1077 aa12.91□□□□□ -0.34
LINC00661-204ENST00000549354 CPLX1O14810 134 aa12.9□□□□□ -0.34
LINC00661-204ENST00000549354 GNPATO15228 680 aa12.9□□□□□ -0.34
LINC00661-204ENST00000549354 SLC5A1P13866 664 aa12.9□□□□□ -0.34
LINC00661-204ENST00000549354 AMIGO3Q86WK7 504 aa12.9□□□□□ -0.34
LINC00661-204ENST00000549354 FSIP1Q8NA03 581 aa12.9□□□□□ -0.34
LINC00661-204ENST00000549354 OSBP2Q969R2 916 aa12.9□□□□□ -0.34
LINC00661-204ENST00000549354 TRERF1Q96PN7 1200 aa12.9□□□□□ -0.34
LINC00661-204ENST00000549354 CDC5LQ99459 802 aaKnown RBP12.9□□□□□ -0.34
LINC00661-204ENST00000549354 MPHOSPH8Q99549 860 aa12.9□□□□□ -0.34
LINC00661-204ENST00000549354 BRWD3Q6RI45 1802 aa12.9□□□□□ -0.34
LINC00661-204ENST00000549354 ZBTB22O15209 634 aa12.9□□□□□ -0.34
LINC00661-204ENST00000549354 IDH1O75874 414 aaKnown RBP12.9□□□□□ -0.34
LINC00661-204ENST00000549354 ADRA2BP18089 450 aa12.9□□□□□ -0.34
LINC00661-204ENST00000549354 AOPEPQ8N6M6 819 aa12.9□□□□□ -0.34
LINC00661-204ENST00000549354 PTPDC1A2A3K4 754 aa12.9□□□□□ -0.35
LINC00661-204ENST00000549354 HSPD1P10809 573 aaKnown RBP12.9□□□□□ -0.35
LINC00661-204ENST00000549354 DMTNQ08495 405 aa12.9□□□□□ -0.35
LINC00661-204ENST00000549354 C3orf67Q6ZVT6 689 aa12.9□□□□□ -0.35
LINC00661-204ENST00000549354 APPBP2Q92624 585 aa12.9□□□□□ -0.35
LINC00661-204ENST00000549354 BSDC1Q9NW68 430 aaPredicted RBP12.9□□□□□ -0.35
LINC00661-204ENST00000549354 M0R2C6 588 aa12.89□□□□□ -0.35
LINC00661-204ENST00000549354 GTF2F1P35269 517 aaKnown RBP eCLIP12.89□□□□□ -0.35
LINC00661-204ENST00000549354 PHKA1P46020 1223 aa12.89□□□□□ -0.35
LINC00661-204ENST00000549354 ANKRD1Q15327 319 aa12.89□□□□□ -0.35
LINC00661-204ENST00000549354 FAM196AQ6ZSG2 479 aa12.89□□□□□ -0.35
LINC00661-204ENST00000549354 CLSTN2Q9H4D0 955 aa12.89□□□□□ -0.35
LINC00661-204ENST00000549354 SRP68Q9UHB9 627 aaKnown RBP12.89□□□□□ -0.35
LINC00661-204ENST00000549354 UBR3Q6ZT12 1888 aa12.89□□□□□ -0.35
LINC00661-204ENST00000549354 FOXP2O15409 715 aa12.89□□□□□ -0.35
LINC00661-204ENST00000549354 KINO60870 393 aaKnown RBP12.89□□□□□ -0.35
LINC00661-204ENST00000549354 ZPR1O75312 459 aa12.89□□□□□ -0.35
LINC00661-204ENST00000549354 SKILP12757 684 aa12.89□□□□□ -0.35
LINC00661-204ENST00000549354 SLC27A3Q5K4L6 730 aa12.89□□□□□ -0.35
LINC00661-204ENST00000549354 CCDC73Q6ZRK6 1079 aa12.89□□□□□ -0.35
LINC00661-204ENST00000549354 CCAR2Q8N163 923 aaKnown RBP12.89□□□□□ -0.35
LINC00661-204ENST00000549354 SETDB2Q96T68 719 aa12.89□□□□□ -0.35
LINC00661-204ENST00000549354 ZKSCAN3Q9BRR0 538 aa12.89□□□□□ -0.35
LINC00661-204ENST00000549354 LRRC4BQ9NT99 713 aa12.89□□□□□ -0.35
LINC00661-204ENST00000549354 hCG_1642624A0A1W2PR95 340 aa12.88□□□□□ -0.35
LINC00661-204ENST00000549354 LMOD1P29536 600 aaPredicted RBP12.88□□□□□ -0.35
LINC00661-204ENST00000549354 ADD2P35612 726 aa12.88□□□□□ -0.35
LINC00661-204ENST00000549354 UBE3CQ15386 1083 aa12.88□□□□□ -0.35
LINC00661-204ENST00000549354 PDILTQ8N807 584 aa12.88□□□□□ -0.35
LINC00661-204ENST00000549354 MICU3Q86XE3 530 aa12.88□□□□□ -0.35
LINC00661-204ENST00000549354 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.88□□□□□ -0.35
LINC00661-204ENST00000549354 DDX19AQ9NUU7 478 aaKnown RBP12.88□□□□□ -0.35
LINC00661-204ENST00000549354 COBLO75128 1261 aa12.88□□□□□ -0.35
LINC00661-204ENST00000549354 CHRNDQ07001 517 aa12.88□□□□□ -0.35
LINC00661-204ENST00000549354 STK38Q15208 465 aa12.88□□□□□ -0.35
LINC00661-204ENST00000549354 CEP135Q66GS9 1140 aa12.88□□□□□ -0.35
LINC00661-204ENST00000549354 PHKBQ93100 1093 aa12.88□□□□□ -0.35
LINC00661-204ENST00000549354 GOLPH3LQ9H4A5 285 aa12.88□□□□□ -0.35
LINC00661-204ENST00000549354 ZNF804BA4D1E1 1349 aa12.87□□□□□ -0.35
LINC00661-204ENST00000549354 SMIM5Q71RC9 77 aa12.87□□□□□ -0.35
LINC00661-204ENST00000549354 PIH1D3Q9NQM4 214 aaKnown RBP12.87□□□□□ -0.35
LINC00661-204ENST00000549354 ZNF215Q9UL58 517 aaPredicted RBP12.87□□□□□ -0.35
LINC00661-204ENST00000549354 TCRBV5S4A2TA0A5A2 114 aa12.87□□□□□ -0.35
LINC00661-204ENST00000549354 HMGB1P09429 215 aaKnown RBP12.87□□□□□ -0.35
LINC00661-204ENST00000549354 TRAPPC3LQ5T215 181 aa12.87□□□□□ -0.35
LINC00661-204ENST00000549354 ANKRD18AQ8IVF6 992 aa12.87□□□□□ -0.35
LINC00661-204ENST00000549354 FBXL16Q8N461 479 aa12.87□□□□□ -0.35
LINC00661-204ENST00000549354 LAMA4Q16363 1823 aa12.87□□□□□ -0.35
LINC00661-204ENST00000549354 ERICH4A6NGS2 130 aa12.87□□□□□ -0.35
LINC00661-204ENST00000549354 TPTE2Q6XPS3 522 aa12.87□□□□□ -0.35
LINC00661-204ENST00000549354 GTF3C6Q969F1 213 aa12.87□□□□□ -0.35
LINC00661-204ENST00000549354 AGXT2Q9BYV1 514 aa12.87□□□□□ -0.35
LINC00661-204ENST00000549354 TPM3P06753 285 aa12.86□□□□□ -0.35
LINC00661-204ENST00000549354 HMGB2P26583 209 aaKnown RBP12.86□□□□□ -0.35
LINC00661-204ENST00000549354 UBE4AQ14139 1066 aa12.86□□□□□ -0.35
LINC00661-204ENST00000549354 KRT27Q7Z3Y8 459 aa12.86□□□□□ -0.35
LINC00661-204ENST00000549354 SPATA5Q8NB90 893 aa12.86□□□□□ -0.35
LINC00661-204ENST00000549354 ST7Q9NRC1 585 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms