RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ASPAP45381 313 aa7.1□□□□□ -1.27
VPS29-205ENST00000548539 KRTAP19-4Q3LI73 84 aa7.1□□□□□ -1.27
VPS29-205ENST00000548539 CYP27C1Q4G0S4 372 aa7.1□□□□□ -1.27
VPS29-205ENST00000548539 AKAP4Q5JQC9 854 aa7.1□□□□□ -1.27
VPS29-205ENST00000548539 WFDC3Q8IUB2 231 aa7.1□□□□□ -1.27
VPS29-205ENST00000548539 C1GALT1Q9NS00 363 aa7.1□□□□□ -1.27
VPS29-205ENST00000548539 PHACTR2O75167 634 aa7.09□□□□□ -1.27
VPS29-205ENST00000548539 CYP11A1P05108 521 aa7.09□□□□□ -1.27
VPS29-205ENST00000548539 FUT4P22083 530 aa7.09□□□□□ -1.27
VPS29-205ENST00000548539 MZF1P28698 734 aaPredicted RBP7.09□□□□□ -1.27
VPS29-205ENST00000548539 NRSN2Q9GZP1 204 aa7.09□□□□□ -1.27
VPS29-205ENST00000548539 ZFYVE1Q9HBF4 777 aa7.09□□□□□ -1.27
VPS29-205ENST00000548539 AP4E1Q9UPM8 1137 aa7.09□□□□□ -1.27
VPS29-205ENST00000548539 NOM1Q5C9Z4 860 aaKnown RBP7.08□□□□□ -1.28
VPS29-205ENST00000548539 SEZ6L2Q6UXD5 910 aa7.08□□□□□ -1.28
VPS29-205ENST00000548539 GLYCTKQ8IVS8 523 aa7.08□□□□□ -1.28
VPS29-205ENST00000548539 ZNF428Q96B54 188 aa7.08□□□□□ -1.28
VPS29-205ENST00000548539 LGR6Q9HBX8 967 aa7.08□□□□□ -1.28
VPS29-205ENST00000548539 MBNL3Q9NUK0 354 aaKnown RBP7.08□□□□□ -1.28
VPS29-205ENST00000548539 DAGLAQ9Y4D2 1042 aa7.08□□□□□ -1.28
VPS29-205ENST00000548539 DYNC1LI2O43237 492 aaPredicted RBP7.07□□□□□ -1.28
VPS29-205ENST00000548539 ICMTO60725 284 aa7.07□□□□□ -1.28
VPS29-205ENST00000548539 TNFRSF21O75509 655 aa7.07□□□□□ -1.28
VPS29-205ENST00000548539 RNASE1P07998 156 aaKnown RBP7.07□□□□□ -1.28
VPS29-205ENST00000548539 CD8BP10966 210 aa7.07□□□□□ -1.28
VPS29-205ENST00000548539 POU4F3Q15319 338 aa7.07□□□□□ -1.28
VPS29-205ENST00000548539 PI4K2BQ8TCG2 481 aa7.07□□□□□ -1.28
VPS29-205ENST00000548539 NETO1Q8TDF5 533 aa7.07□□□□□ -1.28
VPS29-205ENST00000548539 FAM84AQ96KN4 292 aa7.07□□□□□ -1.28
VPS29-205ENST00000548539 EGFL7Q9UHF1 273 aa7.07□□□□□ -1.28
VPS29-205ENST00000548539 KRTAP9-7A8MTY7 169 aa7.06□□□□□ -1.28
VPS29-205ENST00000548539 METTL12A8MUP2 240 aa7.06□□□□□ -1.28
VPS29-205ENST00000548539 RANGAP1P46060 587 aaPredicted RBP7.06□□□□□ -1.28
VPS29-205ENST00000548539 KRTAP4-5Q9BYR2 181 aa7.06□□□□□ -1.28
VPS29-205ENST00000548539 CTSBP07858 339 aa7.05□□□□□ -1.28
VPS29-205ENST00000548539 RBM25P49756 843 aaKnown RBP7.05□□□□□ -1.28
VPS29-205ENST00000548539 PCDH1Q08174 1060 aa7.05□□□□□ -1.28
VPS29-205ENST00000548539 PEAR1Q5VY43 1037 aaPredicted RBP7.05□□□□□ -1.28
VPS29-205ENST00000548539 PLD6Q8N2A8 252 aaKnown RBP7.05□□□□□ -1.28
VPS29-205ENST00000548539 LRRN4CLQ8ND94 238 aa7.05□□□□□ -1.28
VPS29-205ENST00000548539 BHLHE22Q8NFJ8 381 aaPredicted RBP7.05□□□□□ -1.28
VPS29-205ENST00000548539 HELQQ8TDG4 1101 aa7.05□□□□□ -1.28
VPS29-205ENST00000548539 SNX29Q8TEQ0 813 aa7.05□□□□□ -1.28
VPS29-205ENST00000548539 CLEC4MQ9H2X3 399 aaPredicted RBP7.05□□□□□ -1.28
VPS29-205ENST00000548539 GSX1Q9H4S2 264 aaPredicted RBP7.05□□□□□ -1.28
VPS29-205ENST00000548539 LATS2Q9NRM7 1088 aa7.05□□□□□ -1.28
VPS29-205ENST00000548539 ADAMTS6Q9UKP5 1117 aa7.05□□□□□ -1.28
VPS29-205ENST00000548539 VAV3Q9UKW4 847 aa7.05□□□□□ -1.28
VPS29-205ENST00000548539 LRRC10BA6NIK2 292 aa7.04□□□□□ -1.28
VPS29-205ENST00000548539 ZNF865P0CJ78 1059 aaPredicted RBP7.04□□□□□ -1.28
VPS29-205ENST00000548539 FKBP4Q02790 459 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS29-205ENST00000548539 MESP2Q0VG99 397 aa7.04□□□□□ -1.28
VPS29-205ENST00000548539 ZNF423Q2M1K9 1284 aa7.04□□□□□ -1.28
VPS29-205ENST00000548539 KRTAP5-3Q6L8H2 238 aa7.04□□□□□ -1.28
VPS29-205ENST00000548539 CORO1BQ9BR76 489 aa7.04□□□□□ -1.28
VPS29-205ENST00000548539 A0A096LPE4 126 aa7.03□□□□□ -1.28
VPS29-205ENST00000548539 A0A1W2PPZ6 126 aa7.03□□□□□ -1.28
VPS29-205ENST00000548539 EIF1AXP47813 144 aaKnown RBP7.03□□□□□ -1.28
VPS29-205ENST00000548539 PRKCQQ04759 706 aa7.03□□□□□ -1.28
VPS29-205ENST00000548539 FAM181AQ8N9Y4 354 aa7.03□□□□□ -1.28
VPS29-205ENST00000548539 DDX54Q8TDD1 881 aaKnown RBP7.03□□□□□ -1.28
VPS29-205ENST00000548539 TOX2Q96NM4 488 aa7.03□□□□□ -1.28
VPS29-205ENST00000548539 FOXD3Q9UJU5 478 aaPredicted RBP7.03□□□□□ -1.28
VPS29-205ENST00000548539 POLIQ9UNA4 740 aa7.03□□□□□ -1.28
VPS29-205ENST00000548539 AMOTL2Q9Y2J4 779 aa7.03□□□□□ -1.28
VPS29-205ENST00000548539 FAM87AP0C7U9 286 aa7.02□□□□□ -1.29
VPS29-205ENST00000548539 MPSTP25325 297 aa7.02□□□□□ -1.29
VPS29-205ENST00000548539 EHHADHQ08426 723 aa7.02□□□□□ -1.29
VPS29-205ENST00000548539 SF3B2Q13435 895 aaKnown RBP7.02□□□□□ -1.29
VPS29-205ENST00000548539 ECM1Q16610 540 aa7.02□□□□□ -1.29
VPS29-205ENST00000548539 ALKBH2Q6NS38 261 aa7.02□□□□□ -1.29
VPS29-205ENST00000548539 DNAJC14Q6Y2X3 702 aaPredicted RBP7.02□□□□□ -1.29
VPS29-205ENST00000548539 AOC2O75106 756 aa7.01□□□□□ -1.29
VPS29-205ENST00000548539 MAPK1P28482 360 aa7.01□□□□□ -1.29
VPS29-205ENST00000548539 CD96P40200 585 aa7.01□□□□□ -1.29
VPS29-205ENST00000548539 RAP1GAPP47736 663 aa7.01□□□□□ -1.29
VPS29-205ENST00000548539 AAMPQ13685 434 aa7.01□□□□□ -1.29
VPS29-205ENST00000548539 AOC3Q16853 763 aa7.01□□□□□ -1.29
VPS29-205ENST00000548539 FAM53CQ9NYF3 392 aa7.01□□□□□ -1.29
VPS29-205ENST00000548539 ECEL1O95672 775 aa7□□□□□ -1.29
VPS29-205ENST00000548539 ARHGAP4P98171 946 aa7□□□□□ -1.29
VPS29-205ENST00000548539 CDK5R2Q13319 367 aa7□□□□□ -1.29
VPS29-205ENST00000548539 LILRA6Q6PI73 481 aa7□□□□□ -1.29
VPS29-205ENST00000548539 ARHGAP27Q6ZUM4 889 aa7□□□□□ -1.29
VPS29-205ENST00000548539 ZSCAN18Q8TBC5 510 aaPredicted RBP7□□□□□ -1.29
VPS29-205ENST00000548539 HRASLS5Q96KN8 279 aa7□□□□□ -1.29
VPS29-205ENST00000548539 ANKRD33BA6NCL7 494 aa6.99□□□□□ -1.29
VPS29-205ENST00000548539 CFPP27918 469 aa6.99□□□□□ -1.29
VPS29-205ENST00000548539 USP5P45974 858 aa6.99□□□□□ -1.29
VPS29-205ENST00000548539 PDE3AQ14432 1141 aa6.99□□□□□ -1.29
VPS29-205ENST00000548539 MLANAQ16655 118 aa6.99□□□□□ -1.29
VPS29-205ENST00000548539 IFI16Q16666 785 aaKnown RBP6.99□□□□□ -1.29
VPS29-205ENST00000548539 SPRED3Q2MJR0 410 aa6.99□□□□□ -1.29
VPS29-205ENST00000548539 ZSWIM9Q86XI8 627 aa6.99□□□□□ -1.29
VPS29-205ENST00000548539 CCNJLQ8IV13 435 aa6.99□□□□□ -1.29
VPS29-205ENST00000548539 TRIM56Q9BRZ2 755 aaKnown RBP6.99□□□□□ -1.29
VPS29-205ENST00000548539 PPP1R9AQ9ULJ8 1098 aa6.99□□□□□ -1.29
VPS29-205ENST00000548539 FAM13AO94988 1023 aa6.98□□□□□ -1.29
VPS29-205ENST00000548539 KCNMB1Q16558 191 aa6.98□□□□□ -1.29
VPS29-205ENST00000548539 ANGEL2Q5VTE6 544 aaKnown RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms