RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 SPDYE2Q495Y8 402 aa10.14□□□□□ -0.79
CHMP4A-209ENST00000542700 CCDC152Q4G0S7 254 aa10.14□□□□□ -0.79
CHMP4A-209ENST00000542700 PNISRQ8TF01 805 aaKnown RBP10.14□□□□□ -0.79
CHMP4A-209ENST00000542700 BADQ92934 168 aa10.14□□□□□ -0.79
CHMP4A-209ENST00000542700 PRDM12Q9H4Q4 367 aa10.14□□□□□ -0.79
CHMP4A-209ENST00000542700 TDRD3Q9H7E2 651 aaKnown RBP10.14□□□□□ -0.79
CHMP4A-209ENST00000542700 PRDM5Q9NQX1 630 aaPredicted RBP10.14□□□□□ -0.79
CHMP4A-209ENST00000542700 CXXC1Q9P0U4 656 aaPredicted RBP10.14□□□□□ -0.79
CHMP4A-209ENST00000542700 KCNH4Q9UQ05 1017 aa10.14□□□□□ -0.79
CHMP4A-209ENST00000542700 IGFBP4P22692 258 aa10.13□□□□□ -0.79
CHMP4A-209ENST00000542700 TIFAQ96CG3 184 aa10.13□□□□□ -0.79
CHMP4A-209ENST00000542700 UIMC1Q96RL1 719 aa10.13□□□□□ -0.79
CHMP4A-209ENST00000542700 SENP6Q9GZR1 1112 aaPredicted RBP10.13□□□□□ -0.79
CHMP4A-209ENST00000542700 HTATSF1O43719 755 aaKnown RBP10.12□□□□□ -0.79
CHMP4A-209ENST00000542700 PRKAR2AP13861 404 aaKnown RBP10.12□□□□□ -0.79
CHMP4A-209ENST00000542700 AMER1Q5JTC6 1135 aaPredicted RBP10.12□□□□□ -0.79
CHMP4A-209ENST00000542700 GPAT2Q6NUI2 795 aa10.12□□□□□ -0.79
CHMP4A-209ENST00000542700 FBXL18Q96ME1 805 aa10.12□□□□□ -0.79
CHMP4A-209ENST00000542700 ISCA1Q9BUE6 129 aa10.12□□□□□ -0.79
CHMP4A-209ENST00000542700 TSPYL2Q9H2G4 693 aaPredicted RBP10.12□□□□□ -0.79
CHMP4A-209ENST00000542700 MINPP1Q9UNW1 487 aa10.12□□□□□ -0.79
CHMP4A-209ENST00000542700 TNNI2P48788 182 aa10.11□□□□□ -0.79
CHMP4A-209ENST00000542700 RTP1P59025 263 aa10.11□□□□□ -0.79
CHMP4A-209ENST00000542700 ADGRE1Q14246 886 aa10.11□□□□□ -0.79
CHMP4A-209ENST00000542700 AAK1Q2M2I8 961 aa10.11□□□□□ -0.79
CHMP4A-209ENST00000542700 SMCR8Q8TEV9 937 aaPredicted RBP10.11□□□□□ -0.79
CHMP4A-209ENST00000542700 TRIB2Q92519 343 aa10.11□□□□□ -0.79
CHMP4A-209ENST00000542700 JAG2Q9Y219 1238 aa10.11□□□□□ -0.79
CHMP4A-209ENST00000542700 ATP11BQ9Y2G3 1177 aa10.11□□□□□ -0.79
CHMP4A-209ENST00000542700 SPEF2Q9C093 1822 aa10.1□□□□□ -0.79
CHMP4A-209ENST00000542700 PRR33A8MZF0 331 aa10.1□□□□□ -0.79
CHMP4A-209ENST00000542700 ST18O60284 1047 aa10.1□□□□□ -0.79
CHMP4A-209ENST00000542700 INPP5BP32019 993 aa10.1□□□□□ -0.79
CHMP4A-209ENST00000542700 MICALL1Q8N3F8 863 aa10.1□□□□□ -0.79
CHMP4A-209ENST00000542700 ANKRD13CQ8N6S4 541 aa10.1□□□□□ -0.79
CHMP4A-209ENST00000542700 DOCK3Q8IZD9 2030 aa10.1□□□□□ -0.79
CHMP4A-209ENST00000542700 CACNA1GO43497 2377 aa10.09□□□□□ -0.79
CHMP4A-209ENST00000542700 ZDBF2Q9HCK1 2354 aa10.09□□□□□ -0.79
CHMP4A-209ENST00000542700 MAP3K21Q5TCX8 1036 aa10.09□□□□□ -0.79
CHMP4A-209ENST00000542700 PHOX2BQ99453 314 aa10.09□□□□□ -0.79
CHMP4A-209ENST00000542700 CDC5LQ99459 802 aaKnown RBP10.09□□□□□ -0.79
CHMP4A-209ENST00000542700 CD209Q9NNX6 404 aa10.09□□□□□ -0.79
CHMP4A-209ENST00000542700 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.08□□□□□ -0.8
CHMP4A-209ENST00000542700 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.08□□□□□ -0.8
CHMP4A-209ENST00000542700 PI4K2BG5E9Z4 385 aa10.08□□□□□ -0.8
CHMP4A-209ENST00000542700 CACNB3P54284 484 aa10.08□□□□□ -0.8
CHMP4A-209ENST00000542700 EPHB4P54760 987 aa10.08□□□□□ -0.8
CHMP4A-209ENST00000542700 SKIV2LQ15477 1246 aaKnown RBP10.08□□□□□ -0.8
CHMP4A-209ENST00000542700 LHX8Q68G74 356 aa10.08□□□□□ -0.8
CHMP4A-209ENST00000542700 PLBD2Q8NHP8 589 aa10.08□□□□□ -0.8
CHMP4A-209ENST00000542700 JARID2Q92833 1246 aaPredicted RBP10.08□□□□□ -0.8
CHMP4A-209ENST00000542700 BSDC1Q9NW68 430 aaPredicted RBP10.08□□□□□ -0.8
CHMP4A-209ENST00000542700 LEMD3Q9Y2U8 911 aa10.08□□□□□ -0.8
CHMP4A-209ENST00000542700 PDE8AO60658 829 aa10.07□□□□□ -0.8
CHMP4A-209ENST00000542700 HSP90B1P14625 803 aaKnown RBP10.07□□□□□ -0.8
CHMP4A-209ENST00000542700 CYP2B6P20813 491 aa10.07□□□□□ -0.8
CHMP4A-209ENST00000542700 CCND3P30281 292 aaPredicted RBP10.07□□□□□ -0.8
CHMP4A-209ENST00000542700 EIF4G2P78344 907 aaKnown RBP eCLIP10.07□□□□□ -0.8
CHMP4A-209ENST00000542700 GADL1Q6ZQY3 521 aa10.07□□□□□ -0.8
CHMP4A-209ENST00000542700 MIGA2Q7L4E1 593 aa10.07□□□□□ -0.8
CHMP4A-209ENST00000542700 DZIP1LQ8IYY4 767 aaKnown RBP10.07□□□□□ -0.8
CHMP4A-209ENST00000542700 KRT37O76014 449 aa10.06□□□□□ -0.8
CHMP4A-209ENST00000542700 PBX2P40425 430 aa10.06□□□□□ -0.8
CHMP4A-209ENST00000542700 KCNJ4P48050 445 aa10.06□□□□□ -0.8
CHMP4A-209ENST00000542700 CC2D1BQ5T0F9 858 aaKnown RBP10.06□□□□□ -0.8
CHMP4A-209ENST00000542700 DCAF15Q66K64 600 aa10.06□□□□□ -0.8
CHMP4A-209ENST00000542700 SH3RF1Q7Z6J0 888 aa10.06□□□□□ -0.8
CHMP4A-209ENST00000542700 ZNF341Q9BYN7 854 aa10.06□□□□□ -0.8
CHMP4A-209ENST00000542700 PDLIM7Q9NR12 457 aa10.06□□□□□ -0.8
CHMP4A-209ENST00000542700 GJD2Q9UKL4 321 aa10.06□□□□□ -0.8
CHMP4A-209ENST00000542700 LRRC37A2A6NM11 1700 aa10.06□□□□□ -0.8
CHMP4A-209ENST00000542700 TRIM43BA6NCK2 446 aa10.05□□□□□ -0.8
CHMP4A-209ENST00000542700 FKBP1AP62942 108 aaKnown RBP10.05□□□□□ -0.8
CHMP4A-209ENST00000542700 CACNB2Q08289 660 aaPredicted RBP10.05□□□□□ -0.8
CHMP4A-209ENST00000542700 CNGB1Q14028 1251 aaPredicted RBP10.05□□□□□ -0.8
CHMP4A-209ENST00000542700 CSPP1Q1MSJ5 1256 aa10.05□□□□□ -0.8
CHMP4A-209ENST00000542700 FAM110CQ1W6H9 321 aa10.05□□□□□ -0.8
CHMP4A-209ENST00000542700 CCDC129Q6ZRS4 1044 aa10.05□□□□□ -0.8
CHMP4A-209ENST00000542700 FASTKD5Q7L8L6 764 aaKnown RBP10.05□□□□□ -0.8
CHMP4A-209ENST00000542700 TRIM43Q96BQ3 446 aaPredicted RBP10.05□□□□□ -0.8
CHMP4A-209ENST00000542700 HOOK2Q96ED9 719 aa10.05□□□□□ -0.8
CHMP4A-209ENST00000542700 TSPYL4Q9UJ04 414 aa10.05□□□□□ -0.8
CHMP4A-209ENST00000542700 SERPINA10Q9UK55 444 aa10.05□□□□□ -0.8
CHMP4A-209ENST00000542700 TTF2Q9UNY4 1162 aaKnown RBP10.05□□□□□ -0.8
CHMP4A-209ENST00000542700 MYO9BQ13459 2157 aa10.04□□□□□ -0.8
CHMP4A-209ENST00000542700 AK9Q5TCS8 1911 aa10.04□□□□□ -0.8
CHMP4A-209ENST00000542700 CXCL11O14625 94 aa10.04□□□□□ -0.8
CHMP4A-209ENST00000542700 ERC2O15083 957 aa10.04□□□□□ -0.8
CHMP4A-209ENST00000542700 ZKSCAN1P17029 563 aaPredicted RBP10.04□□□□□ -0.8
CHMP4A-209ENST00000542700 TRIM60Q495X7 471 aa10.04□□□□□ -0.8
CHMP4A-209ENST00000542700 PBX4Q9BYU1 374 aa10.04□□□□□ -0.8
CHMP4A-209ENST00000542700 KCNH6Q9H252 994 aa10.04□□□□□ -0.8
CHMP4A-209ENST00000542700 CD320Q9NPF0 282 aa10.04□□□□□ -0.8
CHMP4A-209ENST00000542700 CHPF2Q9P2E5 772 aa10.04□□□□□ -0.8
CHMP4A-209ENST00000542700 DNAH12Q6ZR08 3092 aa10.04□□□□□ -0.8
CHMP4A-209ENST00000542700 CACNA1BQ00975 2339 aa10.04□□□□□ -0.8
CHMP4A-209ENST00000542700 FRMPD3Q5JV73 1810 aa10.03□□□□□ -0.8
CHMP4A-209ENST00000542700 A0A0G2JLL6 359 aaPredicted RBP10.03□□□□□ -0.8
CHMP4A-209ENST00000542700 ZNF316A6NFI3 1004 aaPredicted RBP10.03□□□□□ -0.8
CHMP4A-209ENST00000542700 GRXCR1A8MXD5 290 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms