RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CFAP100Q494V2 611 aa17.41■□□□□ 0.38
USP28-214ENST00000545540 FOXP4Q8IVH2 680 aaPredicted RBP17.41■□□□□ 0.38
USP28-214ENST00000545540 TRMT44Q8IYL2 757 aaKnown RBP17.41■□□□□ 0.38
USP28-214ENST00000545540 ZSWIM5Q9P217 1185 aa17.41■□□□□ 0.38
USP28-214ENST00000545540 IFIT3O14879 490 aaKnown RBP17.41■□□□□ 0.38
USP28-214ENST00000545540 MBD4O95243 580 aa17.41■□□□□ 0.38
USP28-214ENST00000545540 PDE6AP16499 860 aa17.41■□□□□ 0.38
USP28-214ENST00000545540 ADD2P35612 726 aa17.41■□□□□ 0.38
USP28-214ENST00000545540 NLRP10Q86W26 655 aa17.41■□□□□ 0.38
USP28-214ENST00000545540 GOLGA8AA7E2F4 631 aa17.4■□□□□ 0.38
USP28-214ENST00000545540 NCAPHQ15003 741 aa17.4■□□□□ 0.38
USP28-214ENST00000545540 SMIM5Q71RC9 77 aa17.4■□□□□ 0.38
USP28-214ENST00000545540 EPC1Q9H2F5 836 aa17.4■□□□□ 0.38
USP28-214ENST00000545540 ATG3Q9NT62 314 aa17.4■□□□□ 0.38
USP28-214ENST00000545540 RFX7Q2KHR2 1363 aa17.4■□□□□ 0.38
USP28-214ENST00000545540 FANCCQ00597 558 aa17.4■□□□□ 0.38
USP28-214ENST00000545540 NR5A1Q13285 461 aa17.4■□□□□ 0.38
USP28-214ENST00000545540 POLR3EQ9NVU0 708 aa17.4■□□□□ 0.38
USP28-214ENST00000545540 ANKRD18BA2A2Z9 1011 aa17.4■□□□□ 0.38
USP28-214ENST00000545540 SFPQP23246 707 aaKnown RBP eCLIP17.4■□□□□ 0.38
USP28-214ENST00000545540 CASP1P29466 404 aa17.4■□□□□ 0.38
USP28-214ENST00000545540 ERCC6LQ2NKX8 1250 aa17.4■□□□□ 0.38
USP28-214ENST00000545540 FANCLQ9NW38 375 aa17.4■□□□□ 0.38
USP28-214ENST00000545540 PHRF1Q9P1Y6 1649 aaKnown RBP17.39■□□□□ 0.37
USP28-214ENST00000545540 ZBTB43O43298 467 aa17.39■□□□□ 0.37
USP28-214ENST00000545540 PCCAP05165 728 aaPredicted RBP17.39■□□□□ 0.37
USP28-214ENST00000545540 IARSP41252 1262 aaKnown RBP17.39■□□□□ 0.37
USP28-214ENST00000545540 PDE4BQ07343 736 aa17.39■□□□□ 0.37
USP28-214ENST00000545540 KMT5BQ4FZB7 885 aa17.39■□□□□ 0.37
USP28-214ENST00000545540 SMAP1Q8IYB5 467 aaPredicted RBP17.39■□□□□ 0.37
USP28-214ENST00000545540 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.39■□□□□ 0.371e-6■■■□□ 14.8
USP28-214ENST00000545540 CDC25BP30305 580 aa17.39■□□□□ 0.37
USP28-214ENST00000545540 USP49Q70CQ1 688 aa17.39■□□□□ 0.37
USP28-214ENST00000545540 BAZ2BQ9UIF8 2168 aaKnown RBP17.39■□□□□ 0.37
USP28-214ENST00000545540 TNS3Q68CZ2 1445 aa17.39■□□□□ 0.37
USP28-214ENST00000545540 ZFYP08048 801 aaPredicted RBP17.38■□□□□ 0.37
USP28-214ENST00000545540 BCAMP50895 628 aa17.38■□□□□ 0.37
USP28-214ENST00000545540 EPB41L4AQ9HCS5 686 aaPredicted RBP17.38■□□□□ 0.37
USP28-214ENST00000545540 PAXBP1Q9Y5B6 917 aa17.38■□□□□ 0.37
USP28-214ENST00000545540 CAMTA1Q9Y6Y1 1673 aa17.38■□□□□ 0.37
USP28-214ENST00000545540 RBM6P78332 1123 aaKnown RBP17.38■□□□□ 0.37
USP28-214ENST00000545540 NYAP1Q6ZVC0 841 aa17.38■□□□□ 0.37
USP28-214ENST00000545540 UTP14AQ9BVJ6 771 aaKnown RBP17.38■□□□□ 0.37
USP28-214ENST00000545540 MINDY4BA8MYZ0 360 aa17.38■□□□□ 0.37
USP28-214ENST00000545540 CAVIN2O95810 425 aa17.38■□□□□ 0.37
USP28-214ENST00000545540 CTSWP56202 376 aa17.38■□□□□ 0.37
USP28-214ENST00000545540 UBASH3AP57075 661 aa17.38■□□□□ 0.37
USP28-214ENST00000545540 NLRP12P59046 1061 aa17.38■□□□□ 0.37
USP28-214ENST00000545540 SLC39A14Q15043 492 aa17.38■□□□□ 0.37
USP28-214ENST00000545540 PPP1R13BQ96KQ4 1090 aa17.38■□□□□ 0.37
USP28-214ENST00000545540 NAPBQ9H115 298 aa17.38■□□□□ 0.37
USP28-214ENST00000545540 HSD3B7Q9H2F3 369 aa17.38■□□□□ 0.37
USP28-214ENST00000545540 FAM217BQ9NTX9 383 aaPredicted RBP17.38■□□□□ 0.37
USP28-214ENST00000545540 PCDHA5Q9Y5H7 936 aa17.38■□□□□ 0.37
USP28-214ENST00000545540 A0A1W2PQ27 194 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 A0A1W2PQ64 194 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 A0A1W2PQD8 194 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 FAM205CA6NFA0 338 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 SH2B2O14492 632 aaPredicted RBP17.37■□□□□ 0.37
USP28-214ENST00000545540 YEATS4O95619 227 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 DNAI1Q9UI46 699 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 PDE8BO95263 885 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 CSF1RP07333 972 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 FBXO38Q6PIJ6 1188 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 GIGYF2Q6Y7W6 1299 aaKnown RBP17.37■□□□□ 0.37
USP28-214ENST00000545540 CNNM3Q8NE01 707 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 KIF18AQ8NI77 898 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 SDR42E1Q8WUS8 393 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 BTG4Q9NY30 223 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 ABCF2Q9UG63 623 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 UBN2Q6ZU65 1347 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 PRDM1O75626 825 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 STARD3NLO95772 234 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 CMA1P23946 247 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 EVCP57679 992 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 LRRFIP1Q32MZ4 808 aaKnown RBP17.37■□□□□ 0.37
USP28-214ENST00000545540 OXER1Q8TDS5 423 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 STAMQ92783 540 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 SLC12A7Q9Y666 1083 aa17.37■□□□□ 0.37
USP28-214ENST00000545540 CYP2D7A0A087X1C5 515 aa17.36■□□□□ 0.37
USP28-214ENST00000545540 PRR29P0C7W0 189 aa17.36■□□□□ 0.37
USP28-214ENST00000545540 BMP6P22004 513 aa17.36■□□□□ 0.37
USP28-214ENST00000545540 KCNQ4P56696 695 aa17.36■□□□□ 0.37
USP28-214ENST00000545540 RASGRF1Q13972 1273 aa17.36■□□□□ 0.37
USP28-214ENST00000545540 METTL16Q86W50 562 aaKnown RBP17.36■□□□□ 0.37
USP28-214ENST00000545540 IGDCC4Q8TDY8 1250 aa17.36■□□□□ 0.37
USP28-214ENST00000545540 ACSBG1Q96GR2 724 aa17.36■□□□□ 0.37
USP28-214ENST00000545540 TRIM29Q14134 588 aa17.36■□□□□ 0.37
USP28-214ENST00000545540 BRAPQ7Z569 592 aa17.36■□□□□ 0.37
USP28-214ENST00000545540 CREBRFQ8IUR6 639 aa17.36■□□□□ 0.37
USP28-214ENST00000545540 STRBPQ96SI9 672 aaKnown RBP17.36■□□□□ 0.37
USP28-214ENST00000545540 TDO2P48775 406 aa17.35■□□□□ 0.37
USP28-214ENST00000545540 EVX2Q03828 476 aa17.35■□□□□ 0.37
USP28-214ENST00000545540 LY9Q9HBG7 655 aa17.35■□□□□ 0.37
USP28-214ENST00000545540 ZMYM6O95789 1325 aa17.35■□□□□ 0.37
USP28-214ENST00000545540 MAP3K15Q6ZN16 1313 aa17.35■□□□□ 0.37
USP28-214ENST00000545540 KLHL10Q6JEL2 608 aa17.35■□□□□ 0.37
USP28-214ENST00000545540 IFNL3Q8IZI9 196 aa17.35■□□□□ 0.37
USP28-214ENST00000545540 LCORLQ8N3X6 602 aa17.35■□□□□ 0.37
USP28-214ENST00000545540 POLR2DO15514 142 aaKnown RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms