RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 APOBEC3FQ8IUX4 373 aaKnown RBP15.16■□□□□ 0.02
VPS33A-207ENST00000542790 ZDHHC15Q96MV8 337 aa15.16■□□□□ 0.02
VPS33A-207ENST00000542790 COLQQ9Y215 455 aaPredicted RBP15.16■□□□□ 0.02
VPS33A-207ENST00000542790 TMEM88BA6NKF7 163 aa15.15■□□□□ 0.02
VPS33A-207ENST00000542790 ADM5C9JUS6 153 aa15.15■□□□□ 0.02
VPS33A-207ENST00000542790 IGSF3O75054 1194 aa15.15■□□□□ 0.02
VPS33A-207ENST00000542790 IRX6P78412 446 aaPredicted RBP15.15■□□□□ 0.02
VPS33A-207ENST00000542790 DZIP1Q86YF9 867 aaKnown RBP15.15■□□□□ 0.02
VPS33A-207ENST00000542790 SLF2Q8IX21 1173 aa15.15■□□□□ 0.02
VPS33A-207ENST00000542790 GCC1Q96CN9 775 aa15.15■□□□□ 0.02
VPS33A-207ENST00000542790 SNRKQ9NRH2 765 aa15.15■□□□□ 0.02
VPS33A-207ENST00000542790 PCDHAC2Q9Y5I4 1007 aa15.15■□□□□ 0.02
VPS33A-207ENST00000542790 PSME4Q14997 1843 aa15.15■□□□□ 0.02
VPS33A-207ENST00000542790 CLRN2A0PK11 232 aa15.14■□□□□ 0.01
VPS33A-207ENST00000542790 SMARCA5O60264 1052 aaPredicted RBP15.14■□□□□ 0.01
VPS33A-207ENST00000542790 FMR1Q06787 632 aaKnown RBP eCLIP15.14■□□□□ 0.01
VPS33A-207ENST00000542790 TBC1D9Q6ZT07 1266 aa15.14■□□□□ 0.01
VPS33A-207ENST00000542790 LRP2BPQ9P2M1 347 aa15.14■□□□□ 0.01
VPS33A-207ENST00000542790 ECM2O94769 699 aaPredicted RBP15.13■□□□□ 0.01
VPS33A-207ENST00000542790 CELF2O95319 508 aaKnown RBP15.13■□□□□ 0.01
VPS33A-207ENST00000542790 CYP2E1P05181 493 aaPredicted RBP15.13■□□□□ 0.01
VPS33A-207ENST00000542790 ZAP70P43403 619 aa15.13■□□□□ 0.01
VPS33A-207ENST00000542790 GSTO1P78417 241 aa15.13■□□□□ 0.01
VPS33A-207ENST00000542790 TNFAIP1Q13829 316 aa15.13■□□□□ 0.01
VPS33A-207ENST00000542790 DIXDC1Q155Q3 683 aa15.13■□□□□ 0.01
VPS33A-207ENST00000542790 CST9Q5W186 159 aa15.13■□□□□ 0.01
VPS33A-207ENST00000542790 APOBEC3HQ6NTF7 200 aaKnown RBP15.13■□□□□ 0.01
VPS33A-207ENST00000542790 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.13■□□□□ 0.01
VPS33A-207ENST00000542790 FAM163AQ96GL9 167 aaPredicted RBP15.13■□□□□ 0.01
VPS33A-207ENST00000542790 TDRD3Q9H7E2 651 aaKnown RBP15.13■□□□□ 0.01
VPS33A-207ENST00000542790 ZNF408Q9H9D4 720 aa15.13■□□□□ 0.01
VPS33A-207ENST00000542790 VEZTQ9HBM0 779 aa15.13■□□□□ 0.01
VPS33A-207ENST00000542790 RAI14Q9P0K7 980 aa15.13■□□□□ 0.01
VPS33A-207ENST00000542790 ZNF70Q9UC06 446 aaPredicted RBP15.13■□□□□ 0.01
VPS33A-207ENST00000542790 RIOK3O14730 519 aaKnown RBP15.12■□□□□ 0.01
VPS33A-207ENST00000542790 LDHCP07864 332 aa15.12■□□□□ 0.01
VPS33A-207ENST00000542790 ATP5JP18859 108 aa15.12■□□□□ 0.01
VPS33A-207ENST00000542790 MECOMQ03112 1051 aa15.12■□□□□ 0.01
VPS33A-207ENST00000542790 DLK2Q6UY11 383 aa15.12■□□□□ 0.01
VPS33A-207ENST00000542790 CDCA5Q96FF9 252 aa15.12■□□□□ 0.01
VPS33A-207ENST00000542790 DEFB129Q9H1M3 183 aa15.12■□□□□ 0.01
VPS33A-207ENST00000542790 TMOD2Q9NZR1 351 aa15.12■□□□□ 0.01
VPS33A-207ENST00000542790 SCAF8Q9UPN6 1271 aaKnown RBP15.12■□□□□ 0.01
VPS33A-207ENST00000542790 DAGLAQ9Y4D2 1042 aa15.12■□□□□ 0.01
VPS33A-207ENST00000542790 PPP2R3BQ9Y5P8 575 aa15.12■□□□□ 0.01
VPS33A-207ENST00000542790 ARAP2Q8WZ64 1704 aa15.12■□□□□ 0.01
VPS33A-207ENST00000542790 ZNF646O15015 1829 aaPredicted RBP15.11■□□□□ 0.01
VPS33A-207ENST00000542790 TNNI2P48788 182 aa15.11■□□□□ 0.01
VPS33A-207ENST00000542790 HTRA3P83110 453 aa15.11■□□□□ 0.01
VPS33A-207ENST00000542790 TTF1Q15361 905 aaPredicted RBP15.11■□□□□ 0.01
VPS33A-207ENST00000542790 IER5LQ5T953 404 aa15.11■□□□□ 0.01
VPS33A-207ENST00000542790 NSUN4Q96CB9 384 aaKnown RBP15.11■□□□□ 0.01
VPS33A-207ENST00000542790 GPATCH3Q96I76 525 aa15.11■□□□□ 0.01
VPS33A-207ENST00000542790 ECHDC1Q9NTX5 307 aa15.11■□□□□ 0.01
VPS33A-207ENST00000542790 ABT1Q9ULW3 272 aaKnown RBP15.11■□□□□ 0.01
VPS33A-207ENST00000542790 AOX1Q06278 1338 aa15.11■□□□□ 0.01
VPS33A-207ENST00000542790 NF2P35240 595 aa15.1■□□□□ 0.01
VPS33A-207ENST00000542790 RASA3Q14644 834 aa15.1■□□□□ 0.01
VPS33A-207ENST00000542790 ANKRD45Q5TZF3 282 aa15.1■□□□□ 0.01
VPS33A-207ENST00000542790 FKBP1CQ5VVH2 108 aa15.1■□□□□ 0.01
VPS33A-207ENST00000542790 C2orf69Q8N8R5 385 aa15.1■□□□□ 0.01
VPS33A-207ENST00000542790 USP40Q9NVE5 1235 aa15.1■□□□□ 0.01
VPS33A-207ENST00000542790 GAKO14976 1311 aa15.1■□□□□ 0.01
VPS33A-207ENST00000542790 IGHDP01880 384 aa15.09■□□□□ 0.01
VPS33A-207ENST00000542790 SUPT20HL1Q3ZLR7 823 aa15.09■□□□□ 0.01
VPS33A-207ENST00000542790 NAA16Q6N069 864 aaPredicted RBP15.09■□□□□ 0.01
VPS33A-207ENST00000542790 CDC42EP5Q6NZY7 148 aa15.09■□□□□ 0.01
VPS33A-207ENST00000542790 TMED8Q6PL24 325 aaPredicted RBP15.09■□□□□ 0.01
VPS33A-207ENST00000542790 SMC5Q8IY18 1101 aa15.09■□□□□ 0.01
VPS33A-207ENST00000542790 BOLA2Q9H3K6 86 aa15.09■□□□□ 0.01
VPS33A-207ENST00000542790 GBA2Q9HCG7 927 aaPredicted RBP15.09■□□□□ 0.01
VPS33A-207ENST00000542790 PIH1D3Q9NQM4 214 aaKnown RBP15.09■□□□□ 0.01
VPS33A-207ENST00000542790 NDUFB9Q9Y6M9 179 aa15.09■□□□□ 0.01
VPS33A-207ENST00000542790 MROH7-TTC4A0A0A0MT08 1334 aa15.09■□□□□ 0.01
VPS33A-207ENST00000542790 GPR75-ASB3A0A0A6YYF3 556 aa15.08■□□□□ 0
VPS33A-207ENST00000542790 TCP10L2B9ZVM9 353 aa15.08■□□□□ 0
VPS33A-207ENST00000542790 IDH1O75874 414 aaKnown RBP15.08■□□□□ 0
VPS33A-207ENST00000542790 MAP4K4O95819 1239 aaPredicted RBP15.08■□□□□ 0
VPS33A-207ENST00000542790 CENPBP07199 599 aaPredicted RBP15.08■□□□□ 0
VPS33A-207ENST00000542790 FKBP1BP68106 108 aa15.08■□□□□ 0
VPS33A-207ENST00000542790 MAP3K12Q12852 859 aa15.08■□□□□ 0
VPS33A-207ENST00000542790 PRAMEF18Q5VWM3 479 aa15.08■□□□□ 0
VPS33A-207ENST00000542790 SAPCD2Q86UD0 394 aa15.08■□□□□ 0
VPS33A-207ENST00000542790 ZNF384Q8TF68 577 aa15.08■□□□□ 0
VPS33A-207ENST00000542790 DNAJC2Q99543 621 aaKnown RBP15.08■□□□□ 0
VPS33A-207ENST00000542790 HAUS7Q99871 368 aa15.08■□□□□ 0
VPS33A-207ENST00000542790 NOL10Q9BSC4 688 aaKnown RBP15.08■□□□□ 0
VPS33A-207ENST00000542790 ANTXR1Q9H6X2 564 aa15.08■□□□□ 0
VPS33A-207ENST00000542790 TLL2Q9Y6L7 1015 aa15.08■□□□□ 0
VPS33A-207ENST00000542790 GOLIM4O00461 696 aa15.07■□□□□ 0
VPS33A-207ENST00000542790 BAG3O95817 575 aa15.07■□□□□ 0
VPS33A-207ENST00000542790 BTDP43251 543 aa15.07■□□□□ 0
VPS33A-207ENST00000542790 CACNB3P54284 484 aa15.07■□□□□ 0
VPS33A-207ENST00000542790 IRX5P78411 483 aaPredicted RBP15.07■□□□□ 0
VPS33A-207ENST00000542790 DEFB115Q30KQ5 88 aa15.07■□□□□ 0
VPS33A-207ENST00000542790 FAM83AQ86UY5 434 aa15.07■□□□□ 0
VPS33A-207ENST00000542790 DNAJC5GQ8N7S2 189 aa15.07■□□□□ 0
VPS33A-207ENST00000542790 TTC41PQ6P2S7 1318 aa15.07■□□□□ 0
VPS33A-207ENST00000542790 RASSF10A6NK89 507 aa15.06■□□□□ 0
VPS33A-207ENST00000542790 B4GALNT3Q6L9W6 998 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms